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runs/RNA-Seq_analysis/DEGs/DEGs_0.9/cop_L_spa_L/cop_L_vs._spa_L_intersection_four_methods_15.tsv 0 → 100755
View file @ 8ebefab1
cop_L_mean spa_L_mean M D prob ranking Length GC
Pp3c1_7380V3.1 106.588375038299 177.243454405668 -0.73368224928517 70.6550793673692 0.933821932681868 -70.6588885424343 1926 46.52
Pp3c1_17220V3.1 66.1968525755919 22.8053694490741 1.53738908147907 43.3914831265177 0.98266377126312 43.418709942912 2619 46.35
Pp3c1_35100V3.1 31.7102722363129 9.45851741876056 1.74526429293659 22.2517548175524 0.974647122692725 22.3200927397864 2330 51.16
Pp3c5_4560V3.1 107.661930232276 244.545471889034 -1.18359455508463 136.883541656759 0.975497647484618 -136.888658670353 1455 46.39
Pp3c5_22920V3.1 29.6666234384195 3.72631626690576 2.99301870145019 25.9403071715138 0.984401013391241 26.1124050424261 1808 50.83
Pp3c6_29090V3.1 6.51297197637705 0.243390409234994 4.74197179405819 6.26958156714206 0.9076185305827 7.8609127665107 2052 47.81
Pp3c8_5640V3.1 115.322809131566 21.1128525427426 2.44948446628772 94.2099565888239 0.99614549402823 94.241794839756 1471 47.72
Pp3c9_16700V3.1 228.561137037704 24.2396381577684 3.23714005051758 204.321498879936 0.998968512486428 204.347140866346 1654 45.1
Pp3c10_3020V3.1 285.466400967782 164.394145901356 0.796162026848169 121.072255066426 0.944743032935215 121.074872788877 1857 53.2
Pp3c13_7900V3.1 150.865605026107 69.8102509958878 1.11175312802666 81.0553540302197 0.970901194353963 81.0629780601597 1300 52.31
Pp3c14_11870V3.1 77.6492240037988 32.1311823239037 1.27299743863879 45.5180416798951 0.97509048136084 45.5358390814472 4103 51.74
Pp3c16_11800V3.1 170.954319089948 94.5807202821844 0.853992838487831 76.3735988077637 0.949583785740138 76.3783732388786 1919 50.08
Pp3c19_12890V3.1 161.328065751979 251.797139971426 -0.642264454764111 90.4690742194472 0.918982989504162 -90.4713539953598 2203 51.16
Pp3c20_21960V3.1 129.538389814747 50.4617776116715 1.36011678236266 79.0766122030758 0.981677524429967 79.0883083342747 2442 51.84
Pp3c23_14870V3.1 7.39375304896652 0.360322455095299 4.35894639074488 7.03343059387122 0.918982989504162 8.27463349981082 1843 49.27
runs/RNA-Seq_analysis/DEGs/DEGs_0.9/cop_L_spa_L/cop_L_vs._spa_L_intersection_four_methods_15.tsv.filter_-1_1.tsv 0 → 100755
View file @ 8ebefab1
cop_L_mean spa_L_mean M D prob ranking Length GC
Pp3c1_17220V3.1 66.1968525755919 22.8053694490741 1.53738908147907 43.3914831265177 0.98266377126312 43.418709942912 2619 46.35
Pp3c1_35100V3.1 31.7102722363129 9.45851741876056 1.74526429293659 22.2517548175524 0.974647122692725 22.3200927397864 2330 51.16
Pp3c5_4560V3.1 107.661930232276 244.545471889034 -1.18359455508463 136.883541656759 0.975497647484618 -136.888658670353 1455 46.39
Pp3c5_22920V3.1 29.6666234384195 3.72631626690576 2.99301870145019 25.9403071715138 0.984401013391241 26.1124050424261 1808 50.83
Pp3c6_29090V3.1 6.51297197637705 0.243390409234994 4.74197179405819 6.26958156714206 0.9076185305827 7.8609127665107 2052 47.81
Pp3c8_5640V3.1 115.322809131566 21.1128525427426 2.44948446628772 94.2099565888239 0.99614549402823 94.241794839756 1471 47.72
Pp3c9_16700V3.1 228.561137037704 24.2396381577684 3.23714005051758 204.321498879936 0.998968512486428 204.347140866346 1654 45.1
Pp3c13_7900V3.1 150.865605026107 69.8102509958878 1.11175312802666 81.0553540302197 0.970901194353963 81.0629780601597 1300 52.31
Pp3c14_11870V3.1 77.6492240037988 32.1311823239037 1.27299743863879 45.5180416798951 0.97509048136084 45.5358390814472 4103 51.74
Pp3c20_21960V3.1 129.538389814747 50.4617776116715 1.36011678236266 79.0766122030758 0.981677524429967 79.0883083342747 2442 51.84
Pp3c23_14870V3.1 7.39375304896652 0.360322455095299 4.35894639074488 7.03343059387122 0.918982989504162 8.27463349981082 1843 49.27
runs/RNA-Seq_analysis/DEGs/DEGs_0.9/cop_L_spa_L/cop_L_vs._spa_L_intersection_three_methods_95.tsv 0 → 100755
View file @ 8ebefab1
cop_L_mean spa_L_mean M D prob ranking Length GC
Pp3c1_40V3.1 21.9798619047304 10.0938859257128 1.12270063466322 11.8859759790175 0.933179515019906 11.9388810903223 1068 42.51
Pp3c1_3260V3.1 19.2050579077114 7.08606415089274 1.43842988243656 12.1189937568187 0.945195439739414 12.2040603982648 3893 50.37
Pp3c1_7380V3.1 106.588375038299 177.243454405668 -0.73368224928517 70.6550793673692 0.933821932681868 -70.6588885424343 1926 46.52
Pp3c1_17220V3.1 66.1968525755919 22.8053694490741 1.53738908147907 43.3914831265177 0.98266377126312 43.418709942912 2619 46.35
Pp3c1_30790V3.1 119.478374369825 66.3397987055489 0.848802973812289 53.1385756642765 0.948127035830619 53.1453543606249 1332 48.57
Pp3c1_31850V3.1 29.8167824085392 13.255355545928 1.16954921391231 16.5614268626112 0.950072385088672 16.6026716250543 396 54.29
Pp3c1_32350V3.1 17.8028711392578 8.48627182610492 1.06890713323312 9.31659931315285 0.916883821932682 9.37771748461835 561 48.48
Pp3c1_35100V3.1 31.7102722363129 9.45851741876056 1.74526429293659 22.2517548175524 0.974647122692725 22.3200927397864 2330 51.16
Pp3c1_42020V3.1 20.109754525759 33.8134699970214 -0.749702604530085 13.7037154712623 0.908134274339486 -13.7242075076324 3048 46.06
Pp3c2_15860V3.1 19.5329853590426 7.92461517293674 1.30149967959122 11.6083701861059 0.939196525515744 11.6811026788419 3284 45.52
Pp3c2_26060V3.1 26.6608576234275 45.7642363028951 -0.779497416040109 19.1033786794676 0.923688020267825 -19.1192754358723 2263 50.15
Pp3c2_29420V3.1 30.1412515270662 12.6820231488169 1.24895440651342 17.4592283782493 0.955039811798769 17.5038436542781 3272 50.76
Pp3c3_23880V3.1 93.4534428138362 59.4124634569242 0.653482204501663 34.040979356912 0.914739413680782 34.0472512043088 2146 46.83
Pp3c3_31900V3.1 55.0548001053605 140.286266523943 -1.34943352192395 85.231466418582 0.981695620702135 -85.2421482524459 1645 48.45
Pp3c3_32490V3.1 11.5241531504607 22.5044065915032 -0.965546784991366 10.9802534410424 0.919978284473398 -11.0226242893211 2489 50.26
Pp3c4_6480V3.1 19.7916249985713 9.39564698495446 1.07482565598271 10.3959780136168 0.923353239232718 10.4513926847269 1688 43.84
Pp3c4_26990V3.1 10.1876397553949 19.4188608782041 -0.930638723338326 9.23122112280925 0.90656894679696 -9.27801335694105 1335 47.64
Pp3c4_30220V3.1 13.4327851266257 76.1779240529443 -2.50361451186419 62.7451389263186 0.994797321751719 -62.7950678358343 2208 49.91
Pp3c4_32350V3.1 12.2561013362764 3.92360966074889 1.64324670327982 8.33249167552748 0.925497647484618 8.49297811433508 3241 48.9
Pp3c5_4530V3.1 43.6175447709616 27.0952444373765 0.686868900715217 16.5223003335851 0.906469417300036 16.5365715068135 1865 46.11
Pp3c5_4560V3.1 107.661930232276 244.545471889034 -1.18359455508463 136.883541656759 0.975497647484618 -136.888658670353 1455 46.39
Pp3c5_10730V3.1 70.1391995752148 132.612317454311 -0.918921911944556 62.473117879096 0.955890336590662 -62.4798757602452 1048 51.53
Pp3c5_15990V3.1 2.75890512498718 9.20013288635838 -1.73755885433612 6.4412277613712 0.904180238870793 -6.6714710406432 3763 49.06
Pp3c5_22920V3.1 29.6666234384195 3.72631626690576 2.99301870145019 25.9403071715138 0.984401013391241 26.1124050424261 1808 50.83
Pp3c6_10090V3.1 26.2805936095118 51.661093200158 -0.975080309926059 25.3804995906462 0.950760043431053 -25.3992232377606 1558 46.85
Pp3c6_15900V3.1 69.2757262353666 38.2670161168652 0.856248519158441 31.0087101185014 0.943096272167933 31.0205297301612 3962 49.34
Pp3c6_17399V3.1 119.990584320953 48.9821477020889 1.29259326406377 71.0084366188637 0.978791169019182 71.02020042496 1383 52.71
Pp3c6_29090V3.1 6.51297197637705 0.243390409234994 4.74197179405819 6.26958156714206 0.9076185305827 7.8609127665107 2052 47.81
Pp3c7_14450V3.1 443.888407303472 674.310824512099 -0.603216725624466 230.422417208627 0.911011581614187 -230.423206779796 2320 47.07
Pp3c7_23900V3.1 19.2067390305587 9.67901138818833 0.98868099170298 9.52772764237037 0.913545059717698 9.57888741611171 2709 49.91
Pp3c8_2950V3.1 34.8776958056594 11.2373620786793 1.63400132265373 23.6403337269801 0.974086138255519 23.6967368860235 2517 47.79
Pp3c8_3670V3.1 112.916796209895 65.8740458230801 0.777478036105693 47.0427503868144 0.938726022439378 47.0491746585714 1815 46.56
Pp3c8_5640V3.1 115.322809131566 21.1128525427426 2.44948446628772 94.2099565888239 0.99614549402823 94.241794839756 1471 47.72
Pp3c8_20150V3.1 47.337688349943 75.57353275677 -0.674891808123533 28.2358444068271 0.915318494390156 -28.2439088711039 1777 48.28
Pp3c8_21830V3.1 87.2423338040806 44.9875156937283 0.955503663343175 42.2548181103523 0.956605139341296 42.2656200805054 2164 46.03
Pp3c9_5280V3.1 39.8583574709517 100.034634414381 -1.32754541819236 60.1762769434293 0.979659790083243 -60.1909186141038 2500 50.6
Pp3c9_12590V3.1 9.75565741734638 18.4152119504082 -0.916587000057654 8.6595545330618 0.901610568222946 -8.70792836670961 3077 48.59
Pp3c9_16700V3.1 228.561137037704 24.2396381577684 3.23714005051758 204.321498879936 0.998968512486428 204.347140866346 1654 45.1
Pp3c10_3020V3.1 285.466400967782 164.394145901356 0.796162026848169 121.072255066426 0.944743032935215 121.074872788877 1857 53.2
Pp3c11_10470V3.1 15.7063883471988 26.7777787916093 -0.769684820612638 11.0713904444105 0.901176257690916 -11.0981125014872 1406 48.08
Pp3c11_23950V3.1 70.4996074077166 44.3890188507186 0.667412403059026 26.1105885569979 0.91400651465798 26.1191170239078 1747 49
Pp3c11_26420V3.1 24.9218010520606 12.7938063873959 0.961962777214304 12.1279946646647 0.924502352515382 12.1660851127584 1334 45.58
Pp3c13_7900V3.1 150.865605026107 69.8102509958878 1.11175312802666 81.0553540302197 0.970901194353963 81.0629780601597 1300 52.31
Pp3c13_12570V3.1 44.9715384825629 23.215634637999 0.953915519735477 21.7559038445639 0.944643503438292 21.7768066279861 2310 49.87
Pp3c13_15786V3.1 13.3899734000644 29.4167541125908 -1.13548497163656 16.0267807125264 0.947231270358306 -16.0669544758246 2298 46.61
Pp3c13_15980V3.1 226.899349698 480.561576763779 -1.08266882839267 253.662227065779 0.970276872964169 -253.664537552577 798 57.14
Pp3c13_16130V3.1 216.593388492084 385.59766821539 -0.8321071219475 169.004279723306 0.948416576185306 -169.00632818642 1736 48.04
Pp3c13_24510V3.1 51.799026817394 87.824906027523 -0.761705134467917 36.0258792101291 0.933206659428158 -36.0339307816214 2822 50.67
Pp3c14_11870V3.1 77.6492240037988 32.1311823239037 1.27299743863879 45.5180416798951 0.97509048136084 45.5358390814472 4103 51.74
Pp3c14_15640V3.1 12.3103616940404 27.9726308179204 -1.18414279459542 15.66226912388 0.948407528049222 -15.7069687803483 2159 47.2
Pp3c15_10680V3.1 69.1103555013701 27.934224384417 1.3068681370627 41.1761311169531 0.975714802750633 41.1968649060603 936 53.74
Pp3c15_14890V3.1 115.502378141232 63.6736010926088 0.859155292392295 51.8287770486227 0.94895041621426 51.8358975823925 1253 52.51
Pp3c15_23370V3.1 54.2194985128276 93.3100868636659 -0.783221276052729 39.0905883508383 0.936943539630836 -39.0984338967938 1472 42.73
Pp3c16_11630V3.1 14.4097677028043 29.8464941395761 -1.05051439979258 15.4367264367718 0.940933767643865 -15.4724304357105 1839 49.59
Pp3c16_11800V3.1 170.954319089948 94.5807202821844 0.853992838487831 76.3735988077637 0.949583785740138 76.3783732388786 1919 50.08
Pp3c16_12300V3.1 21.4105806529094 35.238908202295 -0.718845304308482 13.8283275493856 0.904542164314151 -13.846999002839 2174 53.82
Pp3c16_13700V3.1 32.3952205270321 19.1447553151471 0.758831757290797 13.250465211885 0.90823380383641 13.2721759318978 1560 45.19
Pp3c16_22330V3.1 30.2084702440772 49.1330642097161 -0.701741088452258 18.924593965639 0.912251176257691 -18.9376000939803 2186 45.97
Pp3c17_1110V3.1 133.599674089031 213.059781287598 -0.67334179680232 79.4601071985679 0.924013753166848 -79.4629600831937 748 53.07
Pp3c17_5070V3.1 100.888604534966 59.7931495184797 0.754711119945927 41.095455016486 0.933134274339486 41.1023845036586 2648 50.23
Pp3c17_15490V3.1 42.0379292737006 17.877361159151 1.23355780706216 24.1605681145496 0.96370792616721 24.1920382870306 1891 52.78
Pp3c17_21100V3.1 27.1483081674224 12.3009806506706 1.14208896100006 14.8473275167518 0.944145855953674 14.8911887230179 1609 42.45
Pp3c18_5720V3.1 46.8535108824369 25.789995263256 0.861345649505076 21.0635156191809 0.935432500904814 21.0811196706295 2270 48.02
Pp3c18_8820V3.1 121.168555837418 80.9178332545312 0.58248576270929 40.2507225828864 0.901746290264206 40.254937065014 2433 47.23
Pp3c18_10780V3.1 34.9126845512561 57.1825299551785 -0.711823156529662 22.2698454039224 0.917851972493666 -22.2812186946939 1954 56.4
Pp3c18_19690V3.1 22.3663552038552 11.1084401809877 1.00967392421801 11.2579150228675 0.924049945711183 11.3031009946542 2002 50.35
Pp3c19_1760V3.1 84.4281177880671 45.8926409928559 0.879460719317349 38.5354767952112 0.948226565327543 38.5455110614853 1682 50.83
Pp3c19_1840V3.1 121.005015652496 189.417364139129 -0.646501742237961 68.412348486633 0.920304017372421 -68.4154031630249 1492 45.24
Pp3c19_12890V3.1 161.328065751979 251.797139971426 -0.642264454764111 90.4690742194472 0.918982989504162 -90.4713539953598 2203 51.16
Pp3c19_15500V3.1 22.0045514923038 9.95035736433351 1.14498172061247 12.0541941279703 0.934563879840753 12.1084507355537 1530 47.71
Pp3c19_19100V3.1 137.205248372762 205.321954902835 -0.58155223334266 68.1167065300736 0.904985522982266 -68.1191890109114 945 52.38
Pp3c19_19970V3.1 17.9394466132052 7.54435219151739 1.24966645568312 10.3950944216878 0.931017010495838 10.4699405101588 3835 46.78
Pp3c20_8330V3.1 34.3170887668691 18.9974931945297 0.853118108439812 15.3195955723394 0.92433948606587 15.3433314181435 3726 46.38
Pp3c20_21960V3.1 129.538389814747 50.4617776116715 1.36011678236266 79.0766122030758 0.981677524429967 79.0883083342747 2442 51.84
Pp3c22_1450V3.1 32.9228277867388 18.376614504847 0.841217250493524 14.5462132818918 0.921579804560261 14.5705170568794 1144 50.35
Pp3c22_5700V3.1 33.3994471044445 78.5514235000881 -1.23381319963869 45.1519763956437 0.973597538906985 -45.1688307070746 1608 48.38
Pp3c22_11010V3.1 46.4345844204809 75.550330268957 -0.702238338992554 29.1157458484761 0.92123597538907 -29.1242132082191 1181 48.43
Pp3c22_12960V3.1 17.2017729041363 32.8562358798204 -0.933609945548859 15.6544629756841 0.932491856677524 -15.6822778507299 2138 49.86
Pp3c22_22231V3.1 18.2712509761283 9.21619081679332 0.987332921712822 9.05506015933495 0.910323923271806 9.10872882390694 4763 50.39
Pp3c23_1340V3.1 27.109978995897 4.48698841711955 2.59500463050913 22.6229905787775 0.980392689106044 22.7713361874049 654 60.86
Pp3c23_1420V3.1 17.8968098508845 2.78883577095136 2.68196756205959 15.1079740799332 0.966549040897575 15.3441790527833 1194 54.61
Pp3c23_1470V3.1 8.66111734245357 1.42768142789505 2.60087906128879 7.23343591455852 0.920086862106406 7.68681774347978 1766 52.32
Pp3c23_1980V3.1 24.9345021201094 7.30102419624355 1.77197263000917 17.6334779238658 0.967227651103873 17.7222862716119 1332 44.22
Pp3c23_14870V3.1 7.39375304896652 0.360322455095299 4.35894639074488 7.03343059387122 0.918982989504162 8.27463349981082 1843 49.27
Pp3c23_17650V3.1 71.2639154376517 46.1576495237066 0.626601991528268 25.1062659139451 0.906351791530945 25.114084060493 1736 48.91
Pp3c24_13310V3.1 18.4812078354673 7.38874751711748 1.32265731107547 11.0924603183499 0.937296416938111 11.1710383705682 1485 49.63
Pp3c24_16040V3.1 31.9956378128969 67.2414674678214 -1.07147598417674 35.2458296549245 0.962495475931958 -35.2621123707673 1341 46.83
Pp3c25_1480V3.1 52.9268943749223 32.5100260931665 0.70311628855765 20.4168682817558 0.914151284835324 20.428971656689 1483 47.81
Pp3c25_4320V3.1 18.9003355654622 7.84912529048103 1.26780805537271 11.0512102749812 0.935360115816142 11.1236947911707 1923 47.74
Pp3c26_10100V3.1 17.3545572385859 30.7681079489791 -0.826121170844586 13.4135507103932 0.917019543973941 -13.4389664353032 6101 48.43
Pp3c27_1590V3.1 8.3262822082112 2.05102624613436 2.02132650402025 6.27525596207684 0.903954035468693 6.59276863126833 2569 48.62
Pp3c27_3260V3.1 15.9619621811652 28.1555846813665 -0.818783099435824 12.1936225002012 0.911500180962722 -12.2210815986694 1800 46.17
Pp3c27_4700V3.1 49.7362836536296 26.2081820108157 0.924281430554133 23.5281016428139 0.943666304741223 23.5462494482126 2583 46.73
Pp3c27_7710V3.1 70.829977061251 39.4684668538035 0.843659595997145 31.3615102074475 0.941205211726384 31.3728558471451 2207 47.53
Pp3s123_10V3.1 18.3907092482299 8.31904856143356 1.14448667539037 10.0716606867963 0.924592833876221 10.1364786163689 2150 46.14
runs/RNA-Seq_analysis/DEGs/DEGs_0.9/cop_L_spa_L/cop_L_vs._spa_L_intersection_three_methods_95.tsv.filter_-1_1.tsv 0 → 100755
View file @ 8ebefab1
cop_L_mean spa_L_mean M D prob ranking Length GC
Pp3c1_40V3.1 21.9798619047304 10.0938859257128 1.12270063466322 11.8859759790175 0.933179515019906 11.9388810903223 1068 42.51
Pp3c1_3260V3.1 19.2050579077114 7.08606415089274 1.43842988243656 12.1189937568187 0.945195439739414 12.2040603982648 3893 50.37
Pp3c1_17220V3.1 66.1968525755919 22.8053694490741 1.53738908147907 43.3914831265177 0.98266377126312 43.418709942912 2619 46.35
Pp3c1_31850V3.1 29.8167824085392 13.255355545928 1.16954921391231 16.5614268626112 0.950072385088672 16.6026716250543 396 54.29
Pp3c1_32350V3.1 17.8028711392578 8.48627182610492 1.06890713323312 9.31659931315285 0.916883821932682 9.37771748461835 561 48.48
Pp3c1_35100V3.1 31.7102722363129 9.45851741876056 1.74526429293659 22.2517548175524 0.974647122692725 22.3200927397864 2330 51.16
Pp3c2_15860V3.1 19.5329853590426 7.92461517293674 1.30149967959122 11.6083701861059 0.939196525515744 11.6811026788419 3284 45.52
Pp3c2_29420V3.1 30.1412515270662 12.6820231488169 1.24895440651342 17.4592283782493 0.955039811798769 17.5038436542781 3272 50.76
Pp3c3_31900V3.1 55.0548001053605 140.286266523943 -1.34943352192395 85.231466418582 0.981695620702135 -85.2421482524459 1645 48.45
Pp3c4_6480V3.1 19.7916249985713 9.39564698495446 1.07482565598271 10.3959780136168 0.923353239232718 10.4513926847269 1688 43.84
Pp3c4_30220V3.1 13.4327851266257 76.1779240529443 -2.50361451186419 62.7451389263186 0.994797321751719 -62.7950678358343 2208 49.91
Pp3c4_32350V3.1 12.2561013362764 3.92360966074889 1.64324670327982 8.33249167552748 0.925497647484618 8.49297811433508 3241 48.9
Pp3c5_4560V3.1 107.661930232276 244.545471889034 -1.18359455508463 136.883541656759 0.975497647484618 -136.888658670353 1455 46.39
Pp3c5_15990V3.1 2.75890512498718 9.20013288635838 -1.73755885433612 6.4412277613712 0.904180238870793 -6.6714710406432 3763 49.06
Pp3c5_22920V3.1 29.6666234384195 3.72631626690576 2.99301870145019 25.9403071715138 0.984401013391241 26.1124050424261 1808 50.83
Pp3c6_17399V3.1 119.990584320953 48.9821477020889 1.29259326406377 71.0084366188637 0.978791169019182 71.02020042496 1383 52.71
Pp3c6_29090V3.1 6.51297197637705 0.243390409234994 4.74197179405819 6.26958156714206 0.9076185305827 7.8609127665107 2052 47.81
Pp3c8_2950V3.1 34.8776958056594 11.2373620786793 1.63400132265373 23.6403337269801 0.974086138255519 23.6967368860235 2517 47.79
Pp3c8_5640V3.1 115.322809131566 21.1128525427426 2.44948446628772 94.2099565888239 0.99614549402823 94.241794839756 1471 47.72
Pp3c9_5280V3.1 39.8583574709517 100.034634414381 -1.32754541819236 60.1762769434293 0.979659790083243 -60.1909186141038 2500 50.6
Pp3c9_16700V3.1 228.561137037704 24.2396381577684 3.23714005051758 204.321498879936 0.998968512486428 204.347140866346 1654 45.1
Pp3c13_7900V3.1 150.865605026107 69.8102509958878 1.11175312802666 81.0553540302197 0.970901194353963 81.0629780601597 1300 52.31
Pp3c13_15786V3.1 13.3899734000644 29.4167541125908 -1.13548497163656 16.0267807125264 0.947231270358306 -16.0669544758246 2298 46.61
Pp3c13_15980V3.1 226.899349698 480.561576763779 -1.08266882839267 253.662227065779 0.970276872964169 -253.664537552577 798 57.14
Pp3c14_11870V3.1 77.6492240037988 32.1311823239037 1.27299743863879 45.5180416798951 0.97509048136084 45.5358390814472 4103 51.74
Pp3c14_15640V3.1 12.3103616940404 27.9726308179204 -1.18414279459542 15.66226912388 0.948407528049222 -15.7069687803483 2159 47.2
Pp3c15_10680V3.1 69.1103555013701 27.934224384417 1.3068681370627 41.1761311169531 0.975714802750633 41.1968649060603 936 53.74
Pp3c16_11630V3.1 14.4097677028043 29.8464941395761 -1.05051439979258 15.4367264367718 0.940933767643865 -15.4724304357105 1839 49.59
Pp3c17_15490V3.1 42.0379292737006 17.877361159151 1.23355780706216 24.1605681145496 0.96370792616721 24.1920382870306 1891 52.78
Pp3c17_21100V3.1 27.1483081674224 12.3009806506706 1.14208896100006 14.8473275167518 0.944145855953674 14.8911887230179 1609 42.45
Pp3c18_19690V3.1 22.3663552038552 11.1084401809877 1.00967392421801 11.2579150228675 0.924049945711183 11.3031009946542 2002 50.35
Pp3c19_15500V3.1 22.0045514923038 9.95035736433351 1.14498172061247 12.0541941279703 0.934563879840753 12.1084507355537 1530 47.71
Pp3c19_19970V3.1 17.9394466132052 7.54435219151739 1.24966645568312 10.3950944216878 0.931017010495838 10.4699405101588 3835 46.78
Pp3c20_21960V3.1 129.538389814747 50.4617776116715 1.36011678236266 79.0766122030758 0.981677524429967 79.0883083342747 2442 51.84
Pp3c22_5700V3.1 33.3994471044445 78.5514235000881 -1.23381319963869 45.1519763956437 0.973597538906985 -45.1688307070746 1608 48.38
Pp3c23_1340V3.1 27.109978995897 4.48698841711955 2.59500463050913 22.6229905787775 0.980392689106044 22.7713361874049 654 60.86
Pp3c23_1420V3.1 17.8968098508845 2.78883577095136 2.68196756205959 15.1079740799332 0.966549040897575 15.3441790527833 1194 54.61
Pp3c23_1470V3.1 8.66111734245357 1.42768142789505 2.60087906128879 7.23343591455852 0.920086862106406 7.68681774347978 1766 52.32
Pp3c23_1980V3.1 24.9345021201094 7.30102419624355 1.77197263000917 17.6334779238658 0.967227651103873 17.7222862716119 1332 44.22
Pp3c23_14870V3.1 7.39375304896652 0.360322455095299 4.35894639074488 7.03343059387122 0.918982989504162 8.27463349981082 1843 49.27
Pp3c24_13310V3.1 18.4812078354673 7.38874751711748 1.32265731107547 11.0924603183499 0.937296416938111 11.1710383705682 1485 49.63
Pp3c24_16040V3.1 31.9956378128969 67.2414674678214 -1.07147598417674 35.2458296549245 0.962495475931958 -35.2621123707673 1341 46.83
Pp3c25_4320V3.1 18.9003355654622 7.84912529048103 1.26780805537271 11.0512102749812 0.935360115816142 11.1236947911707 1923 47.74
Pp3c27_1590V3.1 8.3262822082112 2.05102624613436 2.02132650402025 6.27525596207684 0.903954035468693 6.59276863126833 2569 48.62
Pp3s123_10V3.1 18.3907092482299 8.31904856143356 1.14448667539037 10.0716606867963 0.924592833876221 10.1364786163689 2150 46.14
runs/RNA-Seq_analysis/DEGs/DEGs_0.9/cop_L_spa_L/edgeR/cop_L vs. spa_L_287_edgeR_fdr.tsv 0 → 100755
View file @ 8ebefab1
logFC logCPM PValue p.adjust(et.normal$table[, 3], method = "BH")
Pp3c1_40V3.1 -1.12348372026532 4.10454326254099 9.89485572930093e-09 2.60384375767276e-06
Pp3c1_3260V3.1 -1.43856374150963 5.67665885719696 3.12192694811822e-13 2.32769386619814e-10
Pp3c1_4350V3.1 0.574180288369896 5.98988405466468 1.95624339596237e-06 0.000262022556500963
Pp3c1_7380V3.1 0.735656033951666 8.09430947704825 6.21330964416085e-11 2.74313687084006e-08
Pp3c1_7740V3.1 1.31261852846033 3.50517862366114 3.57704268465115e-11 1.6971983586341e-08
Pp3c1_12470V3.1 -0.687705305644672 5.22159605125739 4.64272052544595e-06 0.000550707550205833
Pp3c1_13930V3.1 1.55711694344821 1.51354548829519 2.6139745743162e-06 0.000334275544069001
Pp3c1_14760V3.1 0.577294984994381 6.30165145090014 3.32551669262509e-06 0.00040999431192738
Pp3c1_17220V3.1 -1.53483338365847 6.86385172896439 1.79307995737991e-32 9.35838314422529e-29
Pp3c1_20930V3.1 0.776918496229421 4.12558512648506 3.30471679703745e-06 0.000409040341894181
Pp3c1_30790V3.1 -0.845470687670755 6.95129463592571 9.65784787230254e-09 2.56301276373859e-06
Pp3c1_30900V3.1 -3.21207987705994 0.513041487308079 1.7634115397132e-11 8.765274978749e-09
Pp3c1_31850V3.1 -1.16190448762125 3.11274310218732 9.64484340200137e-08 1.94856949118499e-05
Pp3c1_32350V3.1 -1.06894415995746 2.90555149743391 4.98661591116516e-07 7.7304889731751e-05
Pp3c1_33500V3.1 1.05222168557052 4.82110059326716 5.3465563524392e-11 2.42648423444396e-08
Pp3c1_33830V3.1 -0.676258216876323 5.26931567709811 3.86921354870585e-06 0.000467533772588086
Pp3c1_34530V3.1 -1.44685808504403 2.36480454534329 1.31370034628856e-08 3.3445956377257e-06
Pp3c1_35100V3.1 -1.74043117019168 5.58343703852269 5.77655087400363e-27 2.58418129456319e-23
Pp3c1_38340V3.1 -0.830911488632523 3.71638029792603 7.65241392621569e-06 0.000849770716664696
Pp3c1_39780V3.1 -0.969337312262537 3.66561742466377 1.13963331512392e-06 0.000165988917502816
Pp3c1_42020V3.1 0.751021923087929 6.36270976915557 2.81725807853877e-07 4.87416777510727e-05
Pp3c2_13490V3.1 2.20522848363417 1.01823443342592 7.53572413557681e-07 0.000112372000621708
Pp3c2_15860V3.1 -1.30228197036745 5.49461651383687 2.57181342030334e-17 3.22145349027196e-14
Pp3c2_20010V3.1 2.37299224949463 0.659533442852837 5.61816082465505e-07 8.54042263223655e-05
Pp3c2_22630V3.1 0.567404769972642 6.82963476533359 1.3815286635796e-06 0.0001945323697827
Pp3c2_26060V3.1 0.781717791968076 6.35973123898051 1.61258169543729e-08 4.00777744385864e-06
Pp3c2_26550V3.1 -2.10272354369156 2.06937137023278 5.52537675878043e-12 3.14594860365835e-09
Pp3c2_29420V3.1 -1.24757438313413 6.1299678921116 8.68095601064682e-18 1.18193103249307e-14
Pp3c2_29570V3.1 -3.52076413834459 0.765448437963761 7.89192161777201e-12 4.18873771967001e-09
Pp3c2_37990V3.1 1.23188349630763 3.46939176459304 4.11786521672851e-07 6.64695614751821e-05
Pp3c2_38120V3.1 0.79091157971229 5.35685039074816 6.28217361227404e-06 0.000717979075431977
Pp3c3_570V3.1 -1.37160311563326 2.17572564969259 1.37652427384083e-06 0.0001945323697827
Pp3c3_1350V3.1 1.50783196891595 3.07518848009932 4.69141234637702e-11 2.16046437686465e-08
Pp3c3_1680V3.1 0.998627920902672 3.61805059306432 4.61088866855111e-08 1.03877682486099e-05
Pp3c3_2470V3.1 -2.59874317894002 0.635280088523005 2.46520025088121e-08 5.89295769895764e-06
Pp3c3_7160V3.1 -0.852284070134866 5.90789062261093 1.32638279250705e-10 5.53809028631442e-08
Pp3c3_8110V3.1 -3.94863379164033 0.286868117931423 9.32301343217216e-12 4.86583609380785e-09
Pp3c3_8130V3.1 -5.50579383221668 0.149898757499742 1.55213367949984e-13 1.2790806887773e-10
Pp3c3_15040V3.1 -1.4950625413926 3.76448805523458 3.55598233441096e-06 0.000434982760945622
Pp3c3_16280V3.1 -0.661460974345825 5.74159961803116 1.46749466195869e-06 0.000203338917430249
Pp3c3_17970V3.1 1.17870991414558 2.66938868865606 3.66012027310605e-07 6.00087258389089e-05
Pp3c3_21120V3.1 1.66929105029151 2.29409442902573 2.20666991874197e-09 7.19811130264634e-07
Pp3c3_22850V3.1 2.68344456995087 6.68978539763422 2.91278902565039e-06 0.000366321238306192
Pp3c3_23430V3.1 0.636794341196475 6.11923053736259 1.80622036524591e-06 0.000244856236959636
Pp3c3_23880V3.1 -0.651023390375821 7.35709438231473 2.42298109896694e-08 5.83658870108844e-06
Pp3c3_27000V3.1 2.2486309370437 1.63801937933905 1.92780067651525e-07 3.5303554494196e-05
Pp3c3_30190V3.1 -1.35627218305628 2.28500839128889 2.99781040719099e-06 0.00037400969283341
Pp3c3_31900V3.1 1.34938762742535 7.32797748496174 1.23511558395913e-09 4.39518687632731e-07
Pp3c3_32230V3.1 0.577720101777999 7.76263409357511 1.69435748491992e-06 0.000231697836857062
Pp3c3_32490V3.1 0.966271988282362 5.41115396009095 3.77001986743146e-11 1.76206227087487e-08
Pp3c3_38100V3.1 -1.67186568704225 1.11806616295251 7.58078499273342e-06 0.000847829578740882
Pp3c4_1630V3.1 -0.625325844300011 5.44089541102722 4.2140228376067e-06 0.000503672233433793
Pp3c4_3600V3.1 -4.60154798559458 1.33363853259535 6.36359600418639e-25 2.21417787634552e-21
Pp3c4_3820V3.1 0.765914604831184 4.40177043670063 5.55665959265621e-06 0.000644469611644552
Pp3c4_6480V3.1 -1.07453651230987 4.62672207889207 8.76616765365283e-11 3.81267416769637e-08
Pp3c4_6500V3.1 1.31559863957466 3.40947274749238 1.42306380590852e-09 4.89705967934345e-07
Pp3c4_7080V3.1 -0.946934310842291 3.87372519834193 2.09453521711512e-06 0.000275589791277142
Pp3c4_14700V3.1 0.581680171123444 6.17744039040504 3.65777974757537e-06 0.000445694057569349
Pp3c4_14760V3.1 -1.52797143075867 1.4133607507536 2.03539561647867e-06 0.000268938454557086
Pp3c4_16930V3.1 1.5391479157553 2.46255109446577 4.9059998641284e-08 1.08958429606511e-05
Pp3c4_24380V3.1 -6.82260638225007 -0.281814687320311 1.49130255899434e-10 6.14475521511946e-08
Pp3c4_26990V3.1 0.931127764242314 4.32140868110433 3.15049446977022e-07 5.36183338700295e-05
Pp3c4_30220V3.1 2.50579371804349 6.63224139044902 1.42029599866889e-47 2.22382845991581e-43
Pp3c4_30520V3.1 0.681394508218984 5.34364784555239 5.82370855883139e-06 0.000668019903002949
Pp3c4_32350V3.1 -1.63571086653968 4.71505293090584 1.89318505243009e-16 2.11732463988744e-13
Pp3c5_2310V3.1 -5.55719594646986 0.190516450251569 8.03765730668206e-13 5.59331641241664e-10
Pp3c5_3100V3.1 -1.13690295540153 3.4285540695102 2.86283271273484e-07 4.92580254941162e-05
Pp3c5_4530V3.1 -0.68374614583923 6.04434943100723 8.20633681187952e-08 1.67961723701965e-05
Pp3c5_4560V3.1 1.18614752291513 8.00166310328111 1.21107500250269e-21 2.70891526452656e-18
Pp3c5_5690V3.1 -0.702417385225039 4.68325211334638 2.23893591613687e-06 0.000290922316239942
Pp3c5_8420V3.1 -0.639940565188873 6.5057199767002 2.93135854350438e-06 0.000367181971159358
Pp3c5_8950V3.1 -1.14748840855921 4.02417062760472 1.60643105523159e-07 3.04881142391378e-05
Pp3c5_10730V3.1 0.921093928567035 6.73386709819311 9.64250235355375e-12 4.95008133117272e-09
Pp3c5_14790V3.1 -1.61885803881163 2.10399340745613 8.60622115642812e-09 2.32330875442713e-06
Pp3c5_15990V3.1 1.73456045175125 4.50599954088323 3.82936606794185e-10 1.44477829418794e-07
Pp3c5_20370V3.1 0.616424603110551 6.72762398014089 1.98695291255277e-06 0.000263650129053347
Pp3c5_21722V3.1 -2.06991069382209 1.73999048682435 1.93195425263845e-09 6.43607951291204e-07
Pp3c5_22920V3.1 -2.98438600100187 4.91357122020535 3.77538448264871e-36 2.95565412685361e-32
Pp3c5_27060V3.1 -1.97016332737456 1.9337113796578 3.46035529655324e-11 1.66709270940869e-08
Pp3c6_3710V3.1 -3.95345991925113 1.42223158844789 1.2318010212113e-11 6.22158854503741e-09
Pp3c6_9770V3.1 0.68433407603663 5.76490144347109 1.28614624244107e-06 0.000183071225372919
Pp3c6_10090V3.1 0.976132180921533 5.92873983902284 2.68153381458827e-12 1.71371900824146e-09
Pp3c6_12850V3.1 -1.58557899110476 1.95656768299175 2.64418250042617e-07 4.60014305560254e-05
Pp3c6_15900V3.1 -0.855444267178689 7.73347009633695 5.16180201570354e-10 1.90166858966772e-07
Pp3c6_17399V3.1 -1.28854556250787 6.86771294186087 7.93112609531311e-08 1.63920903119807e-05
Pp3c6_21500V3.1 1.25630304722876 3.117330077351 1.41704302261335e-06 0.000198101349344362
Pp3c6_22490V3.1 -2.31097247036677 0.963603108364187 4.44050803327462e-09 1.36327950060779e-06
Pp3c6_22940V3.1 -0.744880251904915 5.32097374604824 4.8529507131543e-07 7.63848718743818e-05
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