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[1] "set parameters:"
[1] "Counts file:/mnt/NAS_coruscant_datashare/haasf/madland_RNA-seq_Hoecker/31315.p.sort.counts"
[1] "Results stored at:/mnt/NAS_coruscant_datashare/haasf/madland_RNA-seq_Hoecker/DEGs_0.9"
[1] "SampleNames: cop_L" "SampleNames: WT_D"
[1] "LenGCTable: /mnt/NAS_coruscant_datashare/haasf/GeneAtlas_RNASeq/DEG_2nd_round/cosmoss_V3.3.release_2016-07-22.IsoformV31.fasta.length_GC_Contig_Daten_for_34840_1nd.csv"
[1] "myLenPos: 1"
[1] "myGCPos: 2"
[1] "rpkm: 0"
[1] "htseq: 0"
[1] "pvtedgeR: 0.001"
[1] "pvtDESeq2: 0.001"
[1] "pvtNOISeq: 0.9"
[1] "edgeRDir: edgeR"
[1] "DESeq2Dir: DESeq2"
[1] "NOISeqDir: NOISeq"
R version 4.0.5 (2021-03-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.2 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=de_DE.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=de_DE.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=de_DE.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] splines parallel stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] NOISeq_2.34.0 Matrix_1.3-3 vsn_3.58.0 gplots_3.1.1
[5] edgeR_3.32.1 limma_3.46.0 pals_1.7 gridExtra_2.3
[9] sjmisc_2.8.7 magick_2.7.2 pheatmap_1.0.12 RColorBrewer_1.1-2
[13] ggplot2_3.3.3 DESeq2_1.30.1 SummarizedExperiment_1.20.0 Biobase_2.50.0
[17] MatrixGenerics_1.2.1 matrixStats_0.58.0 GenomicRanges_1.42.0 GenomeInfoDb_1.26.7
[21] IRanges_2.24.1 S4Vectors_0.28.1 BiocGenerics_0.36.1
loaded via a namespace (and not attached):
[1] httr_1.4.2 maps_3.3.0 bit64_4.0.5 jsonlite_1.7.2 gtools_3.8.2
[6] BiocManager_1.30.15 affy_1.68.0 blob_1.2.1 GenomeInfoDbData_1.2.4 pillar_1.6.1
[11] RSQLite_2.2.7 lattice_0.20-44 glue_1.4.2 digest_0.6.27 XVector_0.30.0
[16] colorspace_2.0-1 preprocessCore_1.52.1 htmltools_0.5.1.1 XML_3.99-0.6 pkgconfig_2.0.3
[21] genefilter_1.72.1 zlibbioc_1.36.0 purrr_0.3.4 xtable_1.8-4 scales_1.1.1
[26] affyio_1.60.0 BiocParallel_1.24.1 tibble_3.1.2 annotate_1.68.0 generics_0.1.0
[31] farver_2.1.0 sjlabelled_1.1.8 ellipsis_0.3.2 withr_2.4.2 survival_3.2-11
[36] magrittr_2.0.1 crayon_1.4.1 memoise_2.0.0 tools_4.0.5 lifecycle_1.0.0
[41] munsell_0.5.0 locfit_1.5-9.4 DelayedArray_0.16.3 AnnotationDbi_1.52.0 compiler_4.0.5
[46] caTools_1.18.2 rlang_0.4.11 grid_4.0.5 RCurl_1.98-1.3 dichromat_2.0-0
[51] rstudioapi_0.13 htmlwidgets_1.5.3 crosstalk_1.1.1 bitops_1.0-7 labeling_0.4.2
[56] gtable_0.3.0 DBI_1.1.1 R6_2.5.0 knitr_1.33 dplyr_1.0.6
[61] bit_4.0.4 insight_0.14.0 KernSmooth_2.23-20 Rcpp_1.0.6 vctrs_0.3.8
[66] mapproj_1.2.7 geneplotter_1.68.0 tidyselect_1.1.1 xfun_0.23
sysname release
"Linux" "5.4.0-72-generic"
version nodename
"#80-Ubuntu SMP Mon Apr 12 17:35:00 UTC 2021" "Ben"
machine login
"x86_64" "haasf"
user effective_user
"haasf" "haasf"
[1] "cop_L" "cop_L.1" "cop_L.2" "WT_D" "WT_D.1" "WT_D.2"
cop_L cop_L.1 cop_L.2 WT_D WT_D.1 WT_D.2
Pp3c1_20V3.1 389 389 378 194 198 298
Pp3c1_40V3.1 257 243 207 439 523 588
Pp3c1_60V3.1 475 525 521 622 626 743
Pp3c1_70V3.1 378 389 382 459 526 643
Pp3c1_80V3.1 2 3 0 1 1 0
Pp3c1_100V3.1 556 527 565 576 539 761
[1] "Raw data row number: 31315"
[1] "Raw data column number: 6"
[1] "Filtered data row number: 19879"
[1] "Filtered data row number: 6"
[1] "edgeR is running with cop_L vs. WT_D"
[1] "DESeq2 is running with cop_L vs. WT_D"
[1] "NOISeq is running with cop_L vs. WT_D"
Filtering out low count features...
19063 features are to be kept for differential expression analysis with filtering method 1
[1] "GC content bias detection is to be computed for:"
[1] "cop_L" "cop_L.1" "cop_L.2" "WT_D" "WT_D.1" "WT_D.2"
[1] "cop_L"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-125.023 -35.313 1.216 25.711 215.536
Coefficients: (3 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 2.391e+02 5.665e+01 4.221 6.13e-05 ***
bx1 -1.856e+02 8.011e+01 -2.317 0.022953 *
bx2 NA NA NA NA
bx3 NA NA NA NA
bx4 -9.224e+06 1.643e+07 -0.561 0.576098
bx5 1.396e+03 2.293e+03 0.609 0.544206
bx6 -2.876e+02 1.655e+02 -1.738 0.085927 .
bx7 1.020e+02 7.236e+01 1.409 0.162519
bx8 2.254e+02 6.397e+01 3.523 0.000693 ***
bx9 3.232e+02 6.738e+01 4.796 6.92e-06 ***
bx10 4.347e+02 8.990e+01 4.835 5.94e-06 ***
bx11 -3.949e+01 2.900e+02 -0.136 0.892014
bx12 -9.665e+02 1.695e+03 -0.570 0.570143
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 56.65 on 84 degrees of freedom
Multiple R-squared: 0.8098, Adjusted R-squared: 0.7872
F-statistic: 35.77 on 10 and 84 DF, p-value: < 2.2e-16
[1] "cop_L.1"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-130.403 -37.445 0.235 27.958 230.619
Coefficients: (3 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 2.700e+02 5.887e+01 4.586 1.56e-05 ***
bx1 -2.158e+02 8.326e+01 -2.592 0.01124 *
bx2 NA NA NA NA
bx3 NA NA NA NA
bx4 -9.849e+06 1.708e+07 -0.577 0.56568
bx5 1.477e+03 2.383e+03 0.620 0.53688
bx6 -3.275e+02 1.720e+02 -1.904 0.06031 .
bx7 8.227e+01 7.520e+01 1.094 0.27708
bx8 1.999e+02 6.648e+01 3.007 0.00348 **
bx9 3.121e+02 7.002e+01 4.457 2.55e-05 ***
bx10 4.434e+02 9.343e+01 4.746 8.44e-06 ***
bx11 1.119e+01 3.014e+02 0.037 0.97048
bx12 -1.126e+03 1.762e+03 -0.639 0.52467
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 58.87 on 84 degrees of freedom
Multiple R-squared: 0.8118, Adjusted R-squared: 0.7894
F-statistic: 36.22 on 10 and 84 DF, p-value: < 2.2e-16
[1] "cop_L.2"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-124.08 -36.39 1.08 23.70 223.34
Coefficients: (3 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 2.709e+02 5.754e+01 4.709 9.74e-06 ***
bx1 -2.180e+02 8.138e+01 -2.679 0.00888 **
bx2 NA NA NA NA
bx3 NA NA NA NA
bx4 -9.469e+06 1.669e+07 -0.567 0.57205
bx5 1.432e+03 2.329e+03 0.615 0.54022
bx6 -3.342e+02 1.681e+02 -1.988 0.05005 .
bx7 7.848e+01 7.350e+01 1.068 0.28866
bx8 1.965e+02 6.498e+01 3.024 0.00331 **
bx9 2.988e+02 6.844e+01 4.366 3.59e-05 ***
bx10 4.292e+02 9.133e+01 4.700 1.01e-05 ***
bx11 1.216e+01 2.946e+02 0.041 0.96716
bx12 -1.068e+03 1.722e+03 -0.620 0.53664
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 57.54 on 84 degrees of freedom
Multiple R-squared: 0.8124, Adjusted R-squared: 0.7901
F-statistic: 36.38 on 10 and 84 DF, p-value: < 2.2e-16
[1] "WT_D"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-96.89 -24.21 0.00 22.48 104.53
Coefficients: (3 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 2.346e+02 3.839e+01 6.109 3.01e-08 ***
bx1 -1.508e+02 5.430e+01 -2.777 0.006758 **
bx2 NA NA NA NA
bx3 NA NA NA NA
bx4 -7.301e+06 1.114e+07 -0.655 0.513968
bx5 1.034e+03 1.554e+03 0.665 0.507711
bx6 -2.387e+02 1.122e+02 -2.128 0.036246 *
bx7 7.540e+01 4.904e+01 1.537 0.127938
bx8 1.472e+02 4.336e+01 3.394 0.001052 **
bx9 1.643e+02 4.567e+01 3.599 0.000539 ***
bx10 6.217e+01 6.094e+01 1.020 0.310526
bx11 7.100e+01 1.966e+02 0.361 0.718848
bx12 -6.607e+02 1.149e+03 -0.575 0.566847
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 38.39 on 84 degrees of freedom
Multiple R-squared: 0.7294, Adjusted R-squared: 0.6972
F-statistic: 22.65 on 10 and 84 DF, p-value: < 2.2e-16
[1] "WT_D.1"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-103.97 -24.06 0.00 26.80 112.40
Coefficients: (3 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 2.584e+02 4.164e+01 6.204 1.99e-08 ***
bx1 -1.648e+02 5.889e+01 -2.799 0.006354 **
bx2 NA NA NA NA
bx3 NA NA NA NA
bx4 -7.659e+06 1.208e+07 -0.634 0.527804
bx5 1.058e+03 1.685e+03 0.628 0.531801
bx6 -2.459e+02 1.217e+02 -2.022 0.046399 *
bx7 8.449e+01 5.319e+01 1.588 0.115969
bx8 1.607e+02 4.703e+01 3.416 0.000981 ***
bx9 1.771e+02 4.953e+01 3.576 0.000582 ***
bx10 6.102e+01 6.609e+01 0.923 0.358539
bx11 9.013e+01 2.132e+02 0.423 0.673561
bx12 -7.857e+02 1.246e+03 -0.630 0.530139
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 41.64 on 84 degrees of freedom
Multiple R-squared: 0.7234, Adjusted R-squared: 0.6905
F-statistic: 21.97 on 10 and 84 DF, p-value: < 2.2e-16
[1] "WT_D.2"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-127.39 -30.89 0.00 33.29 127.21
Coefficients: (3 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 2.635e+02 4.955e+01 5.318 8.54e-07 ***
bx1 -1.617e+02 7.008e+01 -2.307 0.0235 *
bx2 NA NA NA NA
bx3 NA NA NA NA
bx4 -9.025e+06 1.438e+07 -0.628 0.5318
bx5 1.293e+03 2.006e+03 0.645 0.5210
bx6 -2.518e+02 1.448e+02 -1.740 0.0856 .
bx7 1.477e+02 6.330e+01 2.333 0.0220 *
bx8 2.381e+02 5.596e+01 4.254 5.42e-05 ***
bx9 2.699e+02 5.894e+01 4.578 1.61e-05 ***
bx10 1.142e+02 7.865e+01 1.452 0.1503
bx11 1.096e+02 2.537e+02 0.432 0.6668
bx12 -8.661e+02 1.483e+03 -0.584 0.5608
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 49.55 on 84 degrees of freedom
Multiple R-squared: 0.7454, Adjusted R-squared: 0.7151
F-statistic: 24.6 on 10 and 84 DF, p-value: < 2.2e-16
[1] "GC content bias detection is to be computed for:"
[1] "cop_L" "WT_D"
[1] "cop_L"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-12.5962 -3.6172 0.1187 2.5805 22.2805
Coefficients: (3 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 2.594e+01 5.746e+00 4.515 2.05e-05 ***
bx1 -2.059e+01 8.126e+00 -2.534 0.01314 *
bx2 NA NA NA NA
bx3 NA NA NA NA
bx4 -9.458e+05 1.667e+06 -0.567 0.57196
bx5 1.426e+02 2.325e+02 0.613 0.54135
bx6 -3.155e+01 1.679e+01 -1.879 0.06366 .
bx7 8.658e+00 7.339e+00 1.180 0.24149
bx8 2.058e+01 6.489e+00 3.172 0.00211 **
bx9 3.095e+01 6.835e+00 4.528 1.95e-05 ***
bx10 4.330e+01 9.120e+00 4.749 8.34e-06 ***
bx11 -6.171e-01 2.942e+01 -0.021 0.98331
bx12 -1.049e+02 1.720e+02 -0.610 0.54356
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 5.746 on 84 degrees of freedom
Multiple R-squared: 0.811, Adjusted R-squared: 0.7885
F-statistic: 36.04 on 10 and 84 DF, p-value: < 2.2e-16
[1] "WT_D"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-11.822 -2.934 0.000 3.005 12.391
Coefficients: (3 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 2.741e+01 4.653e+00 5.892 7.67e-08 ***
bx1 -1.735e+01 6.580e+00 -2.636 0.009977 **
bx2 NA NA NA NA
bx3 NA NA NA NA
bx4 -8.674e+05 1.350e+06 -0.643 0.522226
bx5 1.223e+02 1.883e+02 0.649 0.517843
bx6 -2.680e+01 1.359e+01 -1.971 0.051996 .
bx7 1.082e+01 5.943e+00 1.820 0.072351 .
bx8 1.937e+01 5.255e+00 3.686 0.000403 ***
bx9 2.174e+01 5.535e+00 3.928 0.000175 ***
bx10 8.307e+00 7.385e+00 1.125 0.263832
bx11 9.709e+00 2.382e+01 0.408 0.684611
bx12 -8.352e+01 1.393e+02 -0.600 0.550294
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 4.653 on 84 degrees of freedom
Multiple R-squared: 0.7335, Adjusted R-squared: 0.7018
F-statistic: 23.12 on 10 and 84 DF, p-value: < 2.2e-16
[1] "cop_L"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-12.5962 -3.6172 0.1187 2.5805 22.2805
Coefficients: (3 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 2.594e+01 5.746e+00 4.515 2.05e-05 ***
bx1 -2.059e+01 8.126e+00 -2.534 0.01314 *
bx2 NA NA NA NA
bx3 NA NA NA NA
bx4 -9.458e+05 1.667e+06 -0.567 0.57196
bx5 1.426e+02 2.325e+02 0.613 0.54135
bx6 -3.155e+01 1.679e+01 -1.879 0.06366 .
bx7 8.658e+00 7.339e+00 1.180 0.24149
bx8 2.058e+01 6.489e+00 3.172 0.00211 **
bx9 3.095e+01 6.835e+00 4.528 1.95e-05 ***
bx10 4.330e+01 9.120e+00 4.749 8.34e-06 ***
bx11 -6.171e-01 2.942e+01 -0.021 0.98331
bx12 -1.049e+02 1.720e+02 -0.610 0.54356
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 5.746 on 84 degrees of freedom
Multiple R-squared: 0.811, Adjusted R-squared: 0.7885
F-statistic: 36.04 on 10 and 84 DF, p-value: < 2.2e-16
[1] "WT_D"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-11.822 -2.934 0.000 3.005 12.391
Coefficients: (3 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 2.741e+01 4.653e+00 5.892 7.67e-08 ***
bx1 -1.735e+01 6.580e+00 -2.636 0.009977 **
bx2 NA NA NA NA
bx3 NA NA NA NA
bx4 -8.674e+05 1.350e+06 -0.643 0.522226
bx5 1.223e+02 1.883e+02 0.649 0.517843
bx6 -2.680e+01 1.359e+01 -1.971 0.051996 .
bx7 1.082e+01 5.943e+00 1.820 0.072351 .
bx8 1.937e+01 5.255e+00 3.686 0.000403 ***
bx9 2.174e+01 5.535e+00 3.928 0.000175 ***
bx10 8.307e+00 7.385e+00 1.125 0.263832
bx11 9.709e+00 2.382e+01 0.408 0.684611
bx12 -8.352e+01 1.393e+02 -0.600 0.550294
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 4.653 on 84 degrees of freedom
Multiple R-squared: 0.7335, Adjusted R-squared: 0.7018
F-statistic: 23.12 on 10 and 84 DF, p-value: < 2.2e-16
[1] "Length bias detection information is to be computed for:"
[1] "cop_L" "cop_L.1" "cop_L.2" "WT_D" "WT_D.1" "WT_D.2"
[1] "cop_L"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-101.950 -26.745 -7.546 29.859 123.912
Coefficients: (1 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 819.19 47.45 17.266 < 2e-16 ***
bx1 -783.02 66.51 -11.773 < 2e-16 ***
bx2 -758.58 72.85 -10.413 < 2e-16 ***
bx3 -269.36 61.43 -4.385 3.42e-05 ***
bx4 -460.75 54.30 -8.485 7.63e-13 ***
bx5 -347.10 53.67 -6.467 6.79e-09 ***
bx6 -419.06 55.69 -7.525 6.05e-11 ***
bx7 -357.85 60.76 -5.890 8.20e-08 ***
bx8 -324.44 72.81 -4.456 2.62e-05 ***
bx9 -365.91 110.31 -3.317 0.00136 **
bx10 -28.96 294.21 -0.098 0.92182
bx11 -4208.36 5523.29 -0.762 0.44829
bx12 79283.97 104579.01 0.758 0.45055
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 47.45 on 82 degrees of freedom
Multiple R-squared: 0.766, Adjusted R-squared: 0.7317
F-statistic: 22.37 on 12 and 82 DF, p-value: < 2.2e-16
[1] "cop_L.1"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-95.238 -29.923 -0.174 31.508 135.801
Coefficients: (1 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 806.632 49.549 16.280 < 2e-16 ***
bx1 -768.554 69.456 -11.065 < 2e-16 ***
bx2 -752.427 76.077 -9.890 1.23e-15 ***
bx3 -211.109 64.157 -3.290 0.00148 **
bx4 -435.768 56.711 -7.684 2.94e-11 ***
bx5 -319.820 56.052 -5.706 1.78e-07 ***
bx6 -403.360 58.157 -6.936 8.55e-10 ***
bx7 -339.520 63.451 -5.351 7.78e-07 ***
bx8 -312.044 76.032 -4.104 9.53e-05 ***
bx9 -361.513 115.199 -3.138 0.00236 **
bx10 -7.324 307.247 -0.024 0.98104
bx11 -4372.896 5768.067 -0.758 0.45055
bx12 82326.314 109213.688 0.754 0.45312
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 49.55 on 82 degrees of freedom
Multiple R-squared: 0.7403, Adjusted R-squared: 0.7022
F-statistic: 19.47 on 12 and 82 DF, p-value: < 2.2e-16
[1] "cop_L.2"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-84.460 -30.715 -2.425 30.843 134.378
Coefficients: (1 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 842.34 47.64 17.682 < 2e-16 ***
bx1 -804.26 66.78 -12.044 < 2e-16 ***
bx2 -790.96 73.14 -10.814 < 2e-16 ***
bx3 -286.16 61.68 -4.639 1.31e-05 ***
bx4 -474.39 54.52 -8.701 2.84e-13 ***
bx5 -364.90 53.89 -6.771 1.78e-09 ***
bx6 -435.06 55.91 -7.781 1.90e-11 ***
bx7 -373.51 61.00 -6.123 3.03e-08 ***
bx8 -340.99 73.10 -4.665 1.19e-05 ***
bx9 -370.96 110.76 -3.349 0.00123 **
bx10 -72.31 295.40 -0.245 0.80723
bx11 -3371.29 5545.67 -0.608 0.54492
bx12 62391.10 105002.70 0.594 0.55402
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 47.64 on 82 degrees of freedom
Multiple R-squared: 0.7757, Adjusted R-squared: 0.7428
F-statistic: 23.63 on 12 and 82 DF, p-value: < 2.2e-16
[1] "WT_D"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-60.041 -18.391 -0.077 19.747 87.484
Coefficients: (1 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 1106.895 30.347 36.475 < 2e-16 ***
bx1 -1062.999 42.540 -24.988 < 2e-16 ***
bx2 -1027.771 46.595 -22.058 < 2e-16 ***
bx3 -801.610 39.294 -20.400 < 2e-16 ***
bx4 -883.300 34.733 -25.431 < 2e-16 ***
bx5 -773.758 34.330 -22.539 < 2e-16 ***
bx6 -727.594 35.619 -20.427 < 2e-16 ***
bx7 -695.061 38.862 -17.885 < 2e-16 ***
bx8 -539.748 46.567 -11.591 < 2e-16 ***
bx9 -672.727 70.556 -9.535 6.23e-15 ***
bx10 -3.843 188.179 -0.020 0.9838
bx11 -7501.018 3532.760 -2.123 0.0367 *
bx12 140249.340 66889.959 2.097 0.0391 *
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 30.35 on 82 degrees of freedom
Multiple R-squared: 0.9595, Adjusted R-squared: 0.9536
F-statistic: 162 on 12 and 82 DF, p-value: < 2.2e-16
[1] "WT_D.1"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-65.44 -19.27 0.00 21.31 98.22
Coefficients: (1 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 1170.28 33.60 34.830 < 2e-16 ***
bx1 -1120.54 47.10 -23.791 < 2e-16 ***
bx2 -1079.57 51.59 -20.926 < 2e-16 ***
bx3 -822.63 43.51 -18.908 < 2e-16 ***
bx4 -920.27 38.46 -23.930 < 2e-16 ***
bx5 -805.76 38.01 -21.199 < 2e-16 ***
bx6 -754.33 39.44 -19.127 < 2e-16 ***
bx7 -723.40 43.03 -16.812 < 2e-16 ***
bx8 -555.60 51.56 -10.776 < 2e-16 ***
bx9 -704.68 78.12 -9.020 6.55e-14 ***
bx10 18.14 208.35 0.087 0.9308
bx11 -7975.98 3911.48 -2.039 0.0447 *
bx12 149228.49 74060.63 2.015 0.0472 *
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 33.6 on 82 degrees of freedom
Multiple R-squared: 0.9551, Adjusted R-squared: 0.9485
F-statistic: 145.4 on 12 and 82 DF, p-value: < 2.2e-16
[1] "WT_D.2"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-78.33 -23.70 0.00 26.03 110.89
Coefficients: (1 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 1346.91 39.26 34.305 < 2e-16 ***
bx1 -1291.29 55.04 -23.462 < 2e-16 ***
bx2 -1251.98 60.28 -20.768 < 2e-16 ***
bx3 -923.68 50.84 -18.169 < 2e-16 ***
bx4 -1044.85 44.94 -23.251 < 2e-16 ***
bx5 -904.99 44.42 -20.376 < 2e-16 ***
bx6 -844.78 46.08 -18.332 < 2e-16 ***
bx7 -814.09 50.28 -16.192 < 2e-16 ***
bx8 -618.69 60.25 -10.269 < 2e-16 ***
bx9 -788.13 91.28 -8.634 3.85e-13 ***
bx10 10.55 243.46 0.043 0.9655
bx11 -8527.05 4570.64 -1.866 0.0657 .
bx12 158853.47 86541.35 1.836 0.0700 .
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 39.26 on 82 degrees of freedom
Multiple R-squared: 0.9542, Adjusted R-squared: 0.9474
F-statistic: 142.2 on 12 and 82 DF, p-value: < 2.2e-16
[1] "Length bias detection information is to be computed for:"
[1] "cop_L" "WT_D"
[1] "cop_L"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-9.366 -2.903 -0.307 3.021 13.071
Coefficients: (1 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 81.925 4.793 17.091 < 2e-16 ***
bx1 -78.196 6.719 -11.638 < 2e-16 ***
bx2 -76.423 7.360 -10.384 < 2e-16 ***
bx3 -25.459 6.207 -4.102 9.60e-05 ***
bx4 -45.504 5.486 -8.294 1.82e-12 ***
bx5 -34.257 5.422 -6.318 1.30e-08 ***
bx6 -41.742 5.626 -7.419 9.75e-11 ***
bx7 -35.532 6.138 -5.789 1.26e-07 ***
bx8 -32.463 7.355 -4.413 3.07e-05 ***
bx9 -36.429 11.144 -3.269 0.00158 **
bx10 -3.707 29.723 -0.125 0.90104
bx11 -395.034 558.002 -0.708 0.48099
bx12 7403.692 10565.313 0.701 0.48544
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 4.793 on 82 degrees of freedom
Multiple R-squared: 0.761, Adjusted R-squared: 0.726
F-statistic: 21.76 on 12 and 82 DF, p-value: < 2.2e-16
[1] "WT_D"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-7.334 -2.318 0.000 2.369 10.694
Coefficients: (1 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 130.676 3.707 35.250 < 2e-16 ***
bx1 -125.303 5.197 -24.113 < 2e-16 ***
bx2 -121.107 5.692 -21.277 < 2e-16 ***
bx3 -92.093 4.800 -19.186 < 2e-16 ***
bx4 -102.834 4.243 -24.237 < 2e-16 ***
bx5 -89.720 4.194 -21.394 < 2e-16 ***
bx6 -84.076 4.351 -19.323 < 2e-16 ***
bx7 -80.635 4.747 -16.986 < 2e-16 ***
bx8 -61.979 5.689 -10.895 < 2e-16 ***
bx9 -78.205 8.619 -9.074 5.14e-14 ***
bx10 1.004 22.987 0.044 0.9653
bx11 -869.141 431.551 -2.014 0.0473 *
bx12 16228.206 8171.072 1.986 0.0504 .
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 3.707 on 82 degrees of freedom
Multiple R-squared: 0.9565, Adjusted R-squared: 0.9501
F-statistic: 150.1 on 12 and 82 DF, p-value: < 2.2e-16
[1] "cop_L"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-9.366 -2.903 -0.307 3.021 13.071
Coefficients: (1 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 81.925 4.793 17.091 < 2e-16 ***
bx1 -78.196 6.719 -11.638 < 2e-16 ***
bx2 -76.423 7.360 -10.384 < 2e-16 ***
bx3 -25.459 6.207 -4.102 9.60e-05 ***
bx4 -45.504 5.486 -8.294 1.82e-12 ***
bx5 -34.257 5.422 -6.318 1.30e-08 ***
bx6 -41.742 5.626 -7.419 9.75e-11 ***
bx7 -35.532 6.138 -5.789 1.26e-07 ***
bx8 -32.463 7.355 -4.413 3.07e-05 ***
bx9 -36.429 11.144 -3.269 0.00158 **
bx10 -3.707 29.723 -0.125 0.90104
bx11 -395.034 558.002 -0.708 0.48099
bx12 7403.692 10565.313 0.701 0.48544
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 4.793 on 82 degrees of freedom
Multiple R-squared: 0.761, Adjusted R-squared: 0.726
F-statistic: 21.76 on 12 and 82 DF, p-value: < 2.2e-16
[1] "WT_D"
Call:
lm(formula = datos[, i] ~ bx)
Residuals:
Min 1Q Median 3Q Max
-7.334 -2.318 0.000 2.369 10.694
Coefficients: (1 not defined because of singularities)
Estimate Std. Error t value Pr(>|t|)
(Intercept) 130.676 3.707 35.250 < 2e-16 ***
bx1 -125.303 5.197 -24.113 < 2e-16 ***
bx2 -121.107 5.692 -21.277 < 2e-16 ***
bx3 -92.093 4.800 -19.186 < 2e-16 ***
bx4 -102.834 4.243 -24.237 < 2e-16 ***
bx5 -89.720 4.194 -21.394 < 2e-16 ***
bx6 -84.076 4.351 -19.323 < 2e-16 ***
bx7 -80.635 4.747 -16.986 < 2e-16 ***
bx8 -61.979 5.689 -10.895 < 2e-16 ***
bx9 -78.205 8.619 -9.074 5.14e-14 ***
bx10 1.004 22.987 0.044 0.9653
bx11 -869.141 431.551 -2.014 0.0473 *
bx12 16228.206 8171.072 1.986 0.0504 .
bx13 NA NA NA NA
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 3.707 on 82 degrees of freedom
Multiple R-squared: 0.9565, Adjusted R-squared: 0.9501
F-statistic: 150.1 on 12 and 82 DF, p-value: < 2.2e-16
[1] "Reference sample is: cop_L"
[1] "Confidence intervals for median of M:"
0.5% 99.5% Diagnostic Test
cop_L.1 "-0.0145929491870359" "-0.00775372645643015" "FAILED"
cop_L.2 "-0.00798278608538002" "-0.000715147275008594" "FAILED"
WT_D "0.0308637484636128" "0.0919635352534783" "FAILED"
WT_D.1 "0.0265261668477399" "0.0895998059181934" "FAILED"
WT_D.2 "0.0623193111664229" "0.12452993935426" "FAILED"
[1] "Diagnostic test: FAILED. Normalization is required to correct this bias."
[1] "WARNING: Your experiment has biological replicates. You should consider using NOISeqBIO instead of NOISeq."
[1] "Computing (M,D) values..."
[1] "Computing probability of differential expression..."
[1] "WARNING: Your experiment has biological replicates. You should consider using NOISeqBIO instead of NOISeq."
[1] "Computing (M,D) values..."
[1] "Computing probability of differential expression..."
[1] "WARNING: Your experiment has biological replicates. You should consider using NOISeqBIO instead of NOISeq."
[1] "Computing (M,D) values..."
[1] "Computing probability of differential expression..."
Computing Z values...
Filtering out low count features...
18413 features are to be kept for differential expression analysis with filtering method 1
...k-means clustering done
Size of 15 clusters:
[1] 69 4 46 236 1650 524 3990 167 10355 13 34 239 73 20 993
Resampling cluster...[1] 1
[1] 2
[1] 3
[1] 4
[1] 5
Size of 15 subclusters of cluster: 5
[1] 64 190 92 176 108 131 87 48 104 76 201 115 63 68 127
[1] 6
[1] 7
Size of 15 subclusters of cluster: 7
[1] 156 313 228 382 340 276 487 240 206 166 248 278 121 156 393
[1] 8
[1] 9
Size of 15 subclusters of cluster: 9
[1] 847 600 692 653 584 1670 292 344 446 547 1092 478 782 392 936
[1] 10
[1] 11
[1] 12
[1] 13
[1] 14
[1] 15
Computing Z for noise...
Computing probability of differential expression...
p0 = 0.0777697162759164
Probability
Min. 1st Qu. Median Mean 3rd Qu. Max. NA's
0.0000 0.9611 0.9980 0.9189 1.0000 1.0000 650
Computing Z values...
Filtering out low count features...
19063 features are to be kept for differential expression analysis with filtering method 1
...k-means clustering done
Size of 15 clusters:
[1] 15 211 1660 1134 220 4746 33 641 9902 68 74 282 20 53 4
Resampling cluster...[1] 1
[1] 2
[1] 3
Size of 15 subclusters of cluster: 3
[1] 57 47 150 91 84 69 128 180 175 78 106 139 119 67 170
[1] 4
Size of 15 subclusters of cluster: 4
[1] 67 28 140 118 97 144 88 77 40 66 62 49 44 57 57
[1] 5
[1] 6
Size of 15 subclusters of cluster: 6
[1] 527 171 254 323 232 366 269 397 477 283 520 231 144 327 225
[1] 7
[1] 8
[1] 9
Size of 15 subclusters of cluster: 9
[1] 473 268 474 350 1994 335 581 777 295 1010 507 633 765 721 719
[1] 10
[1] 11
[1] 12
[1] 13
[1] 14
[1] 15
Computing Z for noise...
Computing probability of differential expression...
p0 = 0.0814153335043643
Probability
Min. 1st Qu. Median Mean 3rd Qu. Max.
0.0000 0.9545 0.9984 0.9150 1.0000 1.0000
Computing Z values...
Filtering out low count features...
19063 features are to be kept for differential expression analysis with filtering method 1
...k-means clustering done
Size of 15 clusters:
[1] 1423 381 2706 123 107 9 43 1014 7927 409 44 4532 261 75 9
Resampling cluster...[1] 1
Size of 15 subclusters of cluster: 1
[1] 79 96 88 173 70 64 55 123 130 64 96 112 101 68 104
[1] 2
[1] 3
Size of 15 subclusters of cluster: 3
[1] 201 291 184 163 106 196 240 111 171 144 151 207 163 83 295
[1] 4
[1] 5
[1] 6
[1] 7
[1] 8
Size of 15 subclusters of cluster: 8
[1] 49 73 73 84 85 93 69 61 74 47 108 81 36 49 32
[1] 9
Size of 15 subclusters of cluster: 9
[1] 315 256 453 399 191 250 292 2041 626 601 453 776 387 484 403
[1] 10
[1] 11
[1] 12
Size of 15 subclusters of cluster: 12
[1] 358 153 468 299 310 267 422 420 195 298 164 206 408 251 313
[1] 13
[1] 14
[1] 15
Computing Z for noise...
Computing probability of differential expression...
p0 = 0.105836543597382
Probability
Min. 1st Qu. Median Mean 3rd Qu. Max.
0.0000 0.9144 0.9958 0.8890 1.0000 1.0000
[1] "10749 differentially expressed features"
[1] "5445 differentially expressed features (up in first condition)"
[1] "5304 differentially expressed features (down in first condition)"
[1] "9675 differentially expressed features"
[1] "5324 differentially expressed features (up in first condition)"
[1] "4351 differentially expressed features (down in first condition)"
[1] "9419 differentially expressed features"
[1] "12400 differentially expressed features"
[1] "7200 differentially expressed features"
[1] "9839 differentially expressed features"
[1] "9361 differentially expressed features"
[1] "12292 differentially expressed features"
[1] "15254 differentially expressed features"
[1] "10749 differentially expressed features"
[1] "14586 differentially expressed features"
[1] "9675 differentially expressed features"
[1] "9419 differentially expressed features"
[1] "7200 differentially expressed features"
[1] "DEGs edgeR"
[1] 14938
[1] "DEGs deseq2"
[1] 13221
[1] "DEGs noiseq"
[1] 9419
[1] "DEGs noiseqbio"
[1] 10749
[1] "DEGs intersection without direction check (four methods)"
[1] 9089
[1] "Pp3c1_40V3.1" "Pp3c1_70V3.1" "Pp3c1_190V3.1" "Pp3c1_200V3.1" "Pp3c1_370V3.1" "Pp3c1_400V3.1" "Pp3c1_430V3.1"
[8] "Pp3c1_470V3.1" "Pp3c1_540V3.1" "Pp3c1_580V3.1" "Pp3c1_620V3.1" "Pp3c1_680V3.1" "Pp3c1_690V3.1" "Pp3c1_890V3.1"
[15] "Pp3c1_900V3.1" "Pp3c1_950V3.1" "Pp3c1_1000V3.1" "Pp3c1_1160V3.1" "Pp3c1_1240V3.1" "Pp3c1_1260V3.1" "Pp3c1_1330V3.1"
[22] "Pp3c1_1360V3.1" "Pp3c1_1390V3.1" "Pp3c1_1570V3.1" "Pp3c1_1790V3.1" "Pp3c1_1800V3.1" "Pp3c1_1810V3.1" "Pp3c1_1860V3.1"
[29] "Pp3c1_1870V3.1" "Pp3c1_1940V3.1" "Pp3c1_2010V3.1" "Pp3c1_2170V3.1" "Pp3c1_2210V3.1" "Pp3c1_2220V3.1" "Pp3c1_2390V3.1"
[36] "Pp3c1_2420V3.1" "Pp3c1_2510V3.1" "Pp3c1_2540V3.1" "Pp3c1_2740V3.1" "Pp3c1_2770V3.1" "Pp3c1_2880V3.1" "Pp3c1_2920V3.1"
[43] "Pp3c1_2960V3.1" "Pp3c1_2980V3.1" "Pp3c1_3040V3.1" "Pp3c1_3140V3.1" "Pp3c1_3160V3.1" "Pp3c1_3180V3.1" "Pp3c1_3200V3.1"
[50] "Pp3c1_3210V3.1" "Pp3c1_3220V3.1" "Pp3c1_3260V3.1" "Pp3c1_3300V3.1" "Pp3c1_3500V3.1" "Pp3c1_3520V3.1" "Pp3c1_3590V3.1"
[57] "Pp3c1_3610V3.1" "Pp3c1_3700V3.1" "Pp3c1_3730V3.1" "Pp3c1_3750V3.1" "Pp3c1_3890V3.1" "Pp3c1_4010V3.1" "Pp3c1_4030V3.1"
[64] "Pp3c1_4050V3.1" "Pp3c1_4140V3.1" "Pp3c1_4180V3.1" "Pp3c1_4270V3.1" "Pp3c1_4350V3.1" "Pp3c1_4400V3.1" "Pp3c1_4470V3.1"
[71] "Pp3c1_4510V3.1" "Pp3c1_4600V3.1" "Pp3c1_4750V3.1" "Pp3c1_4990V3.1" "Pp3c1_5050V3.1" "Pp3c1_5280V3.1" "Pp3c1_5300V3.1"
[78] "Pp3c1_5320V3.1" "Pp3c1_5460V3.1" "Pp3c1_5570V3.1" "Pp3c1_5800V3.1" "Pp3c1_5820V3.1" "Pp3c1_5850V3.1" "Pp3c1_5870V3.1"
[85] "Pp3c1_6020V3.1" "Pp3c1_6050V3.1" "Pp3c1_6090V3.1" "Pp3c1_6110V3.1" "Pp3c1_6120V3.1" "Pp3c1_6130V3.1" "Pp3c1_6272V3.1"
[92] "Pp3c1_6280V3.1" "Pp3c1_6360V3.1" "Pp3c1_6450V3.1" "Pp3c1_6470V3.1" "Pp3c1_6480V3.1" "Pp3c1_6500V3.1" "Pp3c1_6570V3.1"
[99] "Pp3c1_6640V3.1" "Pp3c1_6750V3.1" "Pp3c1_6930V3.1" "Pp3c1_6950V3.1" "Pp3c1_7010V3.1" "Pp3c1_7030V3.1" "Pp3c1_7090V3.1"
[106] "Pp3c1_7160V3.1" "Pp3c1_7170V3.1" "Pp3c1_7220V3.1" "Pp3c1_7300V3.1" "Pp3c1_7360V3.1" "Pp3c1_7370V3.1" "Pp3c1_7380V3.1"
[113] "Pp3c1_7390V3.1" "Pp3c1_7430V3.1" "Pp3c1_7450V3.1" "Pp3c1_7500V3.1" "Pp3c1_7520V3.1" "Pp3c1_7540V3.1" "Pp3c1_7590V3.1"
[120] "Pp3c1_7710V3.1" "Pp3c1_7720V3.1" "Pp3c1_7800V3.1" "Pp3c1_7810V3.1" "Pp3c1_7830V3.1" "Pp3c1_7880V3.1" "Pp3c1_7950V3.1"
[127] "Pp3c1_8060V3.1" "Pp3c1_8080V3.1" "Pp3c1_8110V3.1" "Pp3c1_8170V3.1" "Pp3c1_8190V3.1" "Pp3c1_8210V3.1" "Pp3c1_8280V3.1"
[134] "Pp3c1_8290V3.1" "Pp3c1_8400V3.1" "Pp3c1_8450V3.1" "Pp3c1_8530V3.1" "Pp3c1_8550V3.1" "Pp3c1_8870V3.1" "Pp3c1_8890V3.1"
[141] "Pp3c1_9180V3.1" "Pp3c1_9250V3.1" "Pp3c1_9290V3.1" "Pp3c1_9320V3.1" "Pp3c1_9560V3.1" "Pp3c1_9600V3.1" "Pp3c1_9630V3.1"
[148] "Pp3c1_9790V3.1" "Pp3c1_9860V3.1" "Pp3c1_9896V3.1" "Pp3c1_9970V3.1" "Pp3c1_10010V3.1" "Pp3c1_10040V3.1" "Pp3c1_10080V3.1"
[155] "Pp3c1_10090V3.1" "Pp3c1_10100V3.1" "Pp3c1_10200V3.1" "Pp3c1_10220V3.1" "Pp3c1_10400V3.1" "Pp3c1_10470V3.1" "Pp3c1_10530V3.1"
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[687] "Pp3c2_4790V3.1" "Pp3c2_5130V3.1" "Pp3c2_5260V3.1" "Pp3c2_5280V3.1" "Pp3c2_5310V3.1" "Pp3c2_5400V3.1" "Pp3c2_5440V3.1"
[694] "Pp3c2_5450V3.1" "Pp3c2_5460V3.1" "Pp3c2_5490V3.1" "Pp3c2_5520V3.1" "Pp3c2_5560V3.1" "Pp3c2_5625V3.1" "Pp3c2_5780V3.1"
[701] "Pp3c2_5910V3.1" "Pp3c2_5960V3.1" "Pp3c2_5990V3.1" "Pp3c2_6040V3.1" "Pp3c2_6080V3.1" "Pp3c2_6132V3.1" "Pp3c2_6160V3.1"
[708] "Pp3c2_6200V3.1" "Pp3c2_6220V3.1" "Pp3c2_6240V3.1" "Pp3c2_6370V3.1" "Pp3c2_6410V3.1" "Pp3c2_6560V3.1" "Pp3c2_6630V3.1"
[715] "Pp3c2_6650V3.1" "Pp3c2_6690V3.1" "Pp3c2_6730V3.1" "Pp3c2_6740V3.1" "Pp3c2_6750V3.1" "Pp3c2_6770V3.1" "Pp3c2_6800V3.1"
[722] "Pp3c2_7120V3.1" "Pp3c2_7230V3.1" "Pp3c2_7480V3.1" "Pp3c2_7620V3.1" "Pp3c2_7760V3.1" "Pp3c2_7790V3.1" "Pp3c2_7810V3.1"
[729] "Pp3c2_7910V3.1" "Pp3c2_7940V3.1" "Pp3c2_8099V3.1" "Pp3c2_8340V3.1" "Pp3c2_8360V3.1" "Pp3c2_8410V3.1" "Pp3c2_8420V3.1"
[736] "Pp3c2_8470V3.1" "Pp3c2_8570V3.1" "Pp3c2_8610V3.1" "Pp3c2_8660V3.1" "Pp3c2_8770V3.1" "Pp3c2_8820V3.1" "Pp3c2_8880V3.1"
[743] "Pp3c2_8960V3.1" "Pp3c2_9020V3.1" "Pp3c2_9080V3.1" "Pp3c2_9140V3.1" "Pp3c2_9150V3.1" "Pp3c2_9310V3.1" "Pp3c2_9460V3.1"
[750] "Pp3c2_9470V3.1" "Pp3c2_9490V3.1" "Pp3c2_9610V3.1" "Pp3c2_9630V3.1" "Pp3c2_9790V3.1" "Pp3c2_9813V3.1" "Pp3c2_9820V3.1"
[757] "Pp3c2_9830V3.1" "Pp3c2_9850V3.1" "Pp3c2_9870V3.1" "Pp3c2_9940V3.1" "Pp3c2_9980V3.1" "Pp3c2_10070V3.1" "Pp3c2_10100V3.1"
[764] "Pp3c2_10220V3.1" "Pp3c2_10260V3.1" "Pp3c2_10280V3.1" "Pp3c2_10310V3.1" "Pp3c2_10350V3.1" "Pp3c2_10530V3.1" "Pp3c2_10610V3.1"
[771] "Pp3c2_10630V3.1" "Pp3c2_10900V3.1" "Pp3c2_11030V3.1" "Pp3c2_11130V3.1" "Pp3c2_11190V3.1" "Pp3c2_11210V3.1" "Pp3c2_11250V3.1"
[778] "Pp3c2_11310V3.1" "Pp3c2_11370V3.1" "Pp3c2_11380V3.1" "Pp3c2_11410V3.1" "Pp3c2_11490V3.1" "Pp3c2_11540V3.1" "Pp3c2_11670V3.1"
[785] "Pp3c2_11730V3.1" "Pp3c2_11820V3.1" "Pp3c2_11850V3.1" "Pp3c2_11870V3.1" "Pp3c2_11890V3.1" "Pp3c2_12080V3.1" "Pp3c2_12120V3.1"
[792] "Pp3c2_12150V3.1" "Pp3c2_12240V3.1" "Pp3c2_12290V3.1" "Pp3c2_12320V3.1" "Pp3c2_12550V3.1" "Pp3c2_12620V3.1" "Pp3c2_12670V3.1"
[799] "Pp3c2_12680V3.1" "Pp3c2_12740V3.1" "Pp3c2_13250V3.1" "Pp3c2_13270V3.1" "Pp3c2_13280V3.1" "Pp3c2_13290V3.1" "Pp3c2_13300V3.1"
[806] "Pp3c2_13330V3.1" "Pp3c2_13370V3.1" "Pp3c2_13400V3.1" "Pp3c2_13410V3.1" "Pp3c2_13420V3.1" "Pp3c2_13560V3.1" "Pp3c2_13590V3.1"
[813] "Pp3c2_13670V3.1" "Pp3c2_13690V3.1" "Pp3c2_13790V3.1" "Pp3c2_13820V3.1" "Pp3c2_13870V3.1" "Pp3c2_13880V3.1" "Pp3c2_13930V3.1"
[820] "Pp3c2_13970V3.1" "Pp3c2_14050V3.1" "Pp3c2_14060V3.1" "Pp3c2_14090V3.1" "Pp3c2_14120V3.1" "Pp3c2_14160V3.1" "Pp3c2_14270V3.1"
[827] "Pp3c2_14290V3.1" "Pp3c2_14300V3.1" "Pp3c2_14350V3.1" "Pp3c2_14400V3.1" "Pp3c2_14410V3.1" "Pp3c2_14470V3.1" "Pp3c2_14510V3.1"
[834] "Pp3c2_14520V3.1" "Pp3c2_14560V3.1" "Pp3c2_14570V3.1" "Pp3c2_14600V3.1" "Pp3c2_14610V3.1" "Pp3c2_14800V3.1" "Pp3c2_14820V3.1"
[841] "Pp3c2_14930V3.1" "Pp3c2_15020V3.1" "Pp3c2_15060V3.1" "Pp3c2_15140V3.1" "Pp3c2_15180V3.1" "Pp3c2_15200V3.1" "Pp3c2_15250V3.1"
[848] "Pp3c2_15400V3.1" "Pp3c2_15430V3.1" "Pp3c2_15470V3.1" "Pp3c2_15480V3.1" "Pp3c2_15490V3.1" "Pp3c2_15500V3.1" "Pp3c2_15510V3.1"
[855] "Pp3c2_15820V3.1" "Pp3c2_15860V3.1" "Pp3c2_15900V3.1" "Pp3c2_15950V3.1" "Pp3c2_16030V3.1" "Pp3c2_16160V3.1" "Pp3c2_16250V3.1"
[862] "Pp3c2_16300V3.1" "Pp3c2_16310V3.1" "Pp3c2_16330V3.1" "Pp3c2_16610V3.1" "Pp3c2_16660V3.1" "Pp3c2_16671V3.1" "Pp3c2_16680V3.1"
[869] "Pp3c2_16720V3.1" "Pp3c2_16770V3.1" "Pp3c2_16830V3.1" "Pp3c2_16950V3.1" "Pp3c2_17000V3.1" "Pp3c2_17040V3.1" "Pp3c2_17070V3.1"
[876] "Pp3c2_17110V3.1" "Pp3c2_17140V3.1" "Pp3c2_17160V3.1" "Pp3c2_17270V3.1" "Pp3c2_17290V3.1" "Pp3c2_17370V3.1" "Pp3c2_17380V3.1"
[883] "Pp3c2_17390V3.1" "Pp3c2_17450V3.1" "Pp3c2_17510V3.1" "Pp3c2_17540V3.1" "Pp3c2_17560V3.1" "Pp3c2_17640V3.1" "Pp3c2_17670V3.1"
[890] "Pp3c2_17710V3.1" "Pp3c2_17900V3.1" "Pp3c2_17910V3.1" "Pp3c2_18020V3.1" "Pp3c2_18110V3.1" "Pp3c2_18130V3.1" "Pp3c2_18140V3.1"
[897] "Pp3c2_18330V3.1" "Pp3c2_18450V3.1" "Pp3c2_18480V3.1" "Pp3c2_18510V3.1" "Pp3c2_18520V3.1" "Pp3c2_18540V3.1" "Pp3c2_18600V3.1"
[904] "Pp3c2_18620V3.1" "Pp3c2_18630V3.1" "Pp3c2_18840V3.1" "Pp3c2_18850V3.1" "Pp3c2_19150V3.1" "Pp3c2_19170V3.1" "Pp3c2_19250V3.1"
[911] "Pp3c2_19260V3.1" "Pp3c2_19310V3.1" "Pp3c2_19330V3.1" "Pp3c2_19380V3.1" "Pp3c2_19400V3.1" "Pp3c2_19430V3.1" "Pp3c2_19520V3.1"
[918] "Pp3c2_19550V3.1" "Pp3c2_19610V3.1" "Pp3c2_19640V3.1" "Pp3c2_19690V3.1" "Pp3c2_19700V3.1" "Pp3c2_19730V3.1" "Pp3c2_19940V3.1"
[925] "Pp3c2_19950V3.1" "Pp3c2_19980V3.1" "Pp3c2_20030V3.1" "Pp3c2_20120V3.1" "Pp3c2_20130V3.1" "Pp3c2_20141V3.1" "Pp3c2_20240V3.1"
[932] "Pp3c2_20320V3.1" "Pp3c2_20330V3.1" "Pp3c2_20450V3.1" "Pp3c2_20500V3.1" "Pp3c2_20550V3.1" "Pp3c2_20630V3.1" "Pp3c2_20660V3.1"
[939] "Pp3c2_20840V3.1" "Pp3c2_20850V3.1" "Pp3c2_20860V3.1" "Pp3c2_20930V3.1" "Pp3c2_21100V3.1" "Pp3c2_21110V3.1" "Pp3c2_21260V3.1"
[946] "Pp3c2_21270V3.1" "Pp3c2_21290V3.1" "Pp3c2_21310V3.1" "Pp3c2_21370V3.1" "Pp3c2_21470V3.1" "Pp3c2_21590V3.1" "Pp3c2_21600V3.1"
[953] "Pp3c2_21660V3.1" "Pp3c2_21670V3.1" "Pp3c2_21710V3.1" "Pp3c2_21970V3.1" "Pp3c2_22000V3.1" "Pp3c2_22020V3.1" "Pp3c2_22120V3.1"
[960] "Pp3c2_22140V3.1" "Pp3c2_22190V3.1" "Pp3c2_22310V3.1" "Pp3c2_22540V3.1" "Pp3c2_22570V3.1" "Pp3c2_22630V3.1" "Pp3c2_23100V3.1"
[967] "Pp3c2_23140V3.1" "Pp3c2_23200V3.1" "Pp3c2_23290V3.1" "Pp3c2_23300V3.1" "Pp3c2_23320V3.1" "Pp3c2_23690V3.1" "Pp3c2_23750V3.1"
[974] "Pp3c2_23870V3.1" "Pp3c2_23900V3.1" "Pp3c2_23960V3.1" "Pp3c2_24100V3.1" "Pp3c2_24110V3.1" "Pp3c2_24130V3.1" "Pp3c2_24150V3.1"
[981] "Pp3c2_24160V3.1" "Pp3c2_24230V3.1" "Pp3c2_24270V3.1" "Pp3c2_24620V3.1" "Pp3c2_24640V3.1" "Pp3c2_24670V3.1" "Pp3c2_24723V3.1"
[988] "Pp3c2_24761V3.1" "Pp3c2_24840V3.1" "Pp3c2_24870V3.1" "Pp3c2_24880V3.1" "Pp3c2_24910V3.1" "Pp3c2_25000V3.1" "Pp3c2_25160V3.1"
[995] "Pp3c2_25170V3.1" "Pp3c2_25440V3.1" "Pp3c2_25580V3.1" "Pp3c2_25620V3.1" "Pp3c2_25690V3.1" "Pp3c2_25720V3.1"
[ reached getOption("max.print") -- omitted 8089 entries ]
[1] "DEGs intersection with direction check"
[1] 9089
[1] "Pp3c1_40V3.1" "Pp3c1_70V3.1" "Pp3c1_190V3.1" "Pp3c1_200V3.1" "Pp3c1_370V3.1" "Pp3c1_400V3.1" "Pp3c1_430V3.1"
[8] "Pp3c1_470V3.1" "Pp3c1_540V3.1" "Pp3c1_580V3.1" "Pp3c1_620V3.1" "Pp3c1_680V3.1" "Pp3c1_690V3.1" "Pp3c1_890V3.1"
[15] "Pp3c1_900V3.1" "Pp3c1_950V3.1" "Pp3c1_1000V3.1" "Pp3c1_1160V3.1" "Pp3c1_1240V3.1" "Pp3c1_1260V3.1" "Pp3c1_1330V3.1"
[22] "Pp3c1_1360V3.1" "Pp3c1_1390V3.1" "Pp3c1_1570V3.1" "Pp3c1_1790V3.1" "Pp3c1_1800V3.1" "Pp3c1_1810V3.1" "Pp3c1_1860V3.1"
[29] "Pp3c1_1870V3.1" "Pp3c1_1940V3.1" "Pp3c1_2010V3.1" "Pp3c1_2170V3.1" "Pp3c1_2210V3.1" "Pp3c1_2220V3.1" "Pp3c1_2390V3.1"
[36] "Pp3c1_2420V3.1" "Pp3c1_2510V3.1" "Pp3c1_2540V3.1" "Pp3c1_2740V3.1" "Pp3c1_2770V3.1" "Pp3c1_2880V3.1" "Pp3c1_2920V3.1"
[43] "Pp3c1_2960V3.1" "Pp3c1_2980V3.1" "Pp3c1_3040V3.1" "Pp3c1_3140V3.1" "Pp3c1_3160V3.1" "Pp3c1_3180V3.1" "Pp3c1_3200V3.1"
[50] "Pp3c1_3210V3.1" "Pp3c1_3220V3.1" "Pp3c1_3260V3.1" "Pp3c1_3300V3.1" "Pp3c1_3500V3.1" "Pp3c1_3520V3.1" "Pp3c1_3590V3.1"
[57] "Pp3c1_3610V3.1" "Pp3c1_3700V3.1" "Pp3c1_3730V3.1" "Pp3c1_3750V3.1" "Pp3c1_3890V3.1" "Pp3c1_4010V3.1" "Pp3c1_4030V3.1"
[64] "Pp3c1_4050V3.1" "Pp3c1_4140V3.1" "Pp3c1_4180V3.1" "Pp3c1_4270V3.1" "Pp3c1_4350V3.1" "Pp3c1_4400V3.1" "Pp3c1_4470V3.1"
[71] "Pp3c1_4510V3.1" "Pp3c1_4600V3.1" "Pp3c1_4750V3.1" "Pp3c1_4990V3.1" "Pp3c1_5050V3.1" "Pp3c1_5280V3.1" "Pp3c1_5300V3.1"
[78] "Pp3c1_5320V3.1" "Pp3c1_5460V3.1" "Pp3c1_5570V3.1" "Pp3c1_5800V3.1" "Pp3c1_5820V3.1" "Pp3c1_5850V3.1" "Pp3c1_5870V3.1"
[85] "Pp3c1_6020V3.1" "Pp3c1_6050V3.1" "Pp3c1_6090V3.1" "Pp3c1_6110V3.1" "Pp3c1_6120V3.1" "Pp3c1_6130V3.1" "Pp3c1_6272V3.1"
[92] "Pp3c1_6280V3.1" "Pp3c1_6360V3.1" "Pp3c1_6450V3.1" "Pp3c1_6470V3.1" "Pp3c1_6480V3.1" "Pp3c1_6500V3.1" "Pp3c1_6570V3.1"
[99] "Pp3c1_6640V3.1" "Pp3c1_6750V3.1" "Pp3c1_6930V3.1" "Pp3c1_6950V3.1" "Pp3c1_7010V3.1" "Pp3c1_7030V3.1" "Pp3c1_7090V3.1"
[106] "Pp3c1_7160V3.1" "Pp3c1_7170V3.1" "Pp3c1_7220V3.1" "Pp3c1_7300V3.1" "Pp3c1_7360V3.1" "Pp3c1_7370V3.1" "Pp3c1_7380V3.1"
[113] "Pp3c1_7390V3.1" "Pp3c1_7430V3.1" "Pp3c1_7450V3.1" "Pp3c1_7500V3.1" "Pp3c1_7520V3.1" "Pp3c1_7540V3.1" "Pp3c1_7590V3.1"
[120] "Pp3c1_7710V3.1" "Pp3c1_7720V3.1" "Pp3c1_7800V3.1" "Pp3c1_7810V3.1" "Pp3c1_7830V3.1" "Pp3c1_7880V3.1" "Pp3c1_7950V3.1"
[127] "Pp3c1_8060V3.1" "Pp3c1_8080V3.1" "Pp3c1_8110V3.1" "Pp3c1_8170V3.1" "Pp3c1_8190V3.1" "Pp3c1_8210V3.1" "Pp3c1_8280V3.1"
[134] "Pp3c1_8290V3.1" "Pp3c1_8400V3.1" "Pp3c1_8450V3.1" "Pp3c1_8530V3.1" "Pp3c1_8550V3.1" "Pp3c1_8870V3.1" "Pp3c1_8890V3.1"
[141] "Pp3c1_9180V3.1" "Pp3c1_9250V3.1" "Pp3c1_9290V3.1" "Pp3c1_9320V3.1" "Pp3c1_9560V3.1" "Pp3c1_9600V3.1" "Pp3c1_9630V3.1"
[148] "Pp3c1_9790V3.1" "Pp3c1_9860V3.1" "Pp3c1_9896V3.1" "Pp3c1_9970V3.1" "Pp3c1_10010V3.1" "Pp3c1_10040V3.1" "Pp3c1_10080V3.1"
[155] "Pp3c1_10090V3.1" "Pp3c1_10100V3.1" "Pp3c1_10200V3.1" "Pp3c1_10220V3.1" "Pp3c1_10400V3.1" "Pp3c1_10470V3.1" "Pp3c1_10530V3.1"
[162] "Pp3c1_10540V3.1" "Pp3c1_10570V3.1" "Pp3c1_10620V3.1" "Pp3c1_10630V3.1" "Pp3c1_10760V3.1" "Pp3c1_10810V3.1" "Pp3c1_10830V3.1"
[169] "Pp3c1_10880V3.1" "Pp3c1_10970V3.1" "Pp3c1_11030V3.1" "Pp3c1_11050V3.1" "Pp3c1_11090V3.1" "Pp3c1_11190V3.1" "Pp3c1_11420V3.1"
[176] "Pp3c1_11980V3.1" "Pp3c1_12020V3.1" "Pp3c1_12100V3.1" "Pp3c1_12120V3.1" "Pp3c1_12140V3.1" "Pp3c1_12470V3.1" "Pp3c1_12560V3.1"
[183] "Pp3c1_12610V3.1" "Pp3c1_12630V3.1" "Pp3c1_12730V3.1" "Pp3c1_12790V3.1" "Pp3c1_12810V3.1" "Pp3c1_12850V3.1" "Pp3c1_12860V3.1"
[190] "Pp3c1_12940V3.1" "Pp3c1_13120V3.1" "Pp3c1_13170V3.1" "Pp3c1_13308V3.1" "Pp3c1_13430V3.1" "Pp3c1_13570V3.1" "Pp3c1_13640V3.1"
[197] "Pp3c1_13670V3.1" "Pp3c1_13671V3.1" "Pp3c1_13800V3.1" "Pp3c1_13830V3.1" "Pp3c1_13910V3.1" "Pp3c1_14230V3.1" "Pp3c1_14330V3.1"
[204] "Pp3c1_14380V3.1" "Pp3c1_14540V3.1" "Pp3c1_14670V3.1" "Pp3c1_14740V3.1" "Pp3c1_14760V3.1" "Pp3c1_14770V3.1" "Pp3c1_14800V3.1"
[211] "Pp3c1_14870V3.1" "Pp3c1_14880V3.1" "Pp3c1_14910V3.1" "Pp3c1_14920V3.1" "Pp3c1_14980V3.1" "Pp3c1_15010V3.1" "Pp3c1_15090V3.1"
[218] "Pp3c1_15100V3.1" "Pp3c1_15110V3.1" "Pp3c1_15130V3.1" "Pp3c1_15150V3.1" "Pp3c1_15160V3.1" "Pp3c1_15210V3.1" "Pp3c1_15400V3.1"
[225] "Pp3c1_15410V3.1" "Pp3c1_15440V3.1" "Pp3c1_15460V3.1" "Pp3c1_15560V3.1" "Pp3c1_15690V3.1" "Pp3c1_15730V3.1" "Pp3c1_15750V3.1"
[232] "Pp3c1_15940V3.1" "Pp3c1_16170V3.1" "Pp3c1_16250V3.1" "Pp3c1_16500V3.1" "Pp3c1_16600V3.1" "Pp3c1_16780V3.1" "Pp3c1_16840V3.1"
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[764] "Pp3c2_10220V3.1" "Pp3c2_10260V3.1" "Pp3c2_10280V3.1" "Pp3c2_10310V3.1" "Pp3c2_10350V3.1" "Pp3c2_10530V3.1" "Pp3c2_10610V3.1"
[771] "Pp3c2_10630V3.1" "Pp3c2_10900V3.1" "Pp3c2_11030V3.1" "Pp3c2_11130V3.1" "Pp3c2_11190V3.1" "Pp3c2_11210V3.1" "Pp3c2_11250V3.1"
[778] "Pp3c2_11310V3.1" "Pp3c2_11370V3.1" "Pp3c2_11380V3.1" "Pp3c2_11410V3.1" "Pp3c2_11490V3.1" "Pp3c2_11540V3.1" "Pp3c2_11670V3.1"
[785] "Pp3c2_11730V3.1" "Pp3c2_11820V3.1" "Pp3c2_11850V3.1" "Pp3c2_11870V3.1" "Pp3c2_11890V3.1" "Pp3c2_12080V3.1" "Pp3c2_12120V3.1"
[792] "Pp3c2_12150V3.1" "Pp3c2_12240V3.1" "Pp3c2_12290V3.1" "Pp3c2_12320V3.1" "Pp3c2_12550V3.1" "Pp3c2_12620V3.1" "Pp3c2_12670V3.1"
[799] "Pp3c2_12680V3.1" "Pp3c2_12740V3.1" "Pp3c2_13250V3.1" "Pp3c2_13270V3.1" "Pp3c2_13280V3.1" "Pp3c2_13290V3.1" "Pp3c2_13300V3.1"
[806] "Pp3c2_13330V3.1" "Pp3c2_13370V3.1" "Pp3c2_13400V3.1" "Pp3c2_13410V3.1" "Pp3c2_13420V3.1" "Pp3c2_13560V3.1" "Pp3c2_13590V3.1"
[813] "Pp3c2_13670V3.1" "Pp3c2_13690V3.1" "Pp3c2_13790V3.1" "Pp3c2_13820V3.1" "Pp3c2_13870V3.1" "Pp3c2_13880V3.1" "Pp3c2_13930V3.1"
[820] "Pp3c2_13970V3.1" "Pp3c2_14050V3.1" "Pp3c2_14060V3.1" "Pp3c2_14090V3.1" "Pp3c2_14120V3.1" "Pp3c2_14160V3.1" "Pp3c2_14270V3.1"
[827] "Pp3c2_14290V3.1" "Pp3c2_14300V3.1" "Pp3c2_14350V3.1" "Pp3c2_14400V3.1" "Pp3c2_14410V3.1" "Pp3c2_14470V3.1" "Pp3c2_14510V3.1"
[834] "Pp3c2_14520V3.1" "Pp3c2_14560V3.1" "Pp3c2_14570V3.1" "Pp3c2_14600V3.1" "Pp3c2_14610V3.1" "Pp3c2_14800V3.1" "Pp3c2_14820V3.1"
[841] "Pp3c2_14930V3.1" "Pp3c2_15020V3.1" "Pp3c2_15060V3.1" "Pp3c2_15140V3.1" "Pp3c2_15180V3.1" "Pp3c2_15200V3.1" "Pp3c2_15250V3.1"
[848] "Pp3c2_15400V3.1" "Pp3c2_15430V3.1" "Pp3c2_15470V3.1" "Pp3c2_15480V3.1" "Pp3c2_15490V3.1" "Pp3c2_15500V3.1" "Pp3c2_15510V3.1"
[855] "Pp3c2_15820V3.1" "Pp3c2_15860V3.1" "Pp3c2_15900V3.1" "Pp3c2_15950V3.1" "Pp3c2_16030V3.1" "Pp3c2_16160V3.1" "Pp3c2_16250V3.1"
[862] "Pp3c2_16300V3.1" "Pp3c2_16310V3.1" "Pp3c2_16330V3.1" "Pp3c2_16610V3.1" "Pp3c2_16660V3.1" "Pp3c2_16671V3.1" "Pp3c2_16680V3.1"
[869] "Pp3c2_16720V3.1" "Pp3c2_16770V3.1" "Pp3c2_16830V3.1" "Pp3c2_16950V3.1" "Pp3c2_17000V3.1" "Pp3c2_17040V3.1" "Pp3c2_17070V3.1"
[876] "Pp3c2_17110V3.1" "Pp3c2_17140V3.1" "Pp3c2_17160V3.1" "Pp3c2_17270V3.1" "Pp3c2_17290V3.1" "Pp3c2_17370V3.1" "Pp3c2_17380V3.1"
[883] "Pp3c2_17390V3.1" "Pp3c2_17450V3.1" "Pp3c2_17510V3.1" "Pp3c2_17540V3.1" "Pp3c2_17560V3.1" "Pp3c2_17640V3.1" "Pp3c2_17670V3.1"
[890] "Pp3c2_17710V3.1" "Pp3c2_17900V3.1" "Pp3c2_17910V3.1" "Pp3c2_18020V3.1" "Pp3c2_18110V3.1" "Pp3c2_18130V3.1" "Pp3c2_18140V3.1"
[897] "Pp3c2_18330V3.1" "Pp3c2_18450V3.1" "Pp3c2_18480V3.1" "Pp3c2_18510V3.1" "Pp3c2_18520V3.1" "Pp3c2_18540V3.1" "Pp3c2_18600V3.1"
[904] "Pp3c2_18620V3.1" "Pp3c2_18630V3.1" "Pp3c2_18840V3.1" "Pp3c2_18850V3.1" "Pp3c2_19150V3.1" "Pp3c2_19170V3.1" "Pp3c2_19250V3.1"
[911] "Pp3c2_19260V3.1" "Pp3c2_19310V3.1" "Pp3c2_19330V3.1" "Pp3c2_19380V3.1" "Pp3c2_19400V3.1" "Pp3c2_19430V3.1" "Pp3c2_19520V3.1"
[918] "Pp3c2_19550V3.1" "Pp3c2_19610V3.1" "Pp3c2_19640V3.1" "Pp3c2_19690V3.1" "Pp3c2_19700V3.1" "Pp3c2_19730V3.1" "Pp3c2_19940V3.1"
[925] "Pp3c2_19950V3.1" "Pp3c2_19980V3.1" "Pp3c2_20030V3.1" "Pp3c2_20120V3.1" "Pp3c2_20130V3.1" "Pp3c2_20141V3.1" "Pp3c2_20240V3.1"
[932] "Pp3c2_20320V3.1" "Pp3c2_20330V3.1" "Pp3c2_20450V3.1" "Pp3c2_20500V3.1" "Pp3c2_20550V3.1" "Pp3c2_20630V3.1" "Pp3c2_20660V3.1"
[939] "Pp3c2_20840V3.1" "Pp3c2_20850V3.1" "Pp3c2_20860V3.1" "Pp3c2_20930V3.1" "Pp3c2_21100V3.1" "Pp3c2_21110V3.1" "Pp3c2_21260V3.1"
[946] "Pp3c2_21270V3.1" "Pp3c2_21290V3.1" "Pp3c2_21310V3.1" "Pp3c2_21370V3.1" "Pp3c2_21470V3.1" "Pp3c2_21590V3.1" "Pp3c2_21600V3.1"
[953] "Pp3c2_21660V3.1" "Pp3c2_21670V3.1" "Pp3c2_21710V3.1" "Pp3c2_21970V3.1" "Pp3c2_22000V3.1" "Pp3c2_22020V3.1" "Pp3c2_22120V3.1"
[960] "Pp3c2_22140V3.1" "Pp3c2_22190V3.1" "Pp3c2_22310V3.1" "Pp3c2_22540V3.1" "Pp3c2_22570V3.1" "Pp3c2_22630V3.1" "Pp3c2_23100V3.1"
[967] "Pp3c2_23140V3.1" "Pp3c2_23200V3.1" "Pp3c2_23290V3.1" "Pp3c2_23300V3.1" "Pp3c2_23320V3.1" "Pp3c2_23690V3.1" "Pp3c2_23750V3.1"
[974] "Pp3c2_23870V3.1" "Pp3c2_23900V3.1" "Pp3c2_23960V3.1" "Pp3c2_24100V3.1" "Pp3c2_24110V3.1" "Pp3c2_24130V3.1" "Pp3c2_24150V3.1"
[981] "Pp3c2_24160V3.1" "Pp3c2_24230V3.1" "Pp3c2_24270V3.1" "Pp3c2_24620V3.1" "Pp3c2_24640V3.1" "Pp3c2_24670V3.1" "Pp3c2_24723V3.1"
[988] "Pp3c2_24761V3.1" "Pp3c2_24840V3.1" "Pp3c2_24870V3.1" "Pp3c2_24880V3.1" "Pp3c2_24910V3.1" "Pp3c2_25000V3.1" "Pp3c2_25160V3.1"
[995] "Pp3c2_25170V3.1" "Pp3c2_25440V3.1" "Pp3c2_25580V3.1" "Pp3c2_25620V3.1" "Pp3c2_25690V3.1" "Pp3c2_25720V3.1"
[ reached getOption("max.print") -- omitted 8089 entries ]
[1] "DEGs edgeR"
[1] 14938
[1] "DEGs deseq2"
[1] 13221
[1] "DEGs noiseq"
[1] 9419
[1] "DEGs noiseqbio"
[1] 10749
[1] "DEGs intersection without direction check (three methods)"
[1] 9360
[1] "Pp3c1_40V3.1" "Pp3c1_70V3.1" "Pp3c1_190V3.1" "Pp3c1_200V3.1" "Pp3c1_370V3.1" "Pp3c1_400V3.1" "Pp3c1_430V3.1"
[8] "Pp3c1_470V3.1" "Pp3c1_540V3.1" "Pp3c1_580V3.1" "Pp3c1_620V3.1" "Pp3c1_680V3.1" "Pp3c1_690V3.1" "Pp3c1_890V3.1"
[15] "Pp3c1_900V3.1" "Pp3c1_950V3.1" "Pp3c1_1000V3.1" "Pp3c1_1160V3.1" "Pp3c1_1240V3.1" "Pp3c1_1260V3.1" "Pp3c1_1330V3.1"
[22] "Pp3c1_1360V3.1" "Pp3c1_1390V3.1" "Pp3c1_1570V3.1" "Pp3c1_1790V3.1" "Pp3c1_1800V3.1" "Pp3c1_1810V3.1" "Pp3c1_1860V3.1"
[29] "Pp3c1_1870V3.1" "Pp3c1_1940V3.1" "Pp3c1_2010V3.1" "Pp3c1_2170V3.1" "Pp3c1_2210V3.1" "Pp3c1_2220V3.1" "Pp3c1_2390V3.1"
[36] "Pp3c1_2420V3.1" "Pp3c1_2510V3.1" "Pp3c1_2540V3.1" "Pp3c1_2740V3.1" "Pp3c1_2770V3.1" "Pp3c1_2880V3.1" "Pp3c1_2920V3.1"
[43] "Pp3c1_2960V3.1" "Pp3c1_2980V3.1" "Pp3c1_3040V3.1" "Pp3c1_3140V3.1" "Pp3c1_3160V3.1" "Pp3c1_3180V3.1" "Pp3c1_3200V3.1"
[50] "Pp3c1_3210V3.1" "Pp3c1_3220V3.1" "Pp3c1_3260V3.1" "Pp3c1_3300V3.1" "Pp3c1_3500V3.1" "Pp3c1_3520V3.1" "Pp3c1_3590V3.1"
[57] "Pp3c1_3610V3.1" "Pp3c1_3700V3.1" "Pp3c1_3730V3.1" "Pp3c1_3750V3.1" "Pp3c1_3890V3.1" "Pp3c1_4010V3.1" "Pp3c1_4030V3.1"
[64] "Pp3c1_4050V3.1" "Pp3c1_4140V3.1" "Pp3c1_4180V3.1" "Pp3c1_4270V3.1" "Pp3c1_4350V3.1" "Pp3c1_4400V3.1" "Pp3c1_4470V3.1"
[71] "Pp3c1_4510V3.1" "Pp3c1_4600V3.1" "Pp3c1_4750V3.1" "Pp3c1_4990V3.1" "Pp3c1_5050V3.1" "Pp3c1_5280V3.1" "Pp3c1_5300V3.1"
[78] "Pp3c1_5320V3.1" "Pp3c1_5460V3.1" "Pp3c1_5570V3.1" "Pp3c1_5800V3.1" "Pp3c1_5820V3.1" "Pp3c1_5850V3.1" "Pp3c1_5860V3.1"
[85] "Pp3c1_5870V3.1" "Pp3c1_5970V3.1" "Pp3c1_6020V3.1" "Pp3c1_6050V3.1" "Pp3c1_6090V3.1" "Pp3c1_6110V3.1" "Pp3c1_6120V3.1"
[92] "Pp3c1_6130V3.1" "Pp3c1_6272V3.1" "Pp3c1_6280V3.1" "Pp3c1_6360V3.1" "Pp3c1_6380V3.1" "Pp3c1_6450V3.1" "Pp3c1_6470V3.1"
[99] "Pp3c1_6480V3.1" "Pp3c1_6500V3.1" "Pp3c1_6570V3.1" "Pp3c1_6640V3.1" "Pp3c1_6750V3.1" "Pp3c1_6930V3.1" "Pp3c1_6950V3.1"
[106] "Pp3c1_7010V3.1" "Pp3c1_7030V3.1" "Pp3c1_7090V3.1" "Pp3c1_7160V3.1" "Pp3c1_7170V3.1" "Pp3c1_7220V3.1" "Pp3c1_7300V3.1"
[113] "Pp3c1_7360V3.1" "Pp3c1_7370V3.1" "Pp3c1_7380V3.1" "Pp3c1_7390V3.1" "Pp3c1_7430V3.1" "Pp3c1_7450V3.1" "Pp3c1_7500V3.1"
[120] "Pp3c1_7520V3.1" "Pp3c1_7540V3.1" "Pp3c1_7590V3.1" "Pp3c1_7710V3.1" "Pp3c1_7720V3.1" "Pp3c1_7800V3.1" "Pp3c1_7810V3.1"
[127] "Pp3c1_7830V3.1" "Pp3c1_7880V3.1" "Pp3c1_7950V3.1" "Pp3c1_8060V3.1" "Pp3c1_8080V3.1" "Pp3c1_8110V3.1" "Pp3c1_8170V3.1"
[134] "Pp3c1_8190V3.1" "Pp3c1_8210V3.1" "Pp3c1_8280V3.1" "Pp3c1_8290V3.1" "Pp3c1_8400V3.1" "Pp3c1_8440V3.1" "Pp3c1_8450V3.1"
[141] "Pp3c1_8530V3.1" "Pp3c1_8550V3.1" "Pp3c1_8870V3.1" "Pp3c1_8890V3.1" "Pp3c1_9180V3.1" "Pp3c1_9250V3.1" "Pp3c1_9290V3.1"
[148] "Pp3c1_9320V3.1" "Pp3c1_9560V3.1" "Pp3c1_9600V3.1" "Pp3c1_9630V3.1" "Pp3c1_9790V3.1" "Pp3c1_9860V3.1" "Pp3c1_9896V3.1"
[155] "Pp3c1_9970V3.1" "Pp3c1_10010V3.1" "Pp3c1_10040V3.1" "Pp3c1_10080V3.1" "Pp3c1_10090V3.1" "Pp3c1_10100V3.1" "Pp3c1_10200V3.1"
[162] "Pp3c1_10220V3.1" "Pp3c1_10400V3.1" "Pp3c1_10470V3.1" "Pp3c1_10530V3.1" "Pp3c1_10540V3.1" "Pp3c1_10570V3.1" "Pp3c1_10620V3.1"
[169] "Pp3c1_10630V3.1" "Pp3c1_10760V3.1" "Pp3c1_10810V3.1" "Pp3c1_10830V3.1" "Pp3c1_10880V3.1" "Pp3c1_10970V3.1" "Pp3c1_11030V3.1"
[176] "Pp3c1_11050V3.1" "Pp3c1_11090V3.1" "Pp3c1_11190V3.1" "Pp3c1_11420V3.1" "Pp3c1_11980V3.1" "Pp3c1_12020V3.1" "Pp3c1_12100V3.1"
[183] "Pp3c1_12120V3.1" "Pp3c1_12140V3.1" "Pp3c1_12470V3.1" "Pp3c1_12560V3.1" "Pp3c1_12610V3.1" "Pp3c1_12630V3.1" "Pp3c1_12730V3.1"
[190] "Pp3c1_12790V3.1" "Pp3c1_12810V3.1" "Pp3c1_12850V3.1" "Pp3c1_12860V3.1" "Pp3c1_12940V3.1" "Pp3c1_13120V3.1" "Pp3c1_13170V3.1"
[197] "Pp3c1_13308V3.1" "Pp3c1_13430V3.1" "Pp3c1_13570V3.1" "Pp3c1_13640V3.1" "Pp3c1_13670V3.1" "Pp3c1_13671V3.1" "Pp3c1_13800V3.1"
[204] "Pp3c1_13830V3.1" "Pp3c1_13910V3.1" "Pp3c1_14230V3.1" "Pp3c1_14330V3.1" "Pp3c1_14380V3.1" "Pp3c1_14540V3.1" "Pp3c1_14670V3.1"
[211] "Pp3c1_14740V3.1" "Pp3c1_14760V3.1" "Pp3c1_14770V3.1" "Pp3c1_14800V3.1" "Pp3c1_14870V3.1" "Pp3c1_14880V3.1" "Pp3c1_14910V3.1"
[218] "Pp3c1_14920V3.1" "Pp3c1_14980V3.1" "Pp3c1_15010V3.1" "Pp3c1_15090V3.1" "Pp3c1_15100V3.1" "Pp3c1_15110V3.1" "Pp3c1_15130V3.1"
[225] "Pp3c1_15150V3.1" "Pp3c1_15160V3.1" "Pp3c1_15210V3.1" "Pp3c1_15400V3.1" "Pp3c1_15410V3.1" "Pp3c1_15440V3.1" "Pp3c1_15460V3.1"
[232] "Pp3c1_15560V3.1" "Pp3c1_15690V3.1" "Pp3c1_15730V3.1" "Pp3c1_15750V3.1" "Pp3c1_15940V3.1" "Pp3c1_16170V3.1" "Pp3c1_16250V3.1"
[239] "Pp3c1_16500V3.1" "Pp3c1_16600V3.1" "Pp3c1_16780V3.1" "Pp3c1_16840V3.1" "Pp3c1_16850V3.1" "Pp3c1_16900V3.1" "Pp3c1_16980V3.1"
[246] "Pp3c1_17080V3.1" "Pp3c1_17220V3.1" "Pp3c1_17370V3.1" "Pp3c1_17860V3.1" "Pp3c1_17870V3.1" "Pp3c1_18130V3.1" "Pp3c1_18150V3.1"
[253] "Pp3c1_18250V3.1" "Pp3c1_18260V3.1" "Pp3c1_18280V3.1" "Pp3c1_18420V3.1" "Pp3c1_18440V3.1" "Pp3c1_18460V3.1" "Pp3c1_18530V3.1"
[260] "Pp3c1_18830V3.1" "Pp3c1_18860V3.1" "Pp3c1_18910V3.1" "Pp3c1_18940V3.1" "Pp3c1_19060V3.1" "Pp3c1_19176V3.1" "Pp3c1_19200V3.1"
[267] "Pp3c1_19210V3.1" "Pp3c1_19230V3.1" "Pp3c1_19240V3.1" "Pp3c1_19310V3.1" "Pp3c1_19370V3.1" "Pp3c1_19400V3.1" "Pp3c1_19660V3.1"
[274] "Pp3c1_19950V3.1" "Pp3c1_20010V3.1" "Pp3c1_20040V3.1" "Pp3c1_20050V3.1" "Pp3c1_20230V3.1" "Pp3c1_20280V3.1" "Pp3c1_20310V3.1"
[281] "Pp3c1_20350V3.1" "Pp3c1_20430V3.1" "Pp3c1_20640V3.1" "Pp3c1_20690V3.1" "Pp3c1_20700V3.1" "Pp3c1_20710V3.1" "Pp3c1_20753V3.1"
[288] "Pp3c1_20770V3.1" "Pp3c1_20790V3.1" "Pp3c1_20810V3.1" "Pp3c1_20870V3.1" "Pp3c1_20880V3.1" "Pp3c1_20960V3.1" "Pp3c1_20980V3.1"
[295] "Pp3c1_21050V3.1" "Pp3c1_21110V3.1" "Pp3c1_21160V3.1" "Pp3c1_21200V3.1" "Pp3c1_21230V3.1" "Pp3c1_21270V3.1" "Pp3c1_21290V3.1"
[302] "Pp3c1_21360V3.1" "Pp3c1_21400V3.1" "Pp3c1_21480V3.1" "Pp3c1_21510V3.1" "Pp3c1_21540V3.1" "Pp3c1_21550V3.1" "Pp3c1_21620V3.1"
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[834] "Pp3c2_13670V3.1" "Pp3c2_13690V3.1" "Pp3c2_13790V3.1" "Pp3c2_13820V3.1" "Pp3c2_13870V3.1" "Pp3c2_13880V3.1" "Pp3c2_13930V3.1"
[841] "Pp3c2_13970V3.1" "Pp3c2_14050V3.1" "Pp3c2_14060V3.1" "Pp3c2_14090V3.1" "Pp3c2_14120V3.1" "Pp3c2_14160V3.1" "Pp3c2_14270V3.1"
[848] "Pp3c2_14290V3.1" "Pp3c2_14300V3.1" "Pp3c2_14350V3.1" "Pp3c2_14400V3.1" "Pp3c2_14410V3.1" "Pp3c2_14470V3.1" "Pp3c2_14510V3.1"
[855] "Pp3c2_14520V3.1" "Pp3c2_14560V3.1" "Pp3c2_14570V3.1" "Pp3c2_14600V3.1" "Pp3c2_14610V3.1" "Pp3c2_14800V3.1" "Pp3c2_14820V3.1"
[862] "Pp3c2_14930V3.1" "Pp3c2_15020V3.1" "Pp3c2_15060V3.1" "Pp3c2_15140V3.1" "Pp3c2_15180V3.1" "Pp3c2_15200V3.1" "Pp3c2_15250V3.1"
[869] "Pp3c2_15400V3.1" "Pp3c2_15430V3.1" "Pp3c2_15470V3.1" "Pp3c2_15480V3.1" "Pp3c2_15490V3.1" "Pp3c2_15500V3.1" "Pp3c2_15510V3.1"
[876] "Pp3c2_15820V3.1" "Pp3c2_15860V3.1" "Pp3c2_15900V3.1" "Pp3c2_15950V3.1" "Pp3c2_16030V3.1" "Pp3c2_16160V3.1" "Pp3c2_16250V3.1"
[883] "Pp3c2_16300V3.1" "Pp3c2_16310V3.1" "Pp3c2_16330V3.1" "Pp3c2_16610V3.1" "Pp3c2_16660V3.1" "Pp3c2_16671V3.1" "Pp3c2_16680V3.1"
[890] "Pp3c2_16720V3.1" "Pp3c2_16770V3.1" "Pp3c2_16830V3.1" "Pp3c2_16950V3.1" "Pp3c2_17000V3.1" "Pp3c2_17040V3.1" "Pp3c2_17070V3.1"
[897] "Pp3c2_17110V3.1" "Pp3c2_17140V3.1" "Pp3c2_17160V3.1" "Pp3c2_17270V3.1" "Pp3c2_17290V3.1" "Pp3c2_17370V3.1" "Pp3c2_17380V3.1"
[904] "Pp3c2_17390V3.1" "Pp3c2_17450V3.1" "Pp3c2_17510V3.1" "Pp3c2_17540V3.1" "Pp3c2_17560V3.1" "Pp3c2_17640V3.1" "Pp3c2_17670V3.1"
[911] "Pp3c2_17710V3.1" "Pp3c2_17900V3.1" "Pp3c2_17910V3.1" "Pp3c2_18020V3.1" "Pp3c2_18110V3.1" "Pp3c2_18130V3.1" "Pp3c2_18140V3.1"
[918] "Pp3c2_18330V3.1" "Pp3c2_18450V3.1" "Pp3c2_18480V3.1" "Pp3c2_18510V3.1" "Pp3c2_18520V3.1" "Pp3c2_18540V3.1" "Pp3c2_18600V3.1"
[925] "Pp3c2_18610V3.1" "Pp3c2_18620V3.1" "Pp3c2_18630V3.1" "Pp3c2_18840V3.1" "Pp3c2_18850V3.1" "Pp3c2_19150V3.1" "Pp3c2_19170V3.1"
[932] "Pp3c2_19250V3.1" "Pp3c2_19260V3.1" "Pp3c2_19280V3.1" "Pp3c2_19310V3.1" "Pp3c2_19330V3.1" "Pp3c2_19380V3.1" "Pp3c2_19400V3.1"
[939] "Pp3c2_19430V3.1" "Pp3c2_19520V3.1" "Pp3c2_19550V3.1" "Pp3c2_19600V3.1" "Pp3c2_19610V3.1" "Pp3c2_19640V3.1" "Pp3c2_19660V3.1"
[946] "Pp3c2_19690V3.1" "Pp3c2_19700V3.1" "Pp3c2_19730V3.1" "Pp3c2_19940V3.1" "Pp3c2_19950V3.1" "Pp3c2_19980V3.1" "Pp3c2_20030V3.1"
[953] "Pp3c2_20120V3.1" "Pp3c2_20130V3.1" "Pp3c2_20141V3.1" "Pp3c2_20240V3.1" "Pp3c2_20320V3.1" "Pp3c2_20330V3.1" "Pp3c2_20450V3.1"
[960] "Pp3c2_20500V3.1" "Pp3c2_20550V3.1" "Pp3c2_20630V3.1" "Pp3c2_20660V3.1" "Pp3c2_20840V3.1" "Pp3c2_20850V3.1" "Pp3c2_20860V3.1"
[967] "Pp3c2_20930V3.1" "Pp3c2_21100V3.1" "Pp3c2_21110V3.1" "Pp3c2_21260V3.1" "Pp3c2_21270V3.1" "Pp3c2_21290V3.1" "Pp3c2_21310V3.1"
[974] "Pp3c2_21370V3.1" "Pp3c2_21470V3.1" "Pp3c2_21540V3.1" "Pp3c2_21590V3.1" "Pp3c2_21600V3.1" "Pp3c2_21660V3.1" "Pp3c2_21670V3.1"
[981] "Pp3c2_21710V3.1" "Pp3c2_21860V3.1" "Pp3c2_21970V3.1" "Pp3c2_22000V3.1" "Pp3c2_22020V3.1" "Pp3c2_22120V3.1" "Pp3c2_22140V3.1"
[988] "Pp3c2_22190V3.1" "Pp3c2_22310V3.1" "Pp3c2_22540V3.1" "Pp3c2_22550V3.1" "Pp3c2_22570V3.1" "Pp3c2_22630V3.1" "Pp3c2_23100V3.1"
[995] "Pp3c2_23140V3.1" "Pp3c2_23200V3.1" "Pp3c2_23290V3.1" "Pp3c2_23300V3.1" "Pp3c2_23320V3.1" "Pp3c2_23690V3.1"
[ reached getOption("max.print") -- omitted 8360 entries ]
[1] "DEGs intersection with direction check"
[1] 9360
[1] "Pp3c1_40V3.1" "Pp3c1_70V3.1" "Pp3c1_190V3.1" "Pp3c1_200V3.1" "Pp3c1_370V3.1" "Pp3c1_400V3.1" "Pp3c1_430V3.1"
[8] "Pp3c1_470V3.1" "Pp3c1_540V3.1" "Pp3c1_580V3.1" "Pp3c1_620V3.1" "Pp3c1_680V3.1" "Pp3c1_690V3.1" "Pp3c1_890V3.1"
[15] "Pp3c1_900V3.1" "Pp3c1_950V3.1" "Pp3c1_1000V3.1" "Pp3c1_1160V3.1" "Pp3c1_1240V3.1" "Pp3c1_1260V3.1" "Pp3c1_1330V3.1"
[22] "Pp3c1_1360V3.1" "Pp3c1_1390V3.1" "Pp3c1_1570V3.1" "Pp3c1_1790V3.1" "Pp3c1_1800V3.1" "Pp3c1_1810V3.1" "Pp3c1_1860V3.1"
[29] "Pp3c1_1870V3.1" "Pp3c1_1940V3.1" "Pp3c1_2010V3.1" "Pp3c1_2170V3.1" "Pp3c1_2210V3.1" "Pp3c1_2220V3.1" "Pp3c1_2390V3.1"
[36] "Pp3c1_2420V3.1" "Pp3c1_2510V3.1" "Pp3c1_2540V3.1" "Pp3c1_2740V3.1" "Pp3c1_2770V3.1" "Pp3c1_2880V3.1" "Pp3c1_2920V3.1"
[43] "Pp3c1_2960V3.1" "Pp3c1_2980V3.1" "Pp3c1_3040V3.1" "Pp3c1_3140V3.1" "Pp3c1_3160V3.1" "Pp3c1_3180V3.1" "Pp3c1_3200V3.1"
[50] "Pp3c1_3210V3.1" "Pp3c1_3220V3.1" "Pp3c1_3260V3.1" "Pp3c1_3300V3.1" "Pp3c1_3500V3.1" "Pp3c1_3520V3.1" "Pp3c1_3590V3.1"
[57] "Pp3c1_3610V3.1" "Pp3c1_3700V3.1" "Pp3c1_3730V3.1" "Pp3c1_3750V3.1" "Pp3c1_3890V3.1" "Pp3c1_4010V3.1" "Pp3c1_4030V3.1"
[64] "Pp3c1_4050V3.1" "Pp3c1_4140V3.1" "Pp3c1_4180V3.1" "Pp3c1_4270V3.1" "Pp3c1_4350V3.1" "Pp3c1_4400V3.1" "Pp3c1_4470V3.1"
[71] "Pp3c1_4510V3.1" "Pp3c1_4600V3.1" "Pp3c1_4750V3.1" "Pp3c1_4990V3.1" "Pp3c1_5050V3.1" "Pp3c1_5280V3.1" "Pp3c1_5300V3.1"
[78] "Pp3c1_5320V3.1" "Pp3c1_5460V3.1" "Pp3c1_5570V3.1" "Pp3c1_5800V3.1" "Pp3c1_5820V3.1" "Pp3c1_5850V3.1" "Pp3c1_5860V3.1"
[85] "Pp3c1_5870V3.1" "Pp3c1_5970V3.1" "Pp3c1_6020V3.1" "Pp3c1_6050V3.1" "Pp3c1_6090V3.1" "Pp3c1_6110V3.1" "Pp3c1_6120V3.1"
[92] "Pp3c1_6130V3.1" "Pp3c1_6272V3.1" "Pp3c1_6280V3.1" "Pp3c1_6360V3.1" "Pp3c1_6380V3.1" "Pp3c1_6450V3.1" "Pp3c1_6470V3.1"
[99] "Pp3c1_6480V3.1" "Pp3c1_6500V3.1" "Pp3c1_6570V3.1" "Pp3c1_6640V3.1" "Pp3c1_6750V3.1" "Pp3c1_6930V3.1" "Pp3c1_6950V3.1"
[106] "Pp3c1_7010V3.1" "Pp3c1_7030V3.1" "Pp3c1_7090V3.1" "Pp3c1_7160V3.1" "Pp3c1_7170V3.1" "Pp3c1_7220V3.1" "Pp3c1_7300V3.1"
[113] "Pp3c1_7360V3.1" "Pp3c1_7370V3.1" "Pp3c1_7380V3.1" "Pp3c1_7390V3.1" "Pp3c1_7430V3.1" "Pp3c1_7450V3.1" "Pp3c1_7500V3.1"
[120] "Pp3c1_7520V3.1" "Pp3c1_7540V3.1" "Pp3c1_7590V3.1" "Pp3c1_7710V3.1" "Pp3c1_7720V3.1" "Pp3c1_7800V3.1" "Pp3c1_7810V3.1"
[127] "Pp3c1_7830V3.1" "Pp3c1_7880V3.1" "Pp3c1_7950V3.1" "Pp3c1_8060V3.1" "Pp3c1_8080V3.1" "Pp3c1_8110V3.1" "Pp3c1_8170V3.1"
[134] "Pp3c1_8190V3.1" "Pp3c1_8210V3.1" "Pp3c1_8280V3.1" "Pp3c1_8290V3.1" "Pp3c1_8400V3.1" "Pp3c1_8440V3.1" "Pp3c1_8450V3.1"
[141] "Pp3c1_8530V3.1" "Pp3c1_8550V3.1" "Pp3c1_8870V3.1" "Pp3c1_8890V3.1" "Pp3c1_9180V3.1" "Pp3c1_9250V3.1" "Pp3c1_9290V3.1"
[148] "Pp3c1_9320V3.1" "Pp3c1_9560V3.1" "Pp3c1_9600V3.1" "Pp3c1_9630V3.1" "Pp3c1_9790V3.1" "Pp3c1_9860V3.1" "Pp3c1_9896V3.1"
[155] "Pp3c1_9970V3.1" "Pp3c1_10010V3.1" "Pp3c1_10040V3.1" "Pp3c1_10080V3.1" "Pp3c1_10090V3.1" "Pp3c1_10100V3.1" "Pp3c1_10200V3.1"
[162] "Pp3c1_10220V3.1" "Pp3c1_10400V3.1" "Pp3c1_10470V3.1" "Pp3c1_10530V3.1" "Pp3c1_10540V3.1" "Pp3c1_10570V3.1" "Pp3c1_10620V3.1"
[169] "Pp3c1_10630V3.1" "Pp3c1_10760V3.1" "Pp3c1_10810V3.1" "Pp3c1_10830V3.1" "Pp3c1_10880V3.1" "Pp3c1_10970V3.1" "Pp3c1_11030V3.1"
[176] "Pp3c1_11050V3.1" "Pp3c1_11090V3.1" "Pp3c1_11190V3.1" "Pp3c1_11420V3.1" "Pp3c1_11980V3.1" "Pp3c1_12020V3.1" "Pp3c1_12100V3.1"
[183] "Pp3c1_12120V3.1" "Pp3c1_12140V3.1" "Pp3c1_12470V3.1" "Pp3c1_12560V3.1" "Pp3c1_12610V3.1" "Pp3c1_12630V3.1" "Pp3c1_12730V3.1"
[190] "Pp3c1_12790V3.1" "Pp3c1_12810V3.1" "Pp3c1_12850V3.1" "Pp3c1_12860V3.1" "Pp3c1_12940V3.1" "Pp3c1_13120V3.1" "Pp3c1_13170V3.1"
[197] "Pp3c1_13308V3.1" "Pp3c1_13430V3.1" "Pp3c1_13570V3.1" "Pp3c1_13640V3.1" "Pp3c1_13670V3.1" "Pp3c1_13671V3.1" "Pp3c1_13800V3.1"
[204] "Pp3c1_13830V3.1" "Pp3c1_13910V3.1" "Pp3c1_14230V3.1" "Pp3c1_14330V3.1" "Pp3c1_14380V3.1" "Pp3c1_14540V3.1" "Pp3c1_14670V3.1"
[211] "Pp3c1_14740V3.1" "Pp3c1_14760V3.1" "Pp3c1_14770V3.1" "Pp3c1_14800V3.1" "Pp3c1_14870V3.1" "Pp3c1_14880V3.1" "Pp3c1_14910V3.1"
[218] "Pp3c1_14920V3.1" "Pp3c1_14980V3.1" "Pp3c1_15010V3.1" "Pp3c1_15090V3.1" "Pp3c1_15100V3.1" "Pp3c1_15110V3.1" "Pp3c1_15130V3.1"
[225] "Pp3c1_15150V3.1" "Pp3c1_15160V3.1" "Pp3c1_15210V3.1" "Pp3c1_15400V3.1" "Pp3c1_15410V3.1" "Pp3c1_15440V3.1" "Pp3c1_15460V3.1"
[232] "Pp3c1_15560V3.1" "Pp3c1_15690V3.1" "Pp3c1_15730V3.1" "Pp3c1_15750V3.1" "Pp3c1_15940V3.1" "Pp3c1_16170V3.1" "Pp3c1_16250V3.1"
[239] "Pp3c1_16500V3.1" "Pp3c1_16600V3.1" "Pp3c1_16780V3.1" "Pp3c1_16840V3.1" "Pp3c1_16850V3.1" "Pp3c1_16900V3.1" "Pp3c1_16980V3.1"
[246] "Pp3c1_17080V3.1" "Pp3c1_17220V3.1" "Pp3c1_17370V3.1" "Pp3c1_17860V3.1" "Pp3c1_17870V3.1" "Pp3c1_18130V3.1" "Pp3c1_18150V3.1"
[253] "Pp3c1_18250V3.1" "Pp3c1_18260V3.1" "Pp3c1_18280V3.1" "Pp3c1_18420V3.1" "Pp3c1_18440V3.1" "Pp3c1_18460V3.1" "Pp3c1_18530V3.1"
[260] "Pp3c1_18830V3.1" "Pp3c1_18860V3.1" "Pp3c1_18910V3.1" "Pp3c1_18940V3.1" "Pp3c1_19060V3.1" "Pp3c1_19176V3.1" "Pp3c1_19200V3.1"
[267] "Pp3c1_19210V3.1" "Pp3c1_19230V3.1" "Pp3c1_19240V3.1" "Pp3c1_19310V3.1" "Pp3c1_19370V3.1" "Pp3c1_19400V3.1" "Pp3c1_19660V3.1"
[274] "Pp3c1_19950V3.1" "Pp3c1_20010V3.1" "Pp3c1_20040V3.1" "Pp3c1_20050V3.1" "Pp3c1_20230V3.1" "Pp3c1_20280V3.1" "Pp3c1_20310V3.1"
[281] "Pp3c1_20350V3.1" "Pp3c1_20430V3.1" "Pp3c1_20640V3.1" "Pp3c1_20690V3.1" "Pp3c1_20700V3.1" "Pp3c1_20710V3.1" "Pp3c1_20753V3.1"
[288] "Pp3c1_20770V3.1" "Pp3c1_20790V3.1" "Pp3c1_20810V3.1" "Pp3c1_20870V3.1" "Pp3c1_20880V3.1" "Pp3c1_20960V3.1" "Pp3c1_20980V3.1"
[295] "Pp3c1_21050V3.1" "Pp3c1_21110V3.1" "Pp3c1_21160V3.1" "Pp3c1_21200V3.1" "Pp3c1_21230V3.1" "Pp3c1_21270V3.1" "Pp3c1_21290V3.1"
[302] "Pp3c1_21360V3.1" "Pp3c1_21400V3.1" "Pp3c1_21480V3.1" "Pp3c1_21510V3.1" "Pp3c1_21540V3.1" "Pp3c1_21550V3.1" "Pp3c1_21620V3.1"
[309] "Pp3c1_21650V3.1" "Pp3c1_21670V3.1" "Pp3c1_21730V3.1" "Pp3c1_21760V3.1" "Pp3c1_21810V3.1" "Pp3c1_21850V3.1" "Pp3c1_21890V3.1"
[316] "Pp3c1_21920V3.1" "Pp3c1_22040V3.1" "Pp3c1_22090V3.1" "Pp3c1_22120V3.1" "Pp3c1_22260V3.1" "Pp3c1_22300V3.1" "Pp3c1_22360V3.1"
[323] "Pp3c1_22450V3.1" "Pp3c1_22500V3.1" "Pp3c1_22520V3.1" "Pp3c1_22540V3.1" "Pp3c1_22560V3.1" "Pp3c1_22590V3.1" "Pp3c1_22690V3.1"
[330] "Pp3c1_22710V3.1" "Pp3c1_22820V3.1" "Pp3c1_22900V3.1" "Pp3c1_22950V3.1" "Pp3c1_23000V3.1" "Pp3c1_23010V3.1" "Pp3c1_23020V3.1"
[337] "Pp3c1_23040V3.1" "Pp3c1_23190V3.1" "Pp3c1_23260V3.1" "Pp3c1_23300V3.1" "Pp3c1_23410V3.1" "Pp3c1_23460V3.1" "Pp3c1_23490V3.1"
[344] "Pp3c1_23520V3.1" "Pp3c1_23590V3.1" "Pp3c1_23600V3.1" "Pp3c1_23670V3.1" "Pp3c1_23680V3.1" "Pp3c1_23750V3.1" "Pp3c1_23850V3.1"
[351] "Pp3c1_23900V3.1" "Pp3c1_23920V3.1" "Pp3c1_23930V3.1" "Pp3c1_23940V3.1" "Pp3c1_23960V3.1" "Pp3c1_23970V3.1" "Pp3c1_24000V3.1"
[358] "Pp3c1_24090V3.1" "Pp3c1_24120V3.1" "Pp3c1_24300V3.1" "Pp3c1_24350V3.1" "Pp3c1_24420V3.1" "Pp3c1_24440V3.1" "Pp3c1_24500V3.1"
[365] "Pp3c1_24560V3.1" "Pp3c1_24600V3.1" "Pp3c1_24660V3.1" "Pp3c1_24700V3.1" "Pp3c1_24790V3.1" "Pp3c1_24820V3.1" "Pp3c1_24890V3.1"
[372] "Pp3c1_24950V3.1" "Pp3c1_25000V3.1" "Pp3c1_25070V3.1" "Pp3c1_25080V3.1" "Pp3c1_25290V3.1" "Pp3c1_25400V3.1" "Pp3c1_25410V3.1"
[379] "Pp3c1_25450V3.1" "Pp3c1_25640V3.1" "Pp3c1_25660V3.1" "Pp3c1_25700V3.1" "Pp3c1_25750V3.1" "Pp3c1_25770V3.1" "Pp3c1_25850V3.1"
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[911] "Pp3c2_17710V3.1" "Pp3c2_17900V3.1" "Pp3c2_17910V3.1" "Pp3c2_18020V3.1" "Pp3c2_18110V3.1" "Pp3c2_18130V3.1" "Pp3c2_18140V3.1"
[918] "Pp3c2_18330V3.1" "Pp3c2_18450V3.1" "Pp3c2_18480V3.1" "Pp3c2_18510V3.1" "Pp3c2_18520V3.1" "Pp3c2_18540V3.1" "Pp3c2_18600V3.1"
[925] "Pp3c2_18610V3.1" "Pp3c2_18620V3.1" "Pp3c2_18630V3.1" "Pp3c2_18840V3.1" "Pp3c2_18850V3.1" "Pp3c2_19150V3.1" "Pp3c2_19170V3.1"
[932] "Pp3c2_19250V3.1" "Pp3c2_19260V3.1" "Pp3c2_19280V3.1" "Pp3c2_19310V3.1" "Pp3c2_19330V3.1" "Pp3c2_19380V3.1" "Pp3c2_19400V3.1"
[939] "Pp3c2_19430V3.1" "Pp3c2_19520V3.1" "Pp3c2_19550V3.1" "Pp3c2_19600V3.1" "Pp3c2_19610V3.1" "Pp3c2_19640V3.1" "Pp3c2_19660V3.1"
[946] "Pp3c2_19690V3.1" "Pp3c2_19700V3.1" "Pp3c2_19730V3.1" "Pp3c2_19940V3.1" "Pp3c2_19950V3.1" "Pp3c2_19980V3.1" "Pp3c2_20030V3.1"
[953] "Pp3c2_20120V3.1" "Pp3c2_20130V3.1" "Pp3c2_20141V3.1" "Pp3c2_20240V3.1" "Pp3c2_20320V3.1" "Pp3c2_20330V3.1" "Pp3c2_20450V3.1"
[960] "Pp3c2_20500V3.1" "Pp3c2_20550V3.1" "Pp3c2_20630V3.1" "Pp3c2_20660V3.1" "Pp3c2_20840V3.1" "Pp3c2_20850V3.1" "Pp3c2_20860V3.1"
[967] "Pp3c2_20930V3.1" "Pp3c2_21100V3.1" "Pp3c2_21110V3.1" "Pp3c2_21260V3.1" "Pp3c2_21270V3.1" "Pp3c2_21290V3.1" "Pp3c2_21310V3.1"
[974] "Pp3c2_21370V3.1" "Pp3c2_21470V3.1" "Pp3c2_21540V3.1" "Pp3c2_21590V3.1" "Pp3c2_21600V3.1" "Pp3c2_21660V3.1" "Pp3c2_21670V3.1"
[981] "Pp3c2_21710V3.1" "Pp3c2_21860V3.1" "Pp3c2_21970V3.1" "Pp3c2_22000V3.1" "Pp3c2_22020V3.1" "Pp3c2_22120V3.1" "Pp3c2_22140V3.1"
[988] "Pp3c2_22190V3.1" "Pp3c2_22310V3.1" "Pp3c2_22540V3.1" "Pp3c2_22550V3.1" "Pp3c2_22570V3.1" "Pp3c2_22630V3.1" "Pp3c2_23100V3.1"
[995] "Pp3c2_23140V3.1" "Pp3c2_23200V3.1" "Pp3c2_23290V3.1" "Pp3c2_23300V3.1" "Pp3c2_23320V3.1" "Pp3c2_23690V3.1"
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