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Wrobel-2023-CastorBeanEndospermProteome

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    • Name Last commit Last update
    .arc
    Publication
    _NicolesData
    assays
    runs
    studies
    workflows
    .gitattributes
    .gitignore
    README.md
    isa.investigation.xlsx
    README.md

    ricinus_proteome_arc

    Legacy data on Ricinus proteome from Nicole Linka and Thomas Wrobel

    setting up this arc

    using arcCommander v0.3.1

    arc init
arc i create -i "Ricinus proteome"
mkdir _NicolesData; touch _NicolesData/.gitkeep

    add raw dataset as retrieved from Anja Stefanski via Sciebo (06.04.2022)

    setup assay structure

    arc assay add -s "2012_ricinus_proteome_wrobel" -a "2012_proteome_data_bmfz_stefanski"

    run md5s on downloaded data

    md5 ~/Downloads/Daten\ Linka/*.raw > _NicolesData/raw_data_md5s.txt

    Add large data to gitignore for now...

    printf "\n*.raw" >> .gitignore

    add downloaded data to arc

    mv ~/Downloads/Daten\ Linka/Messliste_Wrobel.xlsx _NicolesData/
mv ~/Downloads/Daten\ Linka/*.raw assays/2012_proteome_data_bmfz_stefanski/dataset

    sync arc with GitLab

    arc sync -m "add raw data from bmfz"