Cwl

re-designed a bunch of CWL

runs/kallisto/README.md

+# Kallisto Workflow
+
+## Executing the multi-step workflow
+
+```bash
+cd runs/kallisto/
+cwltool --cachedir cache2 ../../workflows/kallisto/kallisto-workflow.cwl workflow.yml > $(date +"%Y-%m-%d_%H-%M").log 2>&1 &
+```