runs/RNA-Seq_analysis/DEGs/DEGs_0.9/cop_D_WT_D/DEGpipe_cop_D vs. WT_D.log

+[1] "set parameters:"
+[1] "Counts file:/mnt/NAS_coruscant_datashare/haasf/madland_RNA-seq_Hoecker/31315.p.sort.counts"
+[1] "Results stored at:/mnt/NAS_coruscant_datashare/haasf/madland_RNA-seq_Hoecker/DEGs_0.9"
+[1] "SampleNames: cop_D" "SampleNames: WT_D" 
+[1] "LenGCTable: /mnt/NAS_coruscant_datashare/haasf/GeneAtlas_RNASeq/DEG_2nd_round/cosmoss_V3.3.release_2016-07-22.IsoformV31.fasta.length_GC_Contig_Daten_for_34840_1nd.csv"
+[1] "myLenPos: 1"
+[1] "myGCPos: 2"
+[1] "rpkm: 0"
+[1] "htseq: 0"
+[1] "pvtedgeR: 0.001"
+[1] "pvtDESeq2: 0.001"
+[1] "pvtNOISeq: 0.9"
+[1] "edgeRDir: edgeR"
+[1] "DESeq2Dir: DESeq2"
+[1] "NOISeqDir: NOISeq"
+R version 4.0.5 (2021-03-31)
+Platform: x86_64-pc-linux-gnu (64-bit)
+Running under: Ubuntu 20.04.2 LTS
+
+Matrix products: default
+BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
+LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
+
+locale:
+ [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=de_DE.UTF-8        LC_COLLATE=en_US.UTF-8    
+ [5] LC_MONETARY=de_DE.UTF-8    LC_MESSAGES=en_US.UTF-8    LC_PAPER=de_DE.UTF-8       LC_NAME=C                 
+ [9] LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C       
+
+attached base packages:
+ [1] splines   parallel  stats4    stats     graphics  grDevices utils     datasets  methods   base     
+
+other attached packages:
+ [1] NOISeq_2.34.0               Matrix_1.3-3                vsn_3.58.0                  gplots_3.1.1               
+ [5] edgeR_3.32.1                limma_3.46.0                pals_1.7                    gridExtra_2.3              
+ [9] sjmisc_2.8.7                magick_2.7.2                pheatmap_1.0.12             RColorBrewer_1.1-2         
+[13] ggplot2_3.3.3               DESeq2_1.30.1               SummarizedExperiment_1.20.0 Biobase_2.50.0             
+[17] MatrixGenerics_1.2.1        matrixStats_0.58.0          GenomicRanges_1.42.0        GenomeInfoDb_1.26.7        
+[21] IRanges_2.24.1              S4Vectors_0.28.1            BiocGenerics_0.36.1        
+
+loaded via a namespace (and not attached):
+ [1] httr_1.4.2             maps_3.3.0             bit64_4.0.5            jsonlite_1.7.2         gtools_3.8.2          
+ [6] BiocManager_1.30.15    affy_1.68.0            blob_1.2.1             GenomeInfoDbData_1.2.4 pillar_1.6.1          
+[11] RSQLite_2.2.7          lattice_0.20-44        glue_1.4.2             digest_0.6.27          XVector_0.30.0        
+[16] colorspace_2.0-1       preprocessCore_1.52.1  htmltools_0.5.1.1      XML_3.99-0.6           pkgconfig_2.0.3       
+[21] genefilter_1.72.1      zlibbioc_1.36.0        purrr_0.3.4            xtable_1.8-4           scales_1.1.1          
+[26] affyio_1.60.0          BiocParallel_1.24.1    tibble_3.1.2           annotate_1.68.0        generics_0.1.0        
+[31] farver_2.1.0           sjlabelled_1.1.8       ellipsis_0.3.2         withr_2.4.2            survival_3.2-11       
+[36] magrittr_2.0.1         crayon_1.4.1           memoise_2.0.0          tools_4.0.5            lifecycle_1.0.0       
+[41] munsell_0.5.0          locfit_1.5-9.4         DelayedArray_0.16.3    AnnotationDbi_1.52.0   compiler_4.0.5        
+[46] caTools_1.18.2         rlang_0.4.11           grid_4.0.5             RCurl_1.98-1.3         dichromat_2.0-0       
+[51] rstudioapi_0.13        htmlwidgets_1.5.3      crosstalk_1.1.1        bitops_1.0-7           labeling_0.4.2        
+[56] gtable_0.3.0           DBI_1.1.1              R6_2.5.0               knitr_1.33             dplyr_1.0.6           
+[61] bit_4.0.4              insight_0.14.0         KernSmooth_2.23-20     Rcpp_1.0.6             vctrs_0.3.8           
+[66] mapproj_1.2.7          geneplotter_1.68.0     tidyselect_1.1.1       xfun_0.23             
+                                      sysname                                       release 
+                                      "Linux"                            "5.4.0-72-generic" 
+                                      version                                      nodename 
+"#80-Ubuntu SMP Mon Apr 12 17:35:00 UTC 2021"                                         "Ben" 
+                                      machine                                         login 
+                                     "x86_64"                                       "haasf" 
+                                         user                                effective_user 
+                                      "haasf"                                       "haasf" 
+[1] "cop_D"   "cop_D.1" "cop_D.2" "WT_D"    "WT_D.1"  "WT_D.2" 
+              cop_D cop_D.1 cop_D.2 WT_D WT_D.1 WT_D.2
+Pp3c1_20V3.1    253     200     237  194    198    298
+Pp3c1_40V3.1    394     340     363  439    523    588
+Pp3c1_60V3.1    574     456     525  622    626    743
+Pp3c1_70V3.1    537     424     479  459    526    643
+Pp3c1_80V3.1     11       5       9    1      1      0
+Pp3c1_100V3.1   777     641     690  576    539    761
+[1] "Raw data row number:  31315"
+[1] "Raw data column number:  6"
+[1] "Filtered data row number:  19404"
+[1] "Filtered data row number:  6"
+[1] "edgeR is running with cop_D vs. WT_D"
+[1] "DESeq2 is running with cop_D vs. WT_D"
+[1] "NOISeq is running with cop_D vs. WT_D"
+Filtering out low count features...
+18714 features are to be kept for differential expression analysis with filtering method 1
+[1] "GC content bias detection is to be computed for:"
+[1] "cop_D"   "cop_D.1" "cop_D.2" "WT_D"    "WT_D.1"  "WT_D.2" 
+[1] "cop_D"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-95.413 -23.503  -1.621  15.722 145.521 
+
+Coefficients: (3 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)   232.18      41.50   5.595 2.77e-07 ***
+bx1          -141.34      58.69  -2.408  0.01824 *  
+bx2               NA         NA      NA       NA    
+bx3               NA         NA      NA       NA    
+bx4          2668.79    5991.32   0.445  0.65716    
+bx5          -290.60     252.90  -1.149  0.25384    
+bx6           -32.48      63.47  -0.512  0.61016    
+bx7           134.19      47.73   2.812  0.00615 ** 
+bx8           207.58      48.19   4.308 4.50e-05 ***
+bx9           159.40      60.58   2.631  0.01013 *  
+bx10          -30.87     177.42  -0.174  0.86231    
+bx11         -165.26     962.84  -0.172  0.86414    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 41.5 on 83 degrees of freedom
+Multiple R-squared:  0.7465,	Adjusted R-squared:  0.719 
+F-statistic: 27.16 on 9 and 83 DF,  p-value: < 2.2e-16
+
+[1] "cop_D.1"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-85.666 -19.643  -0.578  14.431 120.531 
+
+Coefficients: (3 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)   232.97      35.59   6.547  4.6e-09 ***
+bx1          -153.45      50.33  -3.049 0.003081 ** 
+bx2               NA         NA      NA       NA    
+bx3               NA         NA      NA       NA    
+bx4          1491.09    5137.74   0.290 0.772370    
+bx5          -247.10     216.87  -1.139 0.257824    
+bx6           -58.18      54.43  -1.069 0.288222    
+bx7            82.34      40.93   2.012 0.047480 *  
+bx8           146.49      41.32   3.545 0.000648 ***
+bx9            97.03      51.95   1.868 0.065304 .  
+bx10          -20.72     152.14  -0.136 0.892005    
+bx11         -257.53     825.67  -0.312 0.755894    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 35.59 on 83 degrees of freedom
+Multiple R-squared:  0.7337,	Adjusted R-squared:  0.7049 
+F-statistic: 25.41 on 9 and 83 DF,  p-value: < 2.2e-16
+
+[1] "cop_D.2"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-91.150 -20.641  -1.976  14.283 132.297 
+
+Coefficients: (3 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)   239.73      38.80   6.179 2.29e-08 ***
+bx1          -157.48      54.87  -2.870 0.005202 ** 
+bx2               NA         NA      NA       NA    
+bx3               NA         NA      NA       NA    
+bx4          1932.32    5601.12   0.345 0.730976    
+bx5          -271.12     236.43  -1.147 0.254785    
+bx6           -58.12      59.34  -0.979 0.330233    
+bx7            93.56      44.62   2.097 0.039039 *  
+bx8           177.95      45.05   3.950 0.000163 ***
+bx9           132.00      56.63   2.331 0.022181 *  
+bx10          -45.41     165.86  -0.274 0.784915    
+bx11          -49.62     900.13  -0.055 0.956175    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 38.8 on 83 degrees of freedom
+Multiple R-squared:  0.7549,	Adjusted R-squared:  0.7283 
+F-statistic:  28.4 on 9 and 83 DF,  p-value: < 2.2e-16
+
+[1] "WT_D"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+   Min     1Q Median     3Q    Max 
+-90.77 -23.52   0.00  17.64 121.24 
+
+Coefficients: (3 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)   248.60      39.70   6.263 1.59e-08 ***
+bx1          -165.66      56.14  -2.951 0.004116 ** 
+bx2               NA         NA      NA       NA    
+bx3               NA         NA      NA       NA    
+bx4          1653.28    5730.87   0.288 0.773693    
+bx5          -272.40     241.91  -1.126 0.263394    
+bx6           -48.93      60.71  -0.806 0.422623    
+bx7           124.95      45.65   2.737 0.007581 ** 
+bx8           172.45      46.09   3.741 0.000336 ***
+bx9            75.90      57.94   1.310 0.193838    
+bx10           42.38     169.70   0.250 0.803414    
+bx11         -674.17     920.98  -0.732 0.466226    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 39.7 on 83 degrees of freedom
+Multiple R-squared:  0.7257,	Adjusted R-squared:  0.696 
+F-statistic:  24.4 on 9 and 83 DF,  p-value: < 2.2e-16
+
+[1] "WT_D.1"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+     Min       1Q   Median       3Q      Max 
+-100.065  -26.520   -0.435   20.730  130.421 
+
+Coefficients: (3 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)   273.52      43.47   6.292  1.4e-08 ***
+bx1          -180.87      61.47  -2.942  0.00422 ** 
+bx2               NA         NA      NA       NA    
+bx3               NA         NA      NA       NA    
+bx4          1478.02    6275.62   0.236  0.81439    
+bx5          -285.09     264.90  -1.076  0.28495    
+bx6           -46.23      66.48  -0.695  0.48882    
+bx7           136.92      49.99   2.739  0.00754 ** 
+bx8           187.40      50.47   3.713  0.00037 ***
+bx9            76.24      63.45   1.202  0.23296    
+bx10           56.11     185.84   0.302  0.76344    
+bx11         -772.91    1008.53  -0.766  0.44563    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 43.47 on 83 degrees of freedom
+Multiple R-squared:  0.7158,	Adjusted R-squared:  0.685 
+F-statistic: 23.23 on 9 and 83 DF,  p-value: < 2.2e-16
+
+[1] "WT_D.2"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-115.51  -32.20    1.16   22.57  158.14 
+
+Coefficients: (3 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)  280.193     51.514   5.439 5.29e-07 ***
+bx1         -179.286     72.852  -2.461 0.015929 *  
+bx2               NA         NA      NA       NA    
+bx3               NA         NA      NA       NA    
+bx4         1906.870   7437.141   0.256 0.798278    
+bx5         -305.184    313.932  -0.972 0.333808    
+bx6           -7.132     78.790  -0.091 0.928096    
+bx7          210.399     59.243   3.551 0.000635 ***
+bx8          278.571     59.817   4.657 1.21e-05 ***
+bx9          145.720     75.194   1.938 0.056032 .  
+bx10          41.996    220.230   0.191 0.849235    
+bx11        -718.645   1195.193  -0.601 0.549293    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 51.51 on 83 degrees of freedom
+Multiple R-squared:  0.7388,	Adjusted R-squared:  0.7105 
+F-statistic: 26.09 on 9 and 83 DF,  p-value: < 2.2e-16
+
+[1] "GC content bias detection is to be computed for:"
+[1] "cop_D" "WT_D" 
+[1] "cop_D"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-11.892  -2.732   0.000   1.887  17.394 
+
+Coefficients: (3 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)   30.807      5.052   6.098 3.26e-08 ***
+bx1          -19.790      7.145  -2.770 0.006918 ** 
+bx2               NA         NA      NA       NA    
+bx3               NA         NA      NA       NA    
+bx4          260.461    729.404   0.357 0.721933    
+bx5          -35.144     30.789  -1.141 0.256969    
+bx6           -6.576      7.727  -0.851 0.397236    
+bx7           13.453      5.810   2.315 0.023062 *  
+bx8           23.050      5.867   3.929 0.000176 ***
+bx9           16.973      7.375   2.301 0.023872 *  
+bx10          -4.507     21.599  -0.209 0.835216    
+bx11         -19.978    117.220  -0.170 0.865086    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 5.052 on 83 degrees of freedom
+Multiple R-squared:  0.7448,	Adjusted R-squared:  0.7171 
+F-statistic: 26.92 on 9 and 83 DF,  p-value: < 2.2e-16
+
+[1] "WT_D"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-10.949  -3.091   0.000   2.156  14.544 
+
+Coefficients: (3 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)   29.069      4.840   6.006 4.85e-08 ***
+bx1          -19.098      6.845  -2.790  0.00654 ** 
+bx2               NA         NA      NA       NA    
+bx3               NA         NA      NA       NA    
+bx4          185.046    698.820   0.265  0.79182    
+bx5          -31.420     29.498  -1.065  0.28989    
+bx6           -3.919      7.403  -0.529  0.59793    
+bx7           16.718      5.567   3.003  0.00353 ** 
+bx8           22.691      5.621   4.037  0.00012 ***
+bx9           10.476      7.065   1.483  0.14195    
+bx10           5.057     20.694   0.244  0.80756    
+bx11         -78.547    112.305  -0.699  0.48625    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 4.84 on 83 degrees of freedom
+Multiple R-squared:  0.727,	Adjusted R-squared:  0.6974 
+F-statistic: 24.56 on 9 and 83 DF,  p-value: < 2.2e-16
+
+[1] "cop_D"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-11.892  -2.732   0.000   1.887  17.394 
+
+Coefficients: (3 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)   30.807      5.052   6.098 3.26e-08 ***
+bx1          -19.790      7.145  -2.770 0.006918 ** 
+bx2               NA         NA      NA       NA    
+bx3               NA         NA      NA       NA    
+bx4          260.461    729.404   0.357 0.721933    
+bx5          -35.144     30.789  -1.141 0.256969    
+bx6           -6.576      7.727  -0.851 0.397236    
+bx7           13.453      5.810   2.315 0.023062 *  
+bx8           23.050      5.867   3.929 0.000176 ***
+bx9           16.973      7.375   2.301 0.023872 *  
+bx10          -4.507     21.599  -0.209 0.835216    
+bx11         -19.978    117.220  -0.170 0.865086    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 5.052 on 83 degrees of freedom
+Multiple R-squared:  0.7448,	Adjusted R-squared:  0.7171 
+F-statistic: 26.92 on 9 and 83 DF,  p-value: < 2.2e-16
+
+[1] "WT_D"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-10.949  -3.091   0.000   2.156  14.544 
+
+Coefficients: (3 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)   29.069      4.840   6.006 4.85e-08 ***
+bx1          -19.098      6.845  -2.790  0.00654 ** 
+bx2               NA         NA      NA       NA    
+bx3               NA         NA      NA       NA    
+bx4          185.046    698.820   0.265  0.79182    
+bx5          -31.420     29.498  -1.065  0.28989    
+bx6           -3.919      7.403  -0.529  0.59793    
+bx7           16.718      5.567   3.003  0.00353 ** 
+bx8           22.691      5.621   4.037  0.00012 ***
+bx9           10.476      7.065   1.483  0.14195    
+bx10           5.057     20.694   0.244  0.80756    
+bx11         -78.547    112.305  -0.699  0.48625    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 4.84 on 83 degrees of freedom
+Multiple R-squared:  0.727,	Adjusted R-squared:  0.6974 
+F-statistic: 24.56 on 9 and 83 DF,  p-value: < 2.2e-16
+
+[1] "Length bias detection information is to be computed for:"
+[1] "cop_D"   "cop_D.1" "cop_D.2" "WT_D"    "WT_D.1"  "WT_D.2" 
+[1] "cop_D"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-64.907 -25.765  -0.942  19.708  88.162 
+
+Coefficients: (1 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)  1156.87      34.57  33.467  < 2e-16 ***
+bx1         -1114.47      48.25 -23.097  < 2e-16 ***
+bx2         -1057.19      50.32 -21.010  < 2e-16 ***
+bx3          -820.74      43.47 -18.881  < 2e-16 ***
+bx4          -923.27      39.21 -23.548  < 2e-16 ***
+bx5          -758.04      39.25 -19.315  < 2e-16 ***
+bx6          -782.40      41.52 -18.846  < 2e-16 ***
+bx7          -620.14      47.28 -13.116  < 2e-16 ***
+bx8          -655.07      64.00 -10.236 2.93e-16 ***
+bx9          -357.49     133.53  -2.677  0.00899 ** 
+bx10        -1723.92    1723.10  -1.000  0.32006    
+bx11        27297.83   28053.74   0.973  0.33342    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 34.57 on 81 degrees of freedom
+Multiple R-squared:  0.949,	Adjusted R-squared:  0.9421 
+F-statistic:   137 on 11 and 81 DF,  p-value: < 2.2e-16
+
+[1] "cop_D.1"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-58.620 -22.593   0.177  17.461  78.806 
+
+Coefficients: (1 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)   888.82      30.96  28.713  < 2e-16 ***
+bx1          -849.58      43.21 -19.662  < 2e-16 ***
+bx2          -786.28      45.06 -17.450  < 2e-16 ***
+bx3          -576.27      38.93 -14.804  < 2e-16 ***
+bx4          -681.83      35.11 -19.419  < 2e-16 ***
+bx5          -544.52      35.15 -15.493  < 2e-16 ***
+bx6          -578.60      37.18 -15.563  < 2e-16 ***
+bx7          -433.84      42.34 -10.246  2.8e-16 ***
+bx8          -488.77      57.31  -8.528  6.8e-13 ***
+bx9          -228.16     119.58  -1.908   0.0599 .  
+bx10        -1501.76    1543.05  -0.973   0.3333    
+bx11        24034.51   25122.45   0.957   0.3416    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 30.96 on 81 degrees of freedom
+Multiple R-squared:  0.9281,	Adjusted R-squared:  0.9183 
+F-statistic: 95.04 on 11 and 81 DF,  p-value: < 2.2e-16
+
+[1] "cop_D.2"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-63.868 -24.699  -0.262  18.247  85.733 
+
+Coefficients: (1 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)  1027.67      32.72  31.404  < 2e-16 ***
+bx1          -988.94      45.68 -21.650  < 2e-16 ***
+bx2          -926.96      47.63 -19.460  < 2e-16 ***
+bx3          -699.23      41.15 -16.992  < 2e-16 ***
+bx4          -813.19      37.12 -21.909  < 2e-16 ***
+bx5          -656.95      37.15 -17.682  < 2e-16 ***
+bx6          -677.94      39.30 -17.250  < 2e-16 ***
+bx7          -541.97      44.76 -12.108  < 2e-16 ***
+bx8          -560.65      60.59  -9.254  2.5e-14 ***
+bx9          -321.35     126.41  -2.542   0.0129 *  
+bx10        -1168.77    1631.20  -0.717   0.4757    
+bx11        17306.82   26557.60   0.652   0.5165    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 32.72 on 81 degrees of freedom
+Multiple R-squared:  0.9412,	Adjusted R-squared:  0.9332 
+F-statistic: 117.8 on 11 and 81 DF,  p-value: < 2.2e-16
+
+[1] "WT_D"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+   Min     1Q Median     3Q    Max 
+-78.66 -21.29  -4.77  22.49  80.39 
+
+Coefficients: (1 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)  1106.18      36.51  30.296  < 2e-16 ***
+bx1         -1063.63      50.97 -20.869  < 2e-16 ***
+bx2          -982.67      53.15 -18.489  < 2e-16 ***
+bx3          -790.24      45.91 -17.212  < 2e-16 ***
+bx4          -874.52      41.41 -21.117  < 2e-16 ***
+bx5          -723.44      41.45 -17.452  < 2e-16 ***
+bx6          -734.82      43.85 -16.757  < 2e-16 ***
+bx7          -572.61      49.94 -11.465  < 2e-16 ***
+bx8          -622.72      67.60  -9.212 3.03e-14 ***
+bx9          -261.28     141.04  -1.853   0.0676 .  
+bx10        -2108.57    1820.03  -1.159   0.2501    
+bx11        33384.71   29631.91   1.127   0.2632    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 36.51 on 81 degrees of freedom
+Multiple R-squared:  0.9414,	Adjusted R-squared:  0.9334 
+F-statistic: 118.2 on 11 and 81 DF,  p-value: < 2.2e-16
+
+[1] "WT_D.1"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-85.046 -24.450  -7.112  25.672  93.226 
+
+Coefficients: (1 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)  1169.67      40.67  28.763  < 2e-16 ***
+bx1         -1120.70      56.76 -19.743  < 2e-16 ***
+bx2         -1031.03      59.19 -17.418  < 2e-16 ***
+bx3          -808.33      51.14 -15.807  < 2e-16 ***
+bx4          -913.68      46.12 -19.809  < 2e-16 ***
+bx5          -750.81      46.17 -16.262  < 2e-16 ***
+bx6          -763.46      48.84 -15.632  < 2e-16 ***
+bx7          -593.85      55.62 -10.676  < 2e-16 ***
+bx8          -645.02      75.29  -8.567  5.7e-13 ***
+bx9          -271.03     157.09  -1.725   0.0883 .  
+bx10        -2035.95    2027.05  -1.004   0.3182    
+bx11        32291.41   33002.37   0.978   0.3308    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 40.67 on 81 degrees of freedom
+Multiple R-squared:  0.9342,	Adjusted R-squared:  0.9253 
+F-statistic: 104.6 on 11 and 81 DF,  p-value: < 2.2e-16
+
+[1] "WT_D.2"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-103.39  -30.65   -4.10   25.80  113.80 
+
+Coefficients: (1 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)  1346.97      48.69  27.665  < 2e-16 ***
+bx1         -1293.54      67.96 -19.033  < 2e-16 ***
+bx2         -1192.83      70.87 -16.831  < 2e-16 ***
+bx3          -905.40      61.22 -14.788  < 2e-16 ***
+bx4         -1038.90      55.22 -18.813  < 2e-16 ***
+bx5          -838.23      55.28 -15.164  < 2e-16 ***
+bx6          -860.80      58.47 -14.721  < 2e-16 ***
+bx7          -664.19      66.60  -9.973 9.58e-16 ***
+bx8          -719.32      90.14  -7.980 8.23e-12 ***
+bx9          -307.45     188.08  -1.635    0.106    
+bx10        -2180.18    2426.97  -0.898    0.372    
+bx11        34370.37   39513.49   0.870    0.387    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 48.69 on 81 degrees of freedom
+Multiple R-squared:  0.9296,	Adjusted R-squared:  0.9201 
+F-statistic: 97.28 on 11 and 81 DF,  p-value: < 2.2e-16
+
+[1] "Length bias detection information is to be computed for:"
+[1] "cop_D" "WT_D" 
+[1] "cop_D"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-8.1317 -3.1672 -0.0633  2.2781 11.0066 
+
+Coefficients: (1 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)  133.556      4.272  31.263  < 2e-16 ***
+bx1         -128.295      5.963 -21.514  < 2e-16 ***
+bx2         -120.323      6.218 -19.349  < 2e-16 ***
+bx3          -90.870      5.372 -16.916  < 2e-16 ***
+bx4         -105.023      4.845 -21.675  < 2e-16 ***
+bx5          -84.996      4.850 -17.524  < 2e-16 ***
+bx6          -88.530      5.131 -17.255  < 2e-16 ***
+bx7          -69.199      5.843 -11.842  < 2e-16 ***
+bx8          -74.034      7.909  -9.360 1.54e-14 ***
+bx9          -39.036     16.502  -2.365   0.0204 *  
+bx10        -192.720    212.948  -0.905   0.3681    
+bx11        3009.280   3467.004   0.868   0.3880    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 4.272 on 81 degrees of freedom
+Multiple R-squared:  0.9406,	Adjusted R-squared:  0.9325 
+F-statistic: 116.5 on 11 and 81 DF,  p-value: < 2.2e-16
+
+[1] "WT_D"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-9.5823 -2.7753 -0.5364  2.5369 10.2534 
+
+Coefficients: (1 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)  130.628      4.517  28.921  < 2e-16 ***
+bx1         -125.406      6.305 -19.891  < 2e-16 ***
+bx2         -115.616      6.575 -17.585  < 2e-16 ***
+bx3          -90.543      5.680 -15.941  < 2e-16 ***
+bx4         -102.034      5.123 -19.917  < 2e-16 ***
+bx5          -83.571      5.128 -16.297  < 2e-16 ***
+bx6          -85.215      5.424 -15.709  < 2e-16 ***
+bx7          -66.158      6.178 -10.708  < 2e-16 ***
+bx8          -71.839      8.362  -8.591 5.12e-13 ***
+bx9          -30.154     17.448  -1.728   0.0878 .  
+bx10        -230.320    225.144  -1.023   0.3094    
+bx11        3637.700   3665.570   0.992   0.3240    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 4.517 on 81 degrees of freedom
+Multiple R-squared:  0.9354,	Adjusted R-squared:  0.9266 
+F-statistic: 106.6 on 11 and 81 DF,  p-value: < 2.2e-16
+
+[1] "cop_D"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-8.1317 -3.1672 -0.0633  2.2781 11.0066 
+
+Coefficients: (1 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)  133.556      4.272  31.263  < 2e-16 ***
+bx1         -128.295      5.963 -21.514  < 2e-16 ***
+bx2         -120.323      6.218 -19.349  < 2e-16 ***
+bx3          -90.870      5.372 -16.916  < 2e-16 ***
+bx4         -105.023      4.845 -21.675  < 2e-16 ***
+bx5          -84.996      4.850 -17.524  < 2e-16 ***
+bx6          -88.530      5.131 -17.255  < 2e-16 ***
+bx7          -69.199      5.843 -11.842  < 2e-16 ***
+bx8          -74.034      7.909  -9.360 1.54e-14 ***
+bx9          -39.036     16.502  -2.365   0.0204 *  
+bx10        -192.720    212.948  -0.905   0.3681    
+bx11        3009.280   3467.004   0.868   0.3880    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 4.272 on 81 degrees of freedom
+Multiple R-squared:  0.9406,	Adjusted R-squared:  0.9325 
+F-statistic: 116.5 on 11 and 81 DF,  p-value: < 2.2e-16
+
+[1] "WT_D"
+
+Call:
+lm(formula = datos[, i] ~ bx)
+
+Residuals:
+    Min      1Q  Median      3Q     Max 
+-9.5823 -2.7753 -0.5364  2.5369 10.2534 
+
+Coefficients: (1 not defined because of singularities)
+            Estimate Std. Error t value Pr(>|t|)    
+(Intercept)  130.628      4.517  28.921  < 2e-16 ***
+bx1         -125.406      6.305 -19.891  < 2e-16 ***
+bx2         -115.616      6.575 -17.585  < 2e-16 ***
+bx3          -90.543      5.680 -15.941  < 2e-16 ***
+bx4         -102.034      5.123 -19.917  < 2e-16 ***
+bx5          -83.571      5.128 -16.297  < 2e-16 ***
+bx6          -85.215      5.424 -15.709  < 2e-16 ***
+bx7          -66.158      6.178 -10.708  < 2e-16 ***
+bx8          -71.839      8.362  -8.591 5.12e-13 ***
+bx9          -30.154     17.448  -1.728   0.0878 .  
+bx10        -230.320    225.144  -1.023   0.3094    
+bx11        3637.700   3665.570   0.992   0.3240    
+bx12              NA         NA      NA       NA    
+---
+Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
+
+Residual standard error: 4.517 on 81 degrees of freedom
+Multiple R-squared:  0.9354,	Adjusted R-squared:  0.9266 
+F-statistic: 106.6 on 11 and 81 DF,  p-value: < 2.2e-16
+
+[1] "Reference sample is: cop_D"
+[1] "Confidence intervals for median of M:"
+        0.5%                   99.5%                 Diagnostic Test
+cop_D.1 "-0.0325641251936399"  "-0.0214671880382169" "FAILED"       
+cop_D.2 "0.000119291324295735" "0.00894831690008791" "FAILED"       
+WT_D    "-0.0440663970825742"  "-0.0267326069435315" "FAILED"       
+WT_D.1  "-0.0530137708120123"  "-0.0346729574179708" "FAILED"       
+WT_D.2  "-0.029173144338629"   "-0.0123386881093951" "FAILED"       
+[1] "Diagnostic test: FAILED. Normalization is required to correct this bias."
+[1] "WARNING: Your experiment has biological replicates. You should consider using NOISeqBIO instead of NOISeq."
+[1] "Computing (M,D) values..."
+[1] "Computing probability of differential expression..."
+[1] "WARNING: Your experiment has biological replicates. You should consider using NOISeqBIO instead of NOISeq."
+[1] "Computing (M,D) values..."
+[1] "Computing probability of differential expression..."
+[1] "WARNING: Your experiment has biological replicates. You should consider using NOISeqBIO instead of NOISeq."
+[1] "Computing (M,D) values..."
+[1] "Computing probability of differential expression..."
+Computing Z values...
+Filtering out low count features...
+17866 features are to be kept for differential expression analysis with filtering method 1
+...k-means clustering done
+Size of 15 clusters:
+ [1]  102   48    8   34 6972  156 2787    2  727 4903  410   14  220   57 1426
+Resampling cluster...[1] 1
+[1] 2
+[1] 3
+[1] 4
+[1] 5
+Size of 15 subclusters of cluster: 5
+ [1] 1099  769  575  479  689  203  341  476  592  268  729  407   97   71  177
+[1] 6
+[1] 7
+Size of 15 subclusters of cluster: 7
+ [1]  41 366 131  23 140  36 284  64 325 268 406  21 178 261 243
+[1] 8
+[1] 9
+[1] 10
+Size of 15 subclusters of cluster: 10
+ [1] 785  42 750  99 176 100 216 235 654 317 542 273  23 267 424
+[1] 11
+[1] 12
+[1] 13
+[1] 14
+[1] 15
+Size of 15 subclusters of cluster: 15
+ [1] 213  22  53   3 113  76  88  11 152  96  23 243  96 196  41
+Computing Z for noise...
+Computing probability of differential expression...
+p0 = 0.213926233783839
+Probability
+   Min. 1st Qu.  Median    Mean 3rd Qu.    Max.    NA's 
+ 0.0000  0.7295  0.8969  0.7795  0.9470  1.0000     848 
+Computing Z values...
+Filtering out low count features...
+18714 features are to be kept for differential expression analysis with filtering method 1
+...k-means clustering done
+Size of 15 clusters:
+ [1]   33  106  567    2  197   14  878 3054  365    8 6730 4911   73   42 1734
+Resampling cluster...[1] 1
+[1] 2
+[1] 3
+[1] 4
+[1] 5
+[1] 6
+[1] 7
+[1] 8
+Size of 15 subclusters of cluster: 8
+ [1] 248 229 273 355 161 103  33  17 480 150 327  34  91  36 517
+[1] 9
+[1] 10
+[1] 11
+Size of 15 subclusters of cluster: 11
+ [1]  548  323  428  400   82 1164  106  542  218  159   60  424  720  682  874
+[1] 12
+Size of 15 subclusters of cluster: 12
+ [1] 187 619 695  75  36 138 845  80 244  36 590 228 405 481 252
+[1] 13
+[1] 14
+[1] 15
+Size of 15 subclusters of cluster: 15
+ [1]   3 144 234 143 298 151  12 185 105  59  37  66  70  23 204
+Computing Z for noise...
+Computing probability of differential expression...
+p0 = 0.203125940200677
+Probability
+   Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
+ 0.0000  0.7571  0.9058  0.7917  0.9541  1.0000 
+Computing Z values...
+Filtering out low count features...
+18714 features are to be kept for differential expression analysis with filtering method 1
+...k-means clustering done
+Size of 15 clusters:
+ [1]   75   41 2813 1588 7903   26   93  834    4 4704   16  204  375   34    4
+Resampling cluster...[1] 1
+[1] 2
+[1] 3
+Size of 15 subclusters of cluster: 3
+ [1] 157 303 144 356 105  25 270  20 243  89 120 188 292 467  34
+[1] 4
+Size of 15 subclusters of cluster: 4
+ [1] 109  12 193 135 152  74 207 179  59  59 193  44  26  13 133
+[1] 5
+Size of 15 subclusters of cluster: 5
+ [1]  472  596  167 1720  587  139  717  272  303   92  920  606  805  369  138
+[1] 6
+[1] 7
+[1] 8
+[1] 9
+[1] 10
+Size of 15 subclusters of cluster: 10
+ [1]  99  52 324  21  98 144 608 556 413 644  63 273 389 655 365
+[1] 11
+[1] 12
+[1] 13
+[1] 14
+[1] 15
+Computing Z for noise...
+Computing probability of differential expression...
+p0 = 0.179661680392587
+Probability
+   Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
+ 0.0000  0.7993  0.9534  0.8237  0.9778  1.0000 
+[1] "1466 differentially expressed features"
+[1] "1175 differentially expressed features (up in first condition)"
+[1] "291 differentially expressed features (down in first condition)"
+[1] "1005 differentially expressed features"
+[1] "559 differentially expressed features (up in first condition)"
+[1] "446 differentially expressed features (down in first condition)"
+[1] "1497 differentially expressed features"
+[1] "3109 differentially expressed features"
+[1] "895 differentially expressed features"
+[1] "2170 differentially expressed features"
+[1] "1505 differentially expressed features"
+[1] "3176 differentially expressed features"
+[1] "8728 differentially expressed features"
+[1] "1466 differentially expressed features"
+[1] "12188 differentially expressed features"
+[1] "1005 differentially expressed features"
+[1] "1497 differentially expressed features"
+[1] "895 differentially expressed features"
+[1] "DEGs edgeR"
+[1] 4524
+[1] "DEGs deseq2"
+[1] 3324
+[1] "DEGs noiseq"
+[1] 1497
+[1] "DEGs noiseqbio"
+[1] 1466
+[1] "DEGs intersection without direction check (four methods)"
+[1] 933
+  [1] "Pp3c1_2210V3.1"   "Pp3c1_2420V3.1"   "Pp3c1_3040V3.1"   "Pp3c1_3300V3.1"   "Pp3c1_3610V3.1"   "Pp3c1_5300V3.1"  
+  [7] "Pp3c1_6272V3.1"   "Pp3c1_6640V3.1"   "Pp3c1_8280V3.1"   "Pp3c1_8490V3.1"   "Pp3c1_9320V3.1"   "Pp3c1_9600V3.1"  
+ [13] "Pp3c1_10970V3.1"  "Pp3c1_11030V3.1"  "Pp3c1_13170V3.1"  "Pp3c1_13830V3.1"  "Pp3c1_13930V3.1"  "Pp3c1_14230V3.1" 
+ [19] "Pp3c1_14380V3.1"  "Pp3c1_17080V3.1"  "Pp3c1_18260V3.1"  "Pp3c1_19060V3.1"  "Pp3c1_19190V3.1"  "Pp3c1_19210V3.1" 
+ [25] "Pp3c1_20700V3.1"  "Pp3c1_20960V3.1"  "Pp3c1_21400V3.1"  "Pp3c1_21540V3.1"  "Pp3c1_22120V3.1"  "Pp3c1_22560V3.1" 
+ [31] "Pp3c1_22640V3.1"  "Pp3c1_23000V3.1"  "Pp3c1_23300V3.1"  "Pp3c1_24350V3.1"  "Pp3c1_25080V3.1"  "Pp3c1_26720V3.1" 
+ [37] "Pp3c1_27270V3.1"  "Pp3c1_27990V3.1"  "Pp3c1_28090V3.1"  "Pp3c1_28680V3.1"  "Pp3c1_29300V3.1"  "Pp3c1_29700V3.1" 
+ [43] "Pp3c1_30410V3.1"  "Pp3c1_30570V3.1"  "Pp3c1_30790V3.1"  "Pp3c1_31540V3.1"  "Pp3c1_31680V3.1"  "Pp3c1_31910V3.1" 
+ [49] "Pp3c1_32200V3.1"  "Pp3c1_33460V3.1"  "Pp3c1_34020V3.1"  "Pp3c1_34210V3.1"  "Pp3c1_34240V3.1"  "Pp3c1_34950V3.1" 
+ [55] "Pp3c1_35321V3.1"  "Pp3c1_35330V3.1"  "Pp3c1_35610V3.1"  "Pp3c1_37550V3.1"  "Pp3c1_38210V3.1"  "Pp3c1_39540V3.1" 
+ [61] "Pp3c1_39760V3.1"  "Pp3c1_39780V3.1"  "Pp3c1_40040V3.1"  "Pp3c1_40570V3.1"  "Pp3c1_41090V3.1"  "Pp3c2_1570V3.1"  
+ [67] "Pp3c2_2070V3.1"   "Pp3c2_2220V3.1"   "Pp3c2_2310V3.1"   "Pp3c2_2520V3.1"   "Pp3c2_3800V3.1"   "Pp3c2_4100V3.1"  
+ [73] "Pp3c2_4250V3.1"   "Pp3c2_4520V3.1"   "Pp3c2_6690V3.1"   "Pp3c2_6710V3.1"   "Pp3c2_7940V3.1"   "Pp3c2_8570V3.1"  
+ [79] "Pp3c2_12080V3.1"  "Pp3c2_14090V3.1"  "Pp3c2_15140V3.1"  "Pp3c2_17110V3.1"  "Pp3c2_17290V3.1"  "Pp3c2_17700V3.1" 
+ [85] "Pp3c2_18570V3.1"  "Pp3c2_18870V3.1"  "Pp3c2_19570V3.1"  "Pp3c2_19700V3.1"  "Pp3c2_20840V3.1"  "Pp3c2_22020V3.1" 
+ [91] "Pp3c2_24500V3.1"  "Pp3c2_24620V3.1"  "Pp3c2_25890V3.1"  "Pp3c2_25930V3.1"  "Pp3c2_26720V3.1"  "Pp3c2_29570V3.1" 
+ [97] "Pp3c2_31200V3.1"  "Pp3c2_31920V3.1"  "Pp3c2_31970V3.1"  "Pp3c2_32160V3.1"  "Pp3c2_32640V3.1"  "Pp3c2_32770V3.1" 
+[103] "Pp3c2_34270V3.1"  "Pp3c2_35010V3.1"  "Pp3c2_35740V3.1"  "Pp3c2_35930V3.1"  "Pp3c2_36220V3.1"  "Pp3c2_37670V3.1" 
+[109] "Pp3c2_37900V3.1"  "Pp3c3_240V3.1"    "Pp3c3_810V3.1"    "Pp3c3_950V3.1"    "Pp3c3_1090V3.1"   "Pp3c3_2620V3.1"  
+[115] "Pp3c3_4100V3.1"   "Pp3c3_5420V3.1"   "Pp3c3_5570V3.1"   "Pp3c3_5620V3.1"   "Pp3c3_5720V3.1"   "Pp3c3_5810V3.1"  
+[121] "Pp3c3_9440V3.1"   "Pp3c3_10350V3.1"  "Pp3c3_10560V3.1"  "Pp3c3_10800V3.1"  "Pp3c3_12510V3.1"  "Pp3c3_12560V3.1" 
+[127] "Pp3c3_14080V3.1"  "Pp3c3_14700V3.1"  "Pp3c3_18750V3.1"  "Pp3c3_19490V3.1"  "Pp3c3_20140V3.1"  "Pp3c3_21060V3.1" 
+[133] "Pp3c3_21910V3.1"  "Pp3c3_22090V3.1"  "Pp3c3_22990V3.1"  "Pp3c3_23240V3.1"  "Pp3c3_23880V3.1"  "Pp3c3_26890V3.1" 
+[139] "Pp3c3_27280V3.1"  "Pp3c3_28310V3.1"  "Pp3c3_28810V3.1"  "Pp3c3_29330V3.1"  "Pp3c3_30210V3.1"  "Pp3c3_30330V3.1" 
+[145] "Pp3c3_32210V3.1"  "Pp3c3_32790V3.1"  "Pp3c3_34460V3.1"  "Pp3c3_34790V3.1"  "Pp3c3_35180V3.1"  "Pp3c3_35270V3.1" 
+[151] "Pp3c3_35850V3.1"  "Pp3c3_37540V3.1"  "Pp3c4_1240V3.1"   "Pp3c4_3170V3.1"   "Pp3c4_3190V3.1"   "Pp3c4_3490V3.1"  
+[157] "Pp3c4_3600V3.1"   "Pp3c4_3720V3.1"   "Pp3c4_3930V3.1"   "Pp3c4_4820V3.1"   "Pp3c4_5090V3.1"   "Pp3c4_5170V3.1"  
+[163] "Pp3c4_5680V3.1"   "Pp3c4_5690V3.1"   "Pp3c4_6260V3.1"   "Pp3c4_6500V3.1"   "Pp3c4_6620V3.1"   "Pp3c4_6830V3.1"  
+[169] "Pp3c4_7960V3.1"   "Pp3c4_8159V3.1"   "Pp3c4_8171V3.1"   "Pp3c4_8330V3.1"   "Pp3c4_8470V3.1"   "Pp3c4_10695V3.1" 
+[175] "Pp3c4_11800V3.1"  "Pp3c4_14550V3.1"  "Pp3c4_15470V3.1"  "Pp3c4_16570V3.1"  "Pp3c4_16840V3.1"  "Pp3c4_17170V3.1" 
+[181] "Pp3c4_17240V3.1"  "Pp3c4_17920V3.1"  "Pp3c4_19720V3.1"  "Pp3c4_20080V3.1"  "Pp3c4_20230V3.1"  "Pp3c4_20750V3.1" 
+[187] "Pp3c4_22140V3.1"  "Pp3c4_22490V3.1"  "Pp3c4_22510V3.1"  "Pp3c4_23110V3.1"  "Pp3c4_23170V3.1"  "Pp3c4_25090V3.1" 
+[193] "Pp3c4_26000V3.1"  "Pp3c4_26620V3.1"  "Pp3c4_26900V3.1"  "Pp3c4_26990V3.1"  "Pp3c4_28370V3.1"  "Pp3c4_30520V3.1" 
+[199] "Pp3c4_30860V3.1"  "Pp3c4_30870V3.1"  "Pp3c4_30950V3.1"  "Pp3c4_31590V3.1"  "Pp3c4_31920V3.1"  "Pp3c4_32350V3.1" 
+[205] "Pp3c5_570V3.1"    "Pp3c5_690V3.1"    "Pp3c5_880V3.1"    "Pp3c5_889V3.1"    "Pp3c5_960V3.1"    "Pp3c5_1370V3.1"  
+[211] "Pp3c5_2900V3.1"   "Pp3c5_3300V3.1"   "Pp3c5_3660V3.1"   "Pp3c5_4110V3.1"   "Pp3c5_4140V3.1"   "Pp3c5_4200V3.1"  
+[217] "Pp3c5_4230V3.1"   "Pp3c5_4350V3.1"   "Pp3c5_4460V3.1"   "Pp3c5_4840V3.1"   "Pp3c5_5090V3.1"   "Pp3c5_5150V3.1"  
+[223] "Pp3c5_5590V3.1"   "Pp3c5_6270V3.1"   "Pp3c5_7360V3.1"   "Pp3c5_7570V3.1"   "Pp3c5_8220V3.1"   "Pp3c5_8580V3.1"  
+[229] "Pp3c5_9420V3.1"   "Pp3c5_9550V3.1"   "Pp3c5_9590V3.1"   "Pp3c5_10250V3.1"  "Pp3c5_10730V3.1"  "Pp3c5_11880V3.1" 
+[235] "Pp3c5_12180V3.1"  "Pp3c5_12420V3.1"  "Pp3c5_12660V3.1"  "Pp3c5_12820V3.1"  "Pp3c5_13160V3.1"  "Pp3c5_16770V3.1" 
+[241] "Pp3c5_17290V3.1"  "Pp3c5_19200V3.1"  "Pp3c5_19460V3.1"  "Pp3c5_20080V3.1"  "Pp3c5_20140V3.1"  "Pp3c5_20690V3.1" 
+[247] "Pp3c5_21520V3.1"  "Pp3c5_22280V3.1"  "Pp3c5_24940V3.1"  "Pp3c5_28020V3.1"  "Pp3c6_130V3.1"    "Pp3c6_170V3.1"   
+[253] "Pp3c6_240V3.1"    "Pp3c6_1620V3.1"   "Pp3c6_2090V3.1"   "Pp3c6_2530V3.1"   "Pp3c6_3710V3.1"   "Pp3c6_3770V3.1"  
+[259] "Pp3c6_3810V3.1"   "Pp3c6_5290V3.1"   "Pp3c6_5350V3.1"   "Pp3c6_6340V3.1"   "Pp3c6_6560V3.1"   "Pp3c6_7400V3.1"  
+[265] "Pp3c6_9090V3.1"   "Pp3c6_10040V3.1"  "Pp3c6_10610V3.1"  "Pp3c6_11980V3.1"  "Pp3c6_12140V3.1"  "Pp3c6_12142V3.1" 
+[271] "Pp3c6_12510V3.1"  "Pp3c6_12520V3.1"  "Pp3c6_12850V3.1"  "Pp3c6_14200V3.1"  "Pp3c6_15020V3.1"  "Pp3c6_15170V3.1" 
+[277] "Pp3c6_15360V3.1"  "Pp3c6_17399V3.1"  "Pp3c6_18190V3.1"  "Pp3c6_18710V3.1"  "Pp3c6_19000V3.1"  "Pp3c6_19150V3.1" 
+[283] "Pp3c6_20300V3.1"  "Pp3c6_20960V3.1"  "Pp3c6_22090V3.1"  "Pp3c6_22780V3.1"  "Pp3c6_23040V3.1"  "Pp3c6_23490V3.1" 
+[289] "Pp3c6_25270V3.1"  "Pp3c6_26510V3.1"  "Pp3c6_26514V3.1"  "Pp3c6_29090V3.1"  "Pp3c6_29390V3.1"  "Pp3c7_650V3.1"   
+[295] "Pp3c7_3310V3.1"   "Pp3c7_3320V3.1"   "Pp3c7_6750V3.1"   "Pp3c7_7150V3.1"   "Pp3c7_7269V3.1"   "Pp3c7_7280V3.1"  
+[301] "Pp3c7_7300V3.1"   "Pp3c7_10610V3.1"  "Pp3c7_12150V3.1"  "Pp3c7_12850V3.1"  "Pp3c7_13340V3.1"  "Pp3c7_14300V3.1" 
+[307] "Pp3c7_14450V3.1"  "Pp3c7_15410V3.1"  "Pp3c7_17220V3.1"  "Pp3c7_18930V3.1"  "Pp3c7_20230V3.1"  "Pp3c7_20720V3.1" 
+[313] "Pp3c7_21310V3.1"  "Pp3c7_22640V3.1"  "Pp3c7_22920V3.1"  "Pp3c7_25080V3.1"  "Pp3c7_25640V3.1"  "Pp3c7_26760V3.1" 
+[319] "Pp3c8_1800V3.1"   "Pp3c8_1940V3.1"   "Pp3c8_2660V3.1"   "Pp3c8_2888V3.1"   "Pp3c8_3600V3.1"   "Pp3c8_5640V3.1"  
+[325] "Pp3c8_6290V3.1"   "Pp3c8_6520V3.1"   "Pp3c8_7680V3.1"   "Pp3c8_8150V3.1"   "Pp3c8_9250V3.1"   "Pp3c8_11120V3.1" 
+[331] "Pp3c8_11160V3.1"  "Pp3c8_13540V3.1"  "Pp3c8_13570V3.1"  "Pp3c8_14190V3.1"  "Pp3c8_15360V3.1"  "Pp3c8_15610V3.1" 
+[337] "Pp3c8_16580V3.1"  "Pp3c8_16760V3.1"  "Pp3c8_17140V3.1"  "Pp3c8_17940V3.1"  "Pp3c8_19540V3.1"  "Pp3c8_19800V3.1" 
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+[349] "Pp3c8_25010V3.1"  "Pp3c9_2020V3.1"   "Pp3c9_3440V3.1"   "Pp3c9_4460V3.1"   "Pp3c9_5310V3.1"   "Pp3c9_6250V3.1"  
+[355] "Pp3c9_6540V3.1"   "Pp3c9_7400V3.1"   "Pp3c9_7970V3.1"   "Pp3c9_9200V3.1"   "Pp3c9_12580V3.1"  "Pp3c9_12590V3.1" 
+[361] "Pp3c9_13730V3.1"  "Pp3c9_14600V3.1"  "Pp3c9_16700V3.1"  "Pp3c9_17890V3.1"  "Pp3c9_19520V3.1"  "Pp3c9_21290V3.1" 
+[367] "Pp3c9_21830V3.1"  "Pp3c9_23190V3.1"  "Pp3c9_24180V3.1"  "Pp3c9_25200V3.1"  "Pp3c9_25700V3.1"  "Pp3c9_25950V3.1" 
+[373] "Pp3c10_380V3.1"   "Pp3c10_1790V3.1"  "Pp3c10_1870V3.1"  "Pp3c10_2340V3.1"  "Pp3c10_2540V3.1"  "Pp3c10_2910V3.1" 
+[379] "Pp3c10_2940V3.1"  "Pp3c10_2970V3.1"  "Pp3c10_3020V3.1"  "Pp3c10_3320V3.1"  "Pp3c10_4440V3.1"  "Pp3c10_4900V3.1" 
+[385] "Pp3c10_5201V3.1"  "Pp3c10_5660V3.1"  "Pp3c10_5750V3.1"  "Pp3c10_5790V3.1"  "Pp3c10_6390V3.1"  "Pp3c10_6410V3.1" 
+[391] "Pp3c10_6880V3.1"  "Pp3c10_7690V3.1"  "Pp3c10_8980V3.1"  "Pp3c10_10220V3.1" "Pp3c10_10290V3.1" "Pp3c10_10490V3.1"
+[397] "Pp3c10_10600V3.1" "Pp3c10_12080V3.1" "Pp3c10_12250V3.1" "Pp3c10_12450V3.1" "Pp3c10_13060V3.1" "Pp3c10_15390V3.1"
+[403] "Pp3c10_16800V3.1" "Pp3c10_18330V3.1" "Pp3c10_20290V3.1" "Pp3c10_20350V3.1" "Pp3c10_21250V3.1" "Pp3c10_21510V3.1"
+[409] "Pp3c10_21693V3.1" "Pp3c10_23130V3.1" "Pp3c10_24000V3.1" "Pp3c10_25371V3.1" "Pp3c10_25410V3.1" "Pp3c10_25450V3.1"
+[415] "Pp3c11_470V3.1"   "Pp3c11_3710V3.1"  "Pp3c11_4100V3.1"  "Pp3c11_4920V3.1"  "Pp3c11_5590V3.1"  "Pp3c11_6700V3.1" 
+[421] "Pp3c11_7910V3.1"  "Pp3c11_8510V3.1"  "Pp3c11_8680V3.1"  "Pp3c11_8730V3.1"  "Pp3c11_8960V3.1"  "Pp3c11_11040V3.1"
+[427] "Pp3c11_11470V3.1" "Pp3c11_11630V3.1" "Pp3c11_12080V3.1" "Pp3c11_14630V3.1" "Pp3c11_15220V3.1" "Pp3c11_15790V3.1"
+[433] "Pp3c11_16051V3.1" "Pp3c11_16970V3.1" "Pp3c11_18230V3.1" "Pp3c11_18420V3.1" "Pp3c11_19850V3.1" "Pp3c11_21590V3.1"
+[439] "Pp3c11_22600V3.1" "Pp3c11_23670V3.1" "Pp3c11_24130V3.1" "Pp3c11_24300V3.1" "Pp3c11_26180V3.1" "Pp3c11_26420V3.1"
+[445] "Pp3c12_350V3.1"   "Pp3c12_2540V3.1"  "Pp3c12_4560V3.1"  "Pp3c12_5390V3.1"  "Pp3c12_6520V3.1"  "Pp3c12_8330V3.1" 
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+[457] "Pp3c12_10890V3.1" "Pp3c12_11230V3.1" "Pp3c12_11880V3.1" "Pp3c12_13250V3.1" "Pp3c12_13870V3.1" "Pp3c12_14210V3.1"
+[463] "Pp3c12_16890V3.1" "Pp3c12_17320V3.1" "Pp3c12_18290V3.1" "Pp3c12_19890V3.1" "Pp3c12_21260V3.1" "Pp3c12_22320V3.1"
+[469] "Pp3c12_22830V3.1" "Pp3c12_23490V3.1" "Pp3c12_24350V3.1" "Pp3c12_24890V3.1" "Pp3c12_25460V3.1" "Pp3c13_910V3.1"  
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+[487] "Pp3c13_14980V3.1" "Pp3c13_15460V3.1" "Pp3c13_15910V3.1" "Pp3c13_15980V3.1" "Pp3c13_16130V3.1" "Pp3c13_16300V3.1"
+[493] "Pp3c13_16610V3.1" "Pp3c13_16980V3.1" "Pp3c13_17460V3.1" "Pp3c13_17480V3.1" "Pp3c13_17650V3.1" "Pp3c13_19580V3.1"
+[499] "Pp3c13_20140V3.1" "Pp3c13_20480V3.1" "Pp3c13_20590V3.1" "Pp3c13_20650V3.1" "Pp3c13_20970V3.1" "Pp3c13_21020V3.1"
+[505] "Pp3c13_21050V3.1" "Pp3c13_21520V3.1" "Pp3c13_21590V3.1" "Pp3c13_22750V3.1" "Pp3c13_24050V3.1" "Pp3c13_24590V3.1"
+[511] "Pp3c14_380V3.1"   "Pp3c14_1230V3.1"  "Pp3c14_1598V3.1"  "Pp3c14_1600V3.1"  "Pp3c14_4330V3.1"  "Pp3c14_5560V3.1" 
+[517] "Pp3c14_6460V3.1"  "Pp3c14_6710V3.1"  "Pp3c14_7160V3.1"  "Pp3c14_7930V3.1"  "Pp3c14_7960V3.1"  "Pp3c14_8650V3.1" 
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+[529] "Pp3c14_12270V3.1" "Pp3c14_12850V3.1" "Pp3c14_14170V3.1" "Pp3c14_14570V3.1" "Pp3c14_15170V3.1" "Pp3c14_15560V3.1"
+[535] "Pp3c14_15610V3.1" "Pp3c14_19291V3.1" "Pp3c14_19730V3.1" "Pp3c14_20450V3.1" "Pp3c14_20468V3.1" "Pp3c14_20830V3.1"
+[541] "Pp3c14_21300V3.1" "Pp3c14_22870V3.1" "Pp3c14_24370V3.1" "Pp3c14_24970V3.1" "Pp3c14_25620V3.1" "Pp3c14_26600V3.1"
+[547] "Pp3c15_70V3.1"    "Pp3c15_830V3.1"   "Pp3c15_1740V3.1"  "Pp3c15_5110V3.1"  "Pp3c15_5610V3.1"  "Pp3c15_5850V3.1" 
+[553] "Pp3c15_6160V3.1"  "Pp3c15_6920V3.1"  "Pp3c15_7930V3.1"  "Pp3c15_10670V3.1" "Pp3c15_10680V3.1" "Pp3c15_11070V3.1"
+[559] "Pp3c15_11580V3.1" "Pp3c15_12110V3.1" "Pp3c15_12230V3.1" "Pp3c15_12410V3.1" "Pp3c15_13040V3.1" "Pp3c15_13310V3.1"
+[565] "Pp3c15_13830V3.1" "Pp3c15_16510V3.1" "Pp3c15_16690V3.1" "Pp3c15_16700V3.1" "Pp3c15_17560V3.1" "Pp3c15_18180V3.1"
+[571] "Pp3c15_18290V3.1" "Pp3c15_18500V3.1" "Pp3c15_19390V3.1" "Pp3c15_19890V3.1" "Pp3c15_22920V3.1" "Pp3c15_23330V3.1"
+[577] "Pp3c15_23580V3.1" "Pp3c15_23900V3.1" "Pp3c15_24070V3.1" "Pp3c16_80V3.1"    "Pp3c16_550V3.1"   "Pp3c16_630V3.1"  
+[583] "Pp3c16_2080V3.1"  "Pp3c16_2820V3.1"  "Pp3c16_4520V3.1"  "Pp3c16_4550V3.1"  "Pp3c16_5120V3.1"  "Pp3c16_5650V3.1" 
+[589] "Pp3c16_6100V3.1"  "Pp3c16_6730V3.1"  "Pp3c16_6920V3.1"  "Pp3c16_7180V3.1"  "Pp3c16_7230V3.1"  "Pp3c16_7610V3.1" 
+[595] "Pp3c16_7660V3.1"  "Pp3c16_8630V3.1"  "Pp3c16_9600V3.1"  "Pp3c16_11740V3.1" "Pp3c16_11920V3.1" "Pp3c16_11960V3.1"
+[601] "Pp3c16_14400V3.1" "Pp3c16_14590V3.1" "Pp3c16_14640V3.1" "Pp3c16_14660V3.1" "Pp3c16_14730V3.1" "Pp3c16_15130V3.1"
+[607] "Pp3c16_15230V3.1" "Pp3c16_15490V3.1" "Pp3c16_15880V3.1" "Pp3c16_16040V3.1" "Pp3c16_17390V3.1" "Pp3c16_19530V3.1"
+[613] "Pp3c16_20090V3.1" "Pp3c16_20400V3.1" "Pp3c16_20540V3.1" "Pp3c16_20660V3.1" "Pp3c16_20890V3.1" "Pp3c16_21110V3.1"
+[619] "Pp3c16_21250V3.1" "Pp3c16_21290V3.1" "Pp3c16_22280V3.1" "Pp3c16_22550V3.1" "Pp3c16_23780V3.1" "Pp3c16_24530V3.1"
+[625] "Pp3c16_25860V3.1" "Pp3c17_1680V3.1"  "Pp3c17_2850V3.1"  "Pp3c17_3880V3.1"  "Pp3c17_4440V3.1"  "Pp3c17_5070V3.1" 
+[631] "Pp3c17_5150V3.1"  "Pp3c17_5160V3.1"  "Pp3c17_5320V3.1"  "Pp3c17_5760V3.1"  "Pp3c17_6970V3.1"  "Pp3c17_7080V3.1" 
+[637] "Pp3c17_7930V3.1"  "Pp3c17_13350V3.1" "Pp3c17_13420V3.1" "Pp3c17_13940V3.1" "Pp3c17_14330V3.1" "Pp3c17_14590V3.1"
+[643] "Pp3c17_14680V3.1" "Pp3c17_15140V3.1" "Pp3c17_16260V3.1" "Pp3c17_16620V3.1" "Pp3c17_17300V3.1" "Pp3c17_17840V3.1"
+[649] "Pp3c17_17870V3.1" "Pp3c17_18190V3.1" "Pp3c17_19052V3.1" "Pp3c17_19710V3.1" "Pp3c17_20120V3.1" "Pp3c17_20640V3.1"
+[655] "Pp3c17_23480V3.1" "Pp3c17_23740V3.1" "Pp3c18_170V3.1"   "Pp3c18_1950V3.1"  "Pp3c18_3810V3.1"  "Pp3c18_4480V3.1" 
+[661] "Pp3c18_4730V3.1"  "Pp3c18_5520V3.1"  "Pp3c18_6770V3.1"  "Pp3c18_6780V3.1"  "Pp3c18_7120V3.1"  "Pp3c18_8100V3.1" 
+[667] "Pp3c18_8240V3.1"  "Pp3c18_9180V3.1"  "Pp3c18_9840V3.1"  "Pp3c18_10730V3.1" "Pp3c18_10760V3.1" "Pp3c18_10780V3.1"
+[673] "Pp3c18_11000V3.1" "Pp3c18_11190V3.1" "Pp3c18_11570V3.1" "Pp3c18_11990V3.1" "Pp3c18_13090V3.1" "Pp3c18_14580V3.1"
+[679] "Pp3c18_17950V3.1" "Pp3c18_18400V3.1" "Pp3c18_20920V3.1" "Pp3c18_21090V3.1" "Pp3c18_21170V3.1" "Pp3c19_1590V3.1" 
+[685] "Pp3c19_1760V3.1"  "Pp3c19_1840V3.1"  "Pp3c19_1860V3.1"  "Pp3c19_3190V3.1"  "Pp3c19_3740V3.1"  "Pp3c19_3750V3.1" 
+[691] "Pp3c19_3840V3.1"  "Pp3c19_3900V3.1"  "Pp3c19_5170V3.1"  "Pp3c19_6660V3.1"  "Pp3c19_7430V3.1"  "Pp3c19_8330V3.1" 
+[697] "Pp3c19_8410V3.1"  "Pp3c19_8770V3.1"  "Pp3c19_9000V3.1"  "Pp3c19_11440V3.1" "Pp3c19_11600V3.1" "Pp3c19_12890V3.1"
+[703] "Pp3c19_14070V3.1" "Pp3c19_14760V3.1" "Pp3c19_15460V3.1" "Pp3c19_16810V3.1" "Pp3c19_17080V3.1" "Pp3c19_18700V3.1"
+[709] "Pp3c19_19100V3.1" "Pp3c19_20120V3.1" "Pp3c19_20840V3.1" "Pp3c19_20870V3.1" "Pp3c19_20900V3.1" "Pp3c19_21160V3.1"
+[715] "Pp3c19_22060V3.1" "Pp3c20_640V3.1"   "Pp3c20_1940V3.1"  "Pp3c20_2280V3.1"  "Pp3c20_2930V3.1"  "Pp3c20_3750V3.1" 
+[721] "Pp3c20_3770V3.1"  "Pp3c20_4670V3.1"  "Pp3c20_4880V3.1"  "Pp3c20_4990V3.1"  "Pp3c20_6430V3.1"  "Pp3c20_7860V3.1" 
+[727] "Pp3c20_8630V3.1"  "Pp3c20_8770V3.1"  "Pp3c20_10270V3.1" "Pp3c20_11510V3.1" "Pp3c20_12850V3.1" "Pp3c20_12980V3.1"
+[733] "Pp3c20_13320V3.1" "Pp3c20_13540V3.1" "Pp3c20_14590V3.1" "Pp3c20_15000V3.1" "Pp3c20_15350V3.1" "Pp3c20_15780V3.1"
+[739] "Pp3c20_16230V3.1" "Pp3c20_18310V3.1" "Pp3c20_20260V3.1" "Pp3c20_20860V3.1" "Pp3c20_21960V3.1" "Pp3c20_21990V3.1"
+[745] "Pp3c20_22450V3.1" "Pp3c20_22820V3.1" "Pp3c20_22930V3.1" "Pp3c20_23180V3.1" "Pp3c20_23240V3.1" "Pp3c20_23430V3.1"
+[751] "Pp3c21_880V3.1"   "Pp3c21_3730V3.1"  "Pp3c21_3950V3.1"  "Pp3c21_4200V3.1"  "Pp3c21_4230V3.1"  "Pp3c21_5150V3.1" 
+[757] "Pp3c21_6390V3.1"  "Pp3c21_7260V3.1"  "Pp3c21_7310V3.1"  "Pp3c21_7810V3.1"  "Pp3c21_8800V3.1"  "Pp3c21_8940V3.1" 
+[763] "Pp3c21_9020V3.1"  "Pp3c21_9980V3.1"  "Pp3c21_10620V3.1" "Pp3c21_10970V3.1" "Pp3c21_11130V3.1" "Pp3c21_11410V3.1"
+[769] "Pp3c21_12100V3.1" "Pp3c21_14450V3.1" "Pp3c21_14540V3.1" "Pp3c21_15030V3.1" "Pp3c21_15140V3.1" "Pp3c21_16093V3.1"
+[775] "Pp3c21_16111V3.1" "Pp3c21_17930V3.1" "Pp3c21_19080V3.1" "Pp3c21_21410V3.1" "Pp3c22_540V3.1"   "Pp3c22_1450V3.1" 
+[781] "Pp3c22_1680V3.1"  "Pp3c22_2400V3.1"  "Pp3c22_3160V3.1"  "Pp3c22_4950V3.1"  "Pp3c22_5470V3.1"  "Pp3c22_5610V3.1" 
+[787] "Pp3c22_6380V3.1"  "Pp3c22_6430V3.1"  "Pp3c22_7050V3.1"  "Pp3c22_7390V3.1"  "Pp3c22_7400V3.1"  "Pp3c22_7690V3.1" 
+[793] "Pp3c22_8470V3.1"  "Pp3c22_8640V3.1"  "Pp3c22_9450V3.1"  "Pp3c22_9700V3.1"  "Pp3c22_10620V3.1" "Pp3c22_11690V3.1"
+[799] "Pp3c22_12920V3.1" "Pp3c22_13920V3.1" "Pp3c22_14530V3.1" "Pp3c22_14940V3.1" "Pp3c22_15040V3.1" "Pp3c22_15050V3.1"
+[805] "Pp3c22_17930V3.1" "Pp3c22_21630V3.1" "Pp3c22_21710V3.1" "Pp3c22_21730V3.1" "Pp3c22_22960V3.1" "Pp3c22_22990V3.1"
+[811] "Pp3c22_23000V3.1" "Pp3c23_800V3.1"   "Pp3c23_1340V3.1"  "Pp3c23_1980V3.1"  "Pp3c23_2880V3.1"  "Pp3c23_2900V3.1" 
+[817] "Pp3c23_3760V3.1"  "Pp3c23_5890V3.1"  "Pp3c23_6060V3.1"  "Pp3c23_6510V3.1"  "Pp3c23_6580V3.1"  "Pp3c23_6600V3.1" 
+[823] "Pp3c23_7740V3.1"  "Pp3c23_8061V3.1"  "Pp3c23_8650V3.1"  "Pp3c23_8670V3.1"  "Pp3c23_10940V3.1" "Pp3c23_11670V3.1"
+[829] "Pp3c23_12960V3.1" "Pp3c23_13700V3.1" "Pp3c23_13750V3.1" "Pp3c23_14420V3.1" "Pp3c23_14660V3.1" "Pp3c23_16290V3.1"
+[835] "Pp3c23_16600V3.1" "Pp3c23_16860V3.1" "Pp3c23_17360V3.1" "Pp3c23_17550V3.1" "Pp3c23_17660V3.1" "Pp3c23_18010V3.1"
+[841] "Pp3c23_18990V3.1" "Pp3c23_20580V3.1" "Pp3c23_20590V3.1" "Pp3c23_20770V3.1" "Pp3c23_21280V3.1" "Pp3c23_21770V3.1"
+[847] "Pp3c23_22230V3.1" "Pp3c24_420V3.1"   "Pp3c24_720V3.1"   "Pp3c24_1050V3.1"  "Pp3c24_1500V3.1"  "Pp3c24_1540V3.1" 
+[853] "Pp3c24_4040V3.1"  "Pp3c24_4420V3.1"  "Pp3c24_5839V3.1"  "Pp3c24_5920V3.1"  "Pp3c24_6680V3.1"  "Pp3c24_6920V3.1" 
+[859] "Pp3c24_8200V3.1"  "Pp3c24_8600V3.1"  "Pp3c24_9210V3.1"  "Pp3c24_9740V3.1"  "Pp3c24_9860V3.1"  "Pp3c24_9920V3.1" 
+[865] "Pp3c24_11260V3.1" "Pp3c24_11420V3.1" "Pp3c24_11450V3.1" "Pp3c24_11870V3.1" "Pp3c24_12430V3.1" "Pp3c24_12520V3.1"
+[871] "Pp3c24_15420V3.1" "Pp3c24_16040V3.1" "Pp3c24_16050V3.1" "Pp3c24_16550V3.1" "Pp3c24_16590V3.1" "Pp3c24_17170V3.1"
+[877] "Pp3c24_18490V3.1" "Pp3c24_18550V3.1" "Pp3c24_18690V3.1" "Pp3c24_19080V3.1" "Pp3c24_19310V3.1" "Pp3c24_19680V3.1"
+[883] "Pp3c24_20180V3.1" "Pp3c24_20750V3.1" "Pp3c24_20960V3.1" "Pp3c25_700V3.1"   "Pp3c25_1440V3.1"  "Pp3c25_2890V3.1" 
+[889] "Pp3c25_3840V3.1"  "Pp3c25_4400V3.1"  "Pp3c25_5720V3.1"  "Pp3c25_6140V3.1"  "Pp3c25_6940V3.1"  "Pp3c25_11400V3.1"
+[895] "Pp3c25_12110V3.1" "Pp3c25_12880V3.1" "Pp3c26_130V3.1"   "Pp3c26_1140V3.1"  "Pp3c26_1510V3.1"  "Pp3c26_2000V3.1" 
+[901] "Pp3c26_3490V3.1"  "Pp3c26_3620V3.1"  "Pp3c26_4700V3.1"  "Pp3c26_5440V3.1"  "Pp3c26_5590V3.1"  "Pp3c26_6740V3.1" 
+[907] "Pp3c26_8330V3.1"  "Pp3c26_8730V3.1"  "Pp3c26_9780V3.1"  "Pp3c26_10480V3.1" "Pp3c26_10990V3.1" "Pp3c26_11180V3.1"
+[913] "Pp3c26_12140V3.1" "Pp3c26_12230V3.1" "Pp3c26_12240V3.1" "Pp3c26_12570V3.1" "Pp3c26_14690V3.1" "Pp3c26_14710V3.1"
+[919] "Pp3c27_1350V3.1"  "Pp3c27_1880V3.1"  "Pp3c27_2310V3.1"  "Pp3c27_3620V3.1"  "Pp3c27_4290V3.1"  "Pp3c27_5030V3.1" 
+[925] "Pp3c27_5820V3.1"  "Pp3c27_6610V3.1"  "Pp3c27_7010V3.1"  "Pp3c27_7020V3.1"  "Pp3c27_7750V3.1"  "Pp3s64_90V3.1"   
+[931] "Pp3s104_40V3.1"   "Pp3s123_10V3.1"   "Pp3s127_20V3.1"  
+[1] "DEGs intersection with direction check"
+[1] 933
+  [1] "Pp3c1_2210V3.1"   "Pp3c1_2420V3.1"   "Pp3c1_3040V3.1"   "Pp3c1_3300V3.1"   "Pp3c1_3610V3.1"   "Pp3c1_5300V3.1"  
+  [7] "Pp3c1_6272V3.1"   "Pp3c1_6640V3.1"   "Pp3c1_8280V3.1"   "Pp3c1_8490V3.1"   "Pp3c1_9320V3.1"   "Pp3c1_9600V3.1"  
+ [13] "Pp3c1_10970V3.1"  "Pp3c1_11030V3.1"  "Pp3c1_13170V3.1"  "Pp3c1_13830V3.1"  "Pp3c1_13930V3.1"  "Pp3c1_14230V3.1" 
+ [19] "Pp3c1_14380V3.1"  "Pp3c1_17080V3.1"  "Pp3c1_18260V3.1"  "Pp3c1_19060V3.1"  "Pp3c1_19190V3.1"  "Pp3c1_19210V3.1" 
+ [25] "Pp3c1_20700V3.1"  "Pp3c1_20960V3.1"  "Pp3c1_21400V3.1"  "Pp3c1_21540V3.1"  "Pp3c1_22120V3.1"  "Pp3c1_22560V3.1" 
+ [31] "Pp3c1_22640V3.1"  "Pp3c1_23000V3.1"  "Pp3c1_23300V3.1"  "Pp3c1_24350V3.1"  "Pp3c1_25080V3.1"  "Pp3c1_26720V3.1" 
+ [37] "Pp3c1_27270V3.1"  "Pp3c1_27990V3.1"  "Pp3c1_28090V3.1"  "Pp3c1_28680V3.1"  "Pp3c1_29300V3.1"  "Pp3c1_29700V3.1" 
+ [43] "Pp3c1_30410V3.1"  "Pp3c1_30570V3.1"  "Pp3c1_30790V3.1"  "Pp3c1_31540V3.1"  "Pp3c1_31680V3.1"  "Pp3c1_31910V3.1" 
+ [49] "Pp3c1_32200V3.1"  "Pp3c1_33460V3.1"  "Pp3c1_34020V3.1"  "Pp3c1_34210V3.1"  "Pp3c1_34240V3.1"  "Pp3c1_34950V3.1" 
+ [55] "Pp3c1_35321V3.1"  "Pp3c1_35330V3.1"  "Pp3c1_35610V3.1"  "Pp3c1_37550V3.1"  "Pp3c1_38210V3.1"  "Pp3c1_39540V3.1" 
+ [61] "Pp3c1_39760V3.1"  "Pp3c1_39780V3.1"  "Pp3c1_40040V3.1"  "Pp3c1_40570V3.1"  "Pp3c1_41090V3.1"  "Pp3c2_1570V3.1"  
+ [67] "Pp3c2_2070V3.1"   "Pp3c2_2220V3.1"   "Pp3c2_2310V3.1"   "Pp3c2_2520V3.1"   "Pp3c2_3800V3.1"   "Pp3c2_4100V3.1"  
+ [73] "Pp3c2_4250V3.1"   "Pp3c2_4520V3.1"   "Pp3c2_6690V3.1"   "Pp3c2_6710V3.1"   "Pp3c2_7940V3.1"   "Pp3c2_8570V3.1"  
+ [79] "Pp3c2_12080V3.1"  "Pp3c2_14090V3.1"  "Pp3c2_15140V3.1"  "Pp3c2_17110V3.1"  "Pp3c2_17290V3.1"  "Pp3c2_17700V3.1" 
+ [85] "Pp3c2_18570V3.1"  "Pp3c2_18870V3.1"  "Pp3c2_19570V3.1"  "Pp3c2_19700V3.1"  "Pp3c2_20840V3.1"  "Pp3c2_22020V3.1" 
+ [91] "Pp3c2_24500V3.1"  "Pp3c2_24620V3.1"  "Pp3c2_25890V3.1"  "Pp3c2_25930V3.1"  "Pp3c2_26720V3.1"  "Pp3c2_29570V3.1" 
+ [97] "Pp3c2_31200V3.1"  "Pp3c2_31920V3.1"  "Pp3c2_31970V3.1"  "Pp3c2_32160V3.1"  "Pp3c2_32640V3.1"  "Pp3c2_32770V3.1" 
+[103] "Pp3c2_34270V3.1"  "Pp3c2_35010V3.1"  "Pp3c2_35740V3.1"  "Pp3c2_35930V3.1"  "Pp3c2_36220V3.1"  "Pp3c2_37670V3.1" 
+[109] "Pp3c2_37900V3.1"  "Pp3c3_240V3.1"    "Pp3c3_810V3.1"    "Pp3c3_950V3.1"    "Pp3c3_1090V3.1"   "Pp3c3_2620V3.1"  
+[115] "Pp3c3_4100V3.1"   "Pp3c3_5420V3.1"   "Pp3c3_5570V3.1"   "Pp3c3_5620V3.1"   "Pp3c3_5720V3.1"   "Pp3c3_5810V3.1"  
+[121] "Pp3c3_9440V3.1"   "Pp3c3_10350V3.1"  "Pp3c3_10560V3.1"  "Pp3c3_10800V3.1"  "Pp3c3_12510V3.1"  "Pp3c3_12560V3.1" 
+[127] "Pp3c3_14080V3.1"  "Pp3c3_14700V3.1"  "Pp3c3_18750V3.1"  "Pp3c3_19490V3.1"  "Pp3c3_20140V3.1"  "Pp3c3_21060V3.1" 
+[133] "Pp3c3_21910V3.1"  "Pp3c3_22090V3.1"  "Pp3c3_22990V3.1"  "Pp3c3_23240V3.1"  "Pp3c3_23880V3.1"  "Pp3c3_26890V3.1" 
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+[637] "Pp3c17_7930V3.1"  "Pp3c17_13350V3.1" "Pp3c17_13420V3.1" "Pp3c17_13940V3.1" "Pp3c17_14330V3.1" "Pp3c17_14590V3.1"
+[643] "Pp3c17_14680V3.1" "Pp3c17_15140V3.1" "Pp3c17_16260V3.1" "Pp3c17_16620V3.1" "Pp3c17_17300V3.1" "Pp3c17_17840V3.1"
+[649] "Pp3c17_17870V3.1" "Pp3c17_18190V3.1" "Pp3c17_19052V3.1" "Pp3c17_19710V3.1" "Pp3c17_20120V3.1" "Pp3c17_20640V3.1"
+[655] "Pp3c17_23480V3.1" "Pp3c17_23740V3.1" "Pp3c18_170V3.1"   "Pp3c18_1950V3.1"  "Pp3c18_3810V3.1"  "Pp3c18_4480V3.1" 
+[661] "Pp3c18_4730V3.1"  "Pp3c18_5520V3.1"  "Pp3c18_6770V3.1"  "Pp3c18_6780V3.1"  "Pp3c18_7120V3.1"  "Pp3c18_8100V3.1" 
+[667] "Pp3c18_8240V3.1"  "Pp3c18_9180V3.1"  "Pp3c18_9840V3.1"  "Pp3c18_10730V3.1" "Pp3c18_10760V3.1" "Pp3c18_10780V3.1"
+[673] "Pp3c18_11000V3.1" "Pp3c18_11190V3.1" "Pp3c18_11570V3.1" "Pp3c18_11990V3.1" "Pp3c18_13090V3.1" "Pp3c18_14580V3.1"
+[679] "Pp3c18_17950V3.1" "Pp3c18_18400V3.1" "Pp3c18_20920V3.1" "Pp3c18_21090V3.1" "Pp3c18_21170V3.1" "Pp3c19_1590V3.1" 
+[685] "Pp3c19_1760V3.1"  "Pp3c19_1840V3.1"  "Pp3c19_1860V3.1"  "Pp3c19_3190V3.1"  "Pp3c19_3740V3.1"  "Pp3c19_3750V3.1" 
+[691] "Pp3c19_3840V3.1"  "Pp3c19_3900V3.1"  "Pp3c19_5170V3.1"  "Pp3c19_6660V3.1"  "Pp3c19_7430V3.1"  "Pp3c19_8330V3.1" 
+[697] "Pp3c19_8410V3.1"  "Pp3c19_8770V3.1"  "Pp3c19_9000V3.1"  "Pp3c19_11440V3.1" "Pp3c19_11600V3.1" "Pp3c19_12890V3.1"
+[703] "Pp3c19_14070V3.1" "Pp3c19_14760V3.1" "Pp3c19_15460V3.1" "Pp3c19_16810V3.1" "Pp3c19_17080V3.1" "Pp3c19_18700V3.1"
+[709] "Pp3c19_19100V3.1" "Pp3c19_20120V3.1" "Pp3c19_20840V3.1" "Pp3c19_20870V3.1" "Pp3c19_20900V3.1" "Pp3c19_21160V3.1"
+[715] "Pp3c19_22060V3.1" "Pp3c20_640V3.1"   "Pp3c20_1940V3.1"  "Pp3c20_2280V3.1"  "Pp3c20_2930V3.1"  "Pp3c20_3750V3.1" 
+[721] "Pp3c20_3770V3.1"  "Pp3c20_4670V3.1"  "Pp3c20_4880V3.1"  "Pp3c20_4990V3.1"  "Pp3c20_6430V3.1"  "Pp3c20_7860V3.1" 
+[727] "Pp3c20_8630V3.1"  "Pp3c20_8770V3.1"  "Pp3c20_10270V3.1" "Pp3c20_11510V3.1" "Pp3c20_12850V3.1" "Pp3c20_12980V3.1"
+[733] "Pp3c20_13320V3.1" "Pp3c20_13540V3.1" "Pp3c20_14590V3.1" "Pp3c20_15000V3.1" "Pp3c20_15350V3.1" "Pp3c20_15780V3.1"
+[739] "Pp3c20_16230V3.1" "Pp3c20_18310V3.1" "Pp3c20_20260V3.1" "Pp3c20_20860V3.1" "Pp3c20_21960V3.1" "Pp3c20_21990V3.1"
+[745] "Pp3c20_22450V3.1" "Pp3c20_22820V3.1" "Pp3c20_22930V3.1" "Pp3c20_23180V3.1" "Pp3c20_23240V3.1" "Pp3c20_23430V3.1"
+[751] "Pp3c21_880V3.1"   "Pp3c21_3730V3.1"  "Pp3c21_3950V3.1"  "Pp3c21_4200V3.1"  "Pp3c21_4230V3.1"  "Pp3c21_5150V3.1" 
+[757] "Pp3c21_6390V3.1"  "Pp3c21_7260V3.1"  "Pp3c21_7310V3.1"  "Pp3c21_7810V3.1"  "Pp3c21_8800V3.1"  "Pp3c21_8940V3.1" 
+[763] "Pp3c21_9020V3.1"  "Pp3c21_9980V3.1"  "Pp3c21_10620V3.1" "Pp3c21_10970V3.1" "Pp3c21_11130V3.1" "Pp3c21_11410V3.1"
+[769] "Pp3c21_12100V3.1" "Pp3c21_14450V3.1" "Pp3c21_14540V3.1" "Pp3c21_15030V3.1" "Pp3c21_15140V3.1" "Pp3c21_16093V3.1"
+[775] "Pp3c21_16111V3.1" "Pp3c21_17930V3.1" "Pp3c21_19080V3.1" "Pp3c21_21410V3.1" "Pp3c22_540V3.1"   "Pp3c22_1450V3.1" 
+[781] "Pp3c22_1680V3.1"  "Pp3c22_2400V3.1"  "Pp3c22_3160V3.1"  "Pp3c22_4950V3.1"  "Pp3c22_5470V3.1"  "Pp3c22_5610V3.1" 
+[787] "Pp3c22_6380V3.1"  "Pp3c22_6430V3.1"  "Pp3c22_7050V3.1"  "Pp3c22_7390V3.1"  "Pp3c22_7400V3.1"  "Pp3c22_7690V3.1" 
+[793] "Pp3c22_8470V3.1"  "Pp3c22_8640V3.1"  "Pp3c22_9450V3.1"  "Pp3c22_9700V3.1"  "Pp3c22_10620V3.1" "Pp3c22_11690V3.1"
+[799] "Pp3c22_12920V3.1" "Pp3c22_13920V3.1" "Pp3c22_14530V3.1" "Pp3c22_14940V3.1" "Pp3c22_15040V3.1" "Pp3c22_15050V3.1"
+[805] "Pp3c22_17930V3.1" "Pp3c22_21630V3.1" "Pp3c22_21710V3.1" "Pp3c22_21730V3.1" "Pp3c22_22960V3.1" "Pp3c22_22990V3.1"
+[811] "Pp3c22_23000V3.1" "Pp3c23_800V3.1"   "Pp3c23_1340V3.1"  "Pp3c23_1980V3.1"  "Pp3c23_2880V3.1"  "Pp3c23_2900V3.1" 
+[817] "Pp3c23_3760V3.1"  "Pp3c23_5890V3.1"  "Pp3c23_6060V3.1"  "Pp3c23_6510V3.1"  "Pp3c23_6580V3.1"  "Pp3c23_6600V3.1" 
+[823] "Pp3c23_7740V3.1"  "Pp3c23_8061V3.1"  "Pp3c23_8650V3.1"  "Pp3c23_8670V3.1"  "Pp3c23_10940V3.1" "Pp3c23_11670V3.1"
+[829] "Pp3c23_12960V3.1" "Pp3c23_13700V3.1" "Pp3c23_13750V3.1" "Pp3c23_14420V3.1" "Pp3c23_14660V3.1" "Pp3c23_16290V3.1"
+[835] "Pp3c23_16600V3.1" "Pp3c23_16860V3.1" "Pp3c23_17360V3.1" "Pp3c23_17550V3.1" "Pp3c23_17660V3.1" "Pp3c23_18010V3.1"
+[841] "Pp3c23_18990V3.1" "Pp3c23_20580V3.1" "Pp3c23_20590V3.1" "Pp3c23_20770V3.1" "Pp3c23_21280V3.1" "Pp3c23_21770V3.1"
+[847] "Pp3c23_22230V3.1" "Pp3c24_420V3.1"   "Pp3c24_720V3.1"   "Pp3c24_1050V3.1"  "Pp3c24_1500V3.1"  "Pp3c24_1540V3.1" 
+[853] "Pp3c24_4040V3.1"  "Pp3c24_4420V3.1"  "Pp3c24_5839V3.1"  "Pp3c24_5920V3.1"  "Pp3c24_6680V3.1"  "Pp3c24_6920V3.1" 
+[859] "Pp3c24_8200V3.1"  "Pp3c24_8600V3.1"  "Pp3c24_9210V3.1"  "Pp3c24_9740V3.1"  "Pp3c24_9860V3.1"  "Pp3c24_9920V3.1" 
+[865] "Pp3c24_11260V3.1" "Pp3c24_11420V3.1" "Pp3c24_11450V3.1" "Pp3c24_11870V3.1" "Pp3c24_12430V3.1" "Pp3c24_12520V3.1"
+[871] "Pp3c24_15420V3.1" "Pp3c24_16040V3.1" "Pp3c24_16050V3.1" "Pp3c24_16550V3.1" "Pp3c24_16590V3.1" "Pp3c24_17170V3.1"
+[877] "Pp3c24_18490V3.1" "Pp3c24_18550V3.1" "Pp3c24_18690V3.1" "Pp3c24_19080V3.1" "Pp3c24_19310V3.1" "Pp3c24_19680V3.1"
+[883] "Pp3c24_20180V3.1" "Pp3c24_20750V3.1" "Pp3c24_20960V3.1" "Pp3c25_700V3.1"   "Pp3c25_1440V3.1"  "Pp3c25_2890V3.1" 
+[889] "Pp3c25_3840V3.1"  "Pp3c25_4400V3.1"  "Pp3c25_5720V3.1"  "Pp3c25_6140V3.1"  "Pp3c25_6940V3.1"  "Pp3c25_11400V3.1"
+[895] "Pp3c25_12110V3.1" "Pp3c25_12880V3.1" "Pp3c26_130V3.1"   "Pp3c26_1140V3.1"  "Pp3c26_1510V3.1"  "Pp3c26_2000V3.1" 
+[901] "Pp3c26_3490V3.1"  "Pp3c26_3620V3.1"  "Pp3c26_4700V3.1"  "Pp3c26_5440V3.1"  "Pp3c26_5590V3.1"  "Pp3c26_6740V3.1" 
+[907] "Pp3c26_8330V3.1"  "Pp3c26_8730V3.1"  "Pp3c26_9780V3.1"  "Pp3c26_10480V3.1" "Pp3c26_10990V3.1" "Pp3c26_11180V3.1"
+[913] "Pp3c26_12140V3.1" "Pp3c26_12230V3.1" "Pp3c26_12240V3.1" "Pp3c26_12570V3.1" "Pp3c26_14690V3.1" "Pp3c26_14710V3.1"
+[919] "Pp3c27_1350V3.1"  "Pp3c27_1880V3.1"  "Pp3c27_2310V3.1"  "Pp3c27_3620V3.1"  "Pp3c27_4290V3.1"  "Pp3c27_5030V3.1" 
+[925] "Pp3c27_5820V3.1"  "Pp3c27_6610V3.1"  "Pp3c27_7010V3.1"  "Pp3c27_7020V3.1"  "Pp3c27_7750V3.1"  "Pp3s64_90V3.1"   
+[931] "Pp3s104_40V3.1"   "Pp3s123_10V3.1"   "Pp3s127_20V3.1"  
+[1] "DEGs edgeR"
+[1] 4524
+[1] "DEGs deseq2"
+[1] 3324
+[1] "DEGs noiseq"
+[1] 1497
+[1] "DEGs noiseqbio"
+[1] 1466
+[1] "DEGs intersection without direction check  (three methods)"
+[1] 1418
+   [1] "Pp3c1_1330V3.1"   "Pp3c1_1650V3.1"   "Pp3c1_2210V3.1"   "Pp3c1_2220V3.1"   "Pp3c1_2420V3.1"   "Pp3c1_3040V3.1"  
+   [7] "Pp3c1_3300V3.1"   "Pp3c1_3610V3.1"   "Pp3c1_4470V3.1"   "Pp3c1_5300V3.1"   "Pp3c1_6110V3.1"   "Pp3c1_6272V3.1"  
+  [13] "Pp3c1_6640V3.1"   "Pp3c1_7170V3.1"   "Pp3c1_7380V3.1"   "Pp3c1_7830V3.1"   "Pp3c1_8280V3.1"   "Pp3c1_8490V3.1"  
+  [19] "Pp3c1_9320V3.1"   "Pp3c1_9600V3.1"   "Pp3c1_10000V3.1"  "Pp3c1_10970V3.1"  "Pp3c1_11030V3.1"  "Pp3c1_13170V3.1" 
+  [25] "Pp3c1_13830V3.1"  "Pp3c1_13930V3.1"  "Pp3c1_14230V3.1"  "Pp3c1_14380V3.1"  "Pp3c1_15750V3.1"  "Pp3c1_17080V3.1" 
+  [31] "Pp3c1_17870V3.1"  "Pp3c1_18260V3.1"  "Pp3c1_18830V3.1"  "Pp3c1_19060V3.1"  "Pp3c1_19190V3.1"  "Pp3c1_19210V3.1" 
+  [37] "Pp3c1_20700V3.1"  "Pp3c1_20960V3.1"  "Pp3c1_20980V3.1"  "Pp3c1_21400V3.1"  "Pp3c1_21540V3.1"  "Pp3c1_22120V3.1" 
+  [43] "Pp3c1_22560V3.1"  "Pp3c1_22640V3.1"  "Pp3c1_23000V3.1"  "Pp3c1_23300V3.1"  "Pp3c1_24350V3.1"  "Pp3c1_24570V3.1" 
+  [49] "Pp3c1_25080V3.1"  "Pp3c1_26720V3.1"  "Pp3c1_27020V3.1"  "Pp3c1_27270V3.1"  "Pp3c1_27630V3.1"  "Pp3c1_27990V3.1" 
+  [55] "Pp3c1_28090V3.1"  "Pp3c1_28340V3.1"  "Pp3c1_28680V3.1"  "Pp3c1_29300V3.1"  "Pp3c1_29700V3.1"  "Pp3c1_30410V3.1" 
+  [61] "Pp3c1_30550V3.1"  "Pp3c1_30570V3.1"  "Pp3c1_30790V3.1"  "Pp3c1_31540V3.1"  "Pp3c1_31680V3.1"  "Pp3c1_31830V3.1" 
+  [67] "Pp3c1_31910V3.1"  "Pp3c1_32200V3.1"  "Pp3c1_32560V3.1"  "Pp3c1_33460V3.1"  "Pp3c1_34020V3.1"  "Pp3c1_34210V3.1" 
+  [73] "Pp3c1_34240V3.1"  "Pp3c1_34950V3.1"  "Pp3c1_35321V3.1"  "Pp3c1_35330V3.1"  "Pp3c1_35610V3.1"  "Pp3c1_36100V3.1" 
+  [79] "Pp3c1_36129V3.1"  "Pp3c1_36410V3.1"  "Pp3c1_37550V3.1"  "Pp3c1_38210V3.1"  "Pp3c1_38740V3.1"  "Pp3c1_39540V3.1" 
+  [85] "Pp3c1_39760V3.1"  "Pp3c1_39780V3.1"  "Pp3c1_39900V3.1"  "Pp3c1_40040V3.1"  "Pp3c1_40350V3.1"  "Pp3c1_40570V3.1" 
+  [91] "Pp3c1_40610V3.1"  "Pp3c1_41090V3.1"  "Pp3c1_42570V3.1"  "Pp3c2_1330V3.1"   "Pp3c2_1570V3.1"   "Pp3c2_2070V3.1"  
+  [97] "Pp3c2_2220V3.1"   "Pp3c2_2310V3.1"   "Pp3c2_2520V3.1"   "Pp3c2_3800V3.1"   "Pp3c2_3980V3.1"   "Pp3c2_4100V3.1"  
+ [103] "Pp3c2_4250V3.1"   "Pp3c2_4520V3.1"   "Pp3c2_4940V3.1"   "Pp3c2_6160V3.1"   "Pp3c2_6520V3.1"   "Pp3c2_6690V3.1"  
+ [109] "Pp3c2_6710V3.1"   "Pp3c2_7120V3.1"   "Pp3c2_7230V3.1"   "Pp3c2_7790V3.1"   "Pp3c2_7940V3.1"   "Pp3c2_8570V3.1"  
+ [115] "Pp3c2_9940V3.1"   "Pp3c2_10130V3.1"  "Pp3c2_12080V3.1"  "Pp3c2_12290V3.1"  "Pp3c2_13270V3.1"  "Pp3c2_14090V3.1" 
+ [121] "Pp3c2_14160V3.1"  "Pp3c2_14210V3.1"  "Pp3c2_15140V3.1"  "Pp3c2_17110V3.1"  "Pp3c2_17290V3.1"  "Pp3c2_17700V3.1" 
+ [127] "Pp3c2_17900V3.1"  "Pp3c2_18570V3.1"  "Pp3c2_18870V3.1"  "Pp3c2_19570V3.1"  "Pp3c2_19640V3.1"  "Pp3c2_19700V3.1" 
+ [133] "Pp3c2_19780V3.1"  "Pp3c2_20840V3.1"  "Pp3c2_21710V3.1"  "Pp3c2_22020V3.1"  "Pp3c2_24500V3.1"  "Pp3c2_24620V3.1" 
+ [139] "Pp3c2_25000V3.1"  "Pp3c2_25720V3.1"  "Pp3c2_25890V3.1"  "Pp3c2_25930V3.1"  "Pp3c2_26700V3.1"  "Pp3c2_26720V3.1" 
+ [145] "Pp3c2_28140V3.1"  "Pp3c2_29570V3.1"  "Pp3c2_30370V3.1"  "Pp3c2_30580V3.1"  "Pp3c2_30620V3.1"  "Pp3c2_31200V3.1" 
+ [151] "Pp3c2_31270V3.1"  "Pp3c2_31920V3.1"  "Pp3c2_31970V3.1"  "Pp3c2_32160V3.1"  "Pp3c2_32540V3.1"  "Pp3c2_32600V3.1" 
+ [157] "Pp3c2_32640V3.1"  "Pp3c2_32770V3.1"  "Pp3c2_33980V3.1"  "Pp3c2_34270V3.1"  "Pp3c2_34550V3.1"  "Pp3c2_34630V3.1" 
+ [163] "Pp3c2_34670V3.1"  "Pp3c2_35010V3.1"  "Pp3c2_35740V3.1"  "Pp3c2_35930V3.1"  "Pp3c2_36220V3.1"  "Pp3c2_37670V3.1" 
+ [169] "Pp3c2_37900V3.1"  "Pp3c2_37990V3.1"  "Pp3c3_240V3.1"    "Pp3c3_620V3.1"    "Pp3c3_810V3.1"    "Pp3c3_950V3.1"   
+ [175] "Pp3c3_1090V3.1"   "Pp3c3_1160V3.1"   "Pp3c3_2620V3.1"   "Pp3c3_2980V3.1"   "Pp3c3_4100V3.1"   "Pp3c3_4970V3.1"  
+ [181] "Pp3c3_5420V3.1"   "Pp3c3_5570V3.1"   "Pp3c3_5620V3.1"   "Pp3c3_5720V3.1"   "Pp3c3_5810V3.1"   "Pp3c3_6420V3.1"  
+ [187] "Pp3c3_7930V3.1"   "Pp3c3_8370V3.1"   "Pp3c3_8490V3.1"   "Pp3c3_8880V3.1"   "Pp3c3_9440V3.1"   "Pp3c3_9740V3.1"  
+ [193] "Pp3c3_10350V3.1"  "Pp3c3_10560V3.1"  "Pp3c3_10800V3.1"  "Pp3c3_12510V3.1"  "Pp3c3_12560V3.1"  "Pp3c3_12890V3.1" 
+ [199] "Pp3c3_14080V3.1"  "Pp3c3_14700V3.1"  "Pp3c3_15040V3.1"  "Pp3c3_16280V3.1"  "Pp3c3_16880V3.1"  "Pp3c3_17207V3.1" 
+ [205] "Pp3c3_17340V3.1"  "Pp3c3_17750V3.1"  "Pp3c3_18750V3.1"  "Pp3c3_19490V3.1"  "Pp3c3_20140V3.1"  "Pp3c3_20420V3.1" 
+ [211] "Pp3c3_20980V3.1"  "Pp3c3_21060V3.1"  "Pp3c3_21910V3.1"  "Pp3c3_22090V3.1"  "Pp3c3_22850V3.1"  "Pp3c3_22990V3.1" 
+ [217] "Pp3c3_23240V3.1"  "Pp3c3_23880V3.1"  "Pp3c3_26530V3.1"  "Pp3c3_26890V3.1"  "Pp3c3_27000V3.1"  "Pp3c3_27280V3.1" 
+ [223] "Pp3c3_27720V3.1"  "Pp3c3_27900V3.1"  "Pp3c3_28120V3.1"  "Pp3c3_28300V3.1"  "Pp3c3_28310V3.1"  "Pp3c3_28810V3.1" 
+ [229] "Pp3c3_29330V3.1"  "Pp3c3_29790V3.1"  "Pp3c3_30210V3.1"  "Pp3c3_30330V3.1"  "Pp3c3_30500V3.1"  "Pp3c3_31900V3.1" 
+ [235] "Pp3c3_32210V3.1"  "Pp3c3_32230V3.1"  "Pp3c3_32790V3.1"  "Pp3c3_32860V3.1"  "Pp3c3_34050V3.1"  "Pp3c3_34460V3.1" 
+ [241] "Pp3c3_34790V3.1"  "Pp3c3_35180V3.1"  "Pp3c3_35270V3.1"  "Pp3c3_35850V3.1"  "Pp3c3_37540V3.1"  "Pp3c4_1240V3.1"  
+ [247] "Pp3c4_3170V3.1"   "Pp3c4_3190V3.1"   "Pp3c4_3490V3.1"   "Pp3c4_3520V3.1"   "Pp3c4_3600V3.1"   "Pp3c4_3720V3.1"  
+ [253] "Pp3c4_3820V3.1"   "Pp3c4_3930V3.1"   "Pp3c4_4820V3.1"   "Pp3c4_5090V3.1"   "Pp3c4_5170V3.1"   "Pp3c4_5680V3.1"  
+ [259] "Pp3c4_5690V3.1"   "Pp3c4_6260V3.1"   "Pp3c4_6500V3.1"   "Pp3c4_6620V3.1"   "Pp3c4_6830V3.1"   "Pp3c4_7300V3.1"  
+ [265] "Pp3c4_7960V3.1"   "Pp3c4_8159V3.1"   "Pp3c4_8171V3.1"   "Pp3c4_8330V3.1"   "Pp3c4_8470V3.1"   "Pp3c4_8610V3.1"  
+ [271] "Pp3c4_9670V3.1"   "Pp3c4_10120V3.1"  "Pp3c4_10695V3.1"  "Pp3c4_11490V3.1"  "Pp3c4_11800V3.1"  "Pp3c4_14550V3.1" 
+ [277] "Pp3c4_15150V3.1"  "Pp3c4_15470V3.1"  "Pp3c4_16570V3.1"  "Pp3c4_16840V3.1"  "Pp3c4_17170V3.1"  "Pp3c4_17240V3.1" 
+ [283] "Pp3c4_17920V3.1"  "Pp3c4_19720V3.1"  "Pp3c4_20080V3.1"  "Pp3c4_20230V3.1"  "Pp3c4_20750V3.1"  "Pp3c4_22140V3.1" 
+ [289] "Pp3c4_22490V3.1"  "Pp3c4_22510V3.1"  "Pp3c4_23110V3.1"  "Pp3c4_23170V3.1"  "Pp3c4_23500V3.1"  "Pp3c4_24130V3.1" 
+ [295] "Pp3c4_24470V3.1"  "Pp3c4_25090V3.1"  "Pp3c4_25460V3.1"  "Pp3c4_26000V3.1"  "Pp3c4_26620V3.1"  "Pp3c4_26900V3.1" 
+ [301] "Pp3c4_26990V3.1"  "Pp3c4_28370V3.1"  "Pp3c4_29000V3.1"  "Pp3c4_30520V3.1"  "Pp3c4_30547V3.1"  "Pp3c4_30860V3.1" 
+ [307] "Pp3c4_30870V3.1"  "Pp3c4_30950V3.1"  "Pp3c4_31590V3.1"  "Pp3c4_31920V3.1"  "Pp3c4_32350V3.1"  "Pp3c5_570V3.1"   
+ [313] "Pp3c5_690V3.1"    "Pp3c5_880V3.1"    "Pp3c5_889V3.1"    "Pp3c5_960V3.1"    "Pp3c5_1370V3.1"   "Pp3c5_1730V3.1"  
+ [319] "Pp3c5_1800V3.1"   "Pp3c5_2190V3.1"   "Pp3c5_2900V3.1"   "Pp3c5_3300V3.1"   "Pp3c5_3340V3.1"   "Pp3c5_3660V3.1"  
+ [325] "Pp3c5_4110V3.1"   "Pp3c5_4140V3.1"   "Pp3c5_4200V3.1"   "Pp3c5_4230V3.1"   "Pp3c5_4350V3.1"   "Pp3c5_4460V3.1"  
+ [331] "Pp3c5_4840V3.1"   "Pp3c5_5090V3.1"   "Pp3c5_5150V3.1"   "Pp3c5_5410V3.1"   "Pp3c5_5590V3.1"   "Pp3c5_6270V3.1"  
+ [337] "Pp3c5_6300V3.1"   "Pp3c5_7360V3.1"   "Pp3c5_7570V3.1"   "Pp3c5_7940V3.1"   "Pp3c5_8220V3.1"   "Pp3c5_8240V3.1"  
+ [343] "Pp3c5_8580V3.1"   "Pp3c5_9420V3.1"   "Pp3c5_9550V3.1"   "Pp3c5_9590V3.1"   "Pp3c5_10250V3.1"  "Pp3c5_10280V3.1" 
+ [349] "Pp3c5_10730V3.1"  "Pp3c5_11200V3.1"  "Pp3c5_11800V3.1"  "Pp3c5_11880V3.1"  "Pp3c5_12030V3.1"  "Pp3c5_12180V3.1" 
+ [355] "Pp3c5_12420V3.1"  "Pp3c5_12660V3.1"  "Pp3c5_12820V3.1"  "Pp3c5_13160V3.1"  "Pp3c5_14810V3.1"  "Pp3c5_15500V3.1" 
+ [361] "Pp3c5_15580V3.1"  "Pp3c5_16520V3.1"  "Pp3c5_16770V3.1"  "Pp3c5_17290V3.1"  "Pp3c5_19200V3.1"  "Pp3c5_19220V3.1" 
+ [367] "Pp3c5_19300V3.1"  "Pp3c5_19460V3.1"  "Pp3c5_20080V3.1"  "Pp3c5_20140V3.1"  "Pp3c5_20690V3.1"  "Pp3c5_20800V3.1" 
+ [373] "Pp3c5_20920V3.1"  "Pp3c5_21520V3.1"  "Pp3c5_21897V3.1"  "Pp3c5_22280V3.1"  "Pp3c5_22420V3.1"  "Pp3c5_24610V3.1" 
+ [379] "Pp3c5_24720V3.1"  "Pp3c5_24760V3.1"  "Pp3c5_24940V3.1"  "Pp3c5_25650V3.1"  "Pp3c5_28020V3.1"  "Pp3c5_28350V3.1" 
+ [385] "Pp3c5_28500V3.1"  "Pp3c6_80V3.1"     "Pp3c6_130V3.1"    "Pp3c6_170V3.1"    "Pp3c6_240V3.1"    "Pp3c6_1620V3.1"  
+ [391] "Pp3c6_2090V3.1"   "Pp3c6_2530V3.1"   "Pp3c6_3710V3.1"   "Pp3c6_3770V3.1"   "Pp3c6_3810V3.1"   "Pp3c6_5150V3.1"  
+ [397] "Pp3c6_5290V3.1"   "Pp3c6_5350V3.1"   "Pp3c6_5430V3.1"   "Pp3c6_5850V3.1"   "Pp3c6_6340V3.1"   "Pp3c6_6560V3.1"  
+ [403] "Pp3c6_7400V3.1"   "Pp3c6_9090V3.1"   "Pp3c6_10040V3.1"  "Pp3c6_10090V3.1"  "Pp3c6_10610V3.1"  "Pp3c6_11980V3.1" 
+ [409] "Pp3c6_12140V3.1"  "Pp3c6_12142V3.1"  "Pp3c6_12510V3.1"  "Pp3c6_12520V3.1"  "Pp3c6_12570V3.1"  "Pp3c6_12850V3.1" 
+ [415] "Pp3c6_14200V3.1"  "Pp3c6_14770V3.1"  "Pp3c6_14880V3.1"  "Pp3c6_15020V3.1"  "Pp3c6_15170V3.1"  "Pp3c6_15360V3.1" 
+ [421] "Pp3c6_17010V3.1"  "Pp3c6_17399V3.1"  "Pp3c6_17900V3.1"  "Pp3c6_18190V3.1"  "Pp3c6_18710V3.1"  "Pp3c6_19000V3.1" 
+ [427] "Pp3c6_19150V3.1"  "Pp3c6_19880V3.1"  "Pp3c6_20300V3.1"  "Pp3c6_20610V3.1"  "Pp3c6_20660V3.1"  "Pp3c6_20960V3.1" 
+ [433] "Pp3c6_21160V3.1"  "Pp3c6_21500V3.1"  "Pp3c6_21940V3.1"  "Pp3c6_22090V3.1"  "Pp3c6_22340V3.1"  "Pp3c6_22780V3.1" 
+ [439] "Pp3c6_22830V3.1"  "Pp3c6_23000V3.1"  "Pp3c6_23040V3.1"  "Pp3c6_23230V3.1"  "Pp3c6_23490V3.1"  "Pp3c6_23830V3.1" 
+ [445] "Pp3c6_24490V3.1"  "Pp3c6_25270V3.1"  "Pp3c6_25350V3.1"  "Pp3c6_26460V3.1"  "Pp3c6_26510V3.1"  "Pp3c6_26514V3.1" 
+ [451] "Pp3c6_29090V3.1"  "Pp3c6_29390V3.1"  "Pp3c7_650V3.1"    "Pp3c7_1080V3.1"   "Pp3c7_1880V3.1"   "Pp3c7_2130V3.1"  
+ [457] "Pp3c7_2490V3.1"   "Pp3c7_3310V3.1"   "Pp3c7_3320V3.1"   "Pp3c7_5230V3.1"   "Pp3c7_6750V3.1"   "Pp3c7_7150V3.1"  
+ [463] "Pp3c7_7269V3.1"   "Pp3c7_7280V3.1"   "Pp3c7_7300V3.1"   "Pp3c7_7830V3.1"   "Pp3c7_7930V3.1"   "Pp3c7_10610V3.1" 
+ [469] "Pp3c7_12150V3.1"  "Pp3c7_12220V3.1"  "Pp3c7_12850V3.1"  "Pp3c7_13340V3.1"  "Pp3c7_13580V3.1"  "Pp3c7_14300V3.1" 
+ [475] "Pp3c7_14450V3.1"  "Pp3c7_14650V3.1"  "Pp3c7_14800V3.1"  "Pp3c7_15410V3.1"  "Pp3c7_17220V3.1"  "Pp3c7_18311V3.1" 
+ [481] "Pp3c7_18930V3.1"  "Pp3c7_19260V3.1"  "Pp3c7_20230V3.1"  "Pp3c7_20320V3.1"  "Pp3c7_20720V3.1"  "Pp3c7_20852V3.1" 
+ [487] "Pp3c7_21160V3.1"  "Pp3c7_21310V3.1"  "Pp3c7_22640V3.1"  "Pp3c7_22920V3.1"  "Pp3c7_23680V3.1"  "Pp3c7_23810V3.1" 
+ [493] "Pp3c7_25080V3.1"  "Pp3c7_25280V3.1"  "Pp3c7_25640V3.1"  "Pp3c7_26760V3.1"  "Pp3c8_870V3.1"    "Pp3c8_970V3.1"   
+ [499] "Pp3c8_1800V3.1"   "Pp3c8_1940V3.1"   "Pp3c8_2660V3.1"   "Pp3c8_2888V3.1"   "Pp3c8_3520V3.1"   "Pp3c8_3600V3.1"  
+ [505] "Pp3c8_5640V3.1"   "Pp3c8_6290V3.1"   "Pp3c8_6520V3.1"   "Pp3c8_6920V3.1"   "Pp3c8_7680V3.1"   "Pp3c8_8000V3.1"  
+ [511] "Pp3c8_8150V3.1"   "Pp3c8_8720V3.1"   "Pp3c8_9250V3.1"   "Pp3c8_11120V3.1"  "Pp3c8_11160V3.1"  "Pp3c8_13280V3.1" 
+ [517] "Pp3c8_13540V3.1"  "Pp3c8_13570V3.1"  "Pp3c8_13580V3.1"  "Pp3c8_14190V3.1"  "Pp3c8_15360V3.1"  "Pp3c8_15610V3.1" 
+ [523] "Pp3c8_16580V3.1"  "Pp3c8_16760V3.1"  "Pp3c8_17140V3.1"  "Pp3c8_17430V3.1"  "Pp3c8_17580V3.1"  "Pp3c8_17810V3.1" 
+ [529] "Pp3c8_17920V3.1"  "Pp3c8_17940V3.1"  "Pp3c8_18580V3.1"  "Pp3c8_18880V3.1"  "Pp3c8_19540V3.1"  "Pp3c8_19800V3.1" 
+ [535] "Pp3c8_20150V3.1"  "Pp3c8_20410V3.1"  "Pp3c8_20549V3.1"  "Pp3c8_21100V3.1"  "Pp3c8_21260V3.1"  "Pp3c8_21600V3.1" 
+ [541] "Pp3c8_21770V3.1"  "Pp3c8_21830V3.1"  "Pp3c8_22210V3.1"  "Pp3c8_24120V3.1"  "Pp3c8_24460V3.1"  "Pp3c8_24840V3.1" 
+ [547] "Pp3c8_25010V3.1"  "Pp3c9_1000V3.1"   "Pp3c9_2020V3.1"   "Pp3c9_2340V3.1"   "Pp3c9_3300V3.1"   "Pp3c9_3440V3.1"  
+ [553] "Pp3c9_4170V3.1"   "Pp3c9_4460V3.1"   "Pp3c9_4500V3.1"   "Pp3c9_4940V3.1"   "Pp3c9_5310V3.1"   "Pp3c9_5710V3.1"  
+ [559] "Pp3c9_6180V3.1"   "Pp3c9_6250V3.1"   "Pp3c9_6540V3.1"   "Pp3c9_6850V3.1"   "Pp3c9_7400V3.1"   "Pp3c9_7970V3.1"  
+ [565] "Pp3c9_8580V3.1"   "Pp3c9_9200V3.1"   "Pp3c9_10730V3.1"  "Pp3c9_11060V3.1"  "Pp3c9_11700V3.1"  "Pp3c9_12580V3.1" 
+ [571] "Pp3c9_12590V3.1"  "Pp3c9_13280V3.1"  "Pp3c9_13730V3.1"  "Pp3c9_14600V3.1"  "Pp3c9_14900V3.1"  "Pp3c9_16700V3.1" 
+ [577] "Pp3c9_17440V3.1"  "Pp3c9_17890V3.1"  "Pp3c9_18040V3.1"  "Pp3c9_18350V3.1"  "Pp3c9_18450V3.1"  "Pp3c9_18580V3.1" 
+ [583] "Pp3c9_19520V3.1"  "Pp3c9_20090V3.1"  "Pp3c9_20170V3.1"  "Pp3c9_21290V3.1"  "Pp3c9_21580V3.1"  "Pp3c9_21830V3.1" 
+ [589] "Pp3c9_23190V3.1"  "Pp3c9_24180V3.1"  "Pp3c9_24230V3.1"  "Pp3c9_24710V3.1"  "Pp3c9_25200V3.1"  "Pp3c9_25700V3.1" 
+ [595] "Pp3c9_25950V3.1"  "Pp3c10_300V3.1"   "Pp3c10_380V3.1"   "Pp3c10_1790V3.1"  "Pp3c10_1870V3.1"  "Pp3c10_2340V3.1" 
+ [601] "Pp3c10_2350V3.1"  "Pp3c10_2381V3.1"  "Pp3c10_2540V3.1"  "Pp3c10_2910V3.1"  "Pp3c10_2940V3.1"  "Pp3c10_2970V3.1" 
+ [607] "Pp3c10_3020V3.1"  "Pp3c10_3320V3.1"  "Pp3c10_3950V3.1"  "Pp3c10_4440V3.1"  "Pp3c10_4900V3.1"  "Pp3c10_5201V3.1" 
+ [613] "Pp3c10_5660V3.1"  "Pp3c10_5750V3.1"  "Pp3c10_5790V3.1"  "Pp3c10_6390V3.1"  "Pp3c10_6410V3.1"  "Pp3c10_6880V3.1" 
+ [619] "Pp3c10_7580V3.1"  "Pp3c10_7690V3.1"  "Pp3c10_7880V3.1"  "Pp3c10_8680V3.1"  "Pp3c10_8980V3.1"  "Pp3c10_10220V3.1"
+ [625] "Pp3c10_10290V3.1" "Pp3c10_10460V3.1" "Pp3c10_10490V3.1" "Pp3c10_10600V3.1" "Pp3c10_10670V3.1" "Pp3c10_12080V3.1"
+ [631] "Pp3c10_12250V3.1" "Pp3c10_12450V3.1" "Pp3c10_13060V3.1" "Pp3c10_13170V3.1" "Pp3c10_14590V3.1" "Pp3c10_15390V3.1"
+ [637] "Pp3c10_15580V3.1" "Pp3c10_16330V3.1" "Pp3c10_16800V3.1" "Pp3c10_18310V3.1" "Pp3c10_18330V3.1" "Pp3c10_19260V3.1"
+ [643] "Pp3c10_19330V3.1" "Pp3c10_20290V3.1" "Pp3c10_20350V3.1" "Pp3c10_21250V3.1" "Pp3c10_21510V3.1" "Pp3c10_21693V3.1"
+ [649] "Pp3c10_21790V3.1" "Pp3c10_22080V3.1" "Pp3c10_23130V3.1" "Pp3c10_24000V3.1" "Pp3c10_25371V3.1" "Pp3c10_25410V3.1"
+ [655] "Pp3c10_25450V3.1" "Pp3c10_25590V3.1" "Pp3c11_470V3.1"   "Pp3c11_980V3.1"   "Pp3c11_2824V3.1"  "Pp3c11_3540V3.1" 
+ [661] "Pp3c11_3710V3.1"  "Pp3c11_4100V3.1"  "Pp3c11_4850V3.1"  "Pp3c11_4920V3.1"  "Pp3c11_5590V3.1"  "Pp3c11_6700V3.1" 
+ [667] "Pp3c11_7910V3.1"  "Pp3c11_8450V3.1"  "Pp3c11_8510V3.1"  "Pp3c11_8660V3.1"  "Pp3c11_8680V3.1"  "Pp3c11_8730V3.1" 
+ [673] "Pp3c11_8830V3.1"  "Pp3c11_8960V3.1"  "Pp3c11_9560V3.1"  "Pp3c11_9590V3.1"  "Pp3c11_10350V3.1" "Pp3c11_10680V3.1"
+ [679] "Pp3c11_11040V3.1" "Pp3c11_11470V3.1" "Pp3c11_11630V3.1" "Pp3c11_12080V3.1" "Pp3c11_14140V3.1" "Pp3c11_14370V3.1"
+ [685] "Pp3c11_14630V3.1" "Pp3c11_15220V3.1" "Pp3c11_15790V3.1" "Pp3c11_16051V3.1" "Pp3c11_16970V3.1" "Pp3c11_18080V3.1"
+ [691] "Pp3c11_18230V3.1" "Pp3c11_18420V3.1" "Pp3c11_19850V3.1" "Pp3c11_20170V3.1" "Pp3c11_21460V3.1" "Pp3c11_21590V3.1"
+ [697] "Pp3c11_21830V3.1" "Pp3c11_22600V3.1" "Pp3c11_23260V3.1" "Pp3c11_23670V3.1" "Pp3c11_23910V3.1" "Pp3c11_23950V3.1"
+ [703] "Pp3c11_24060V3.1" "Pp3c11_24130V3.1" "Pp3c11_24300V3.1" "Pp3c11_26180V3.1" "Pp3c11_26420V3.1" "Pp3c12_350V3.1"  
+ [709] "Pp3c12_710V3.1"   "Pp3c12_1790V3.1"  "Pp3c12_2140V3.1"  "Pp3c12_2540V3.1"  "Pp3c12_4540V3.1"  "Pp3c12_4560V3.1" 
+ [715] "Pp3c12_5390V3.1"  "Pp3c12_6520V3.1"  "Pp3c12_6700V3.1"  "Pp3c12_7590V3.1"  "Pp3c12_8330V3.1"  "Pp3c12_8960V3.1" 
+ [721] "Pp3c12_8990V3.1"  "Pp3c12_9050V3.1"  "Pp3c12_9200V3.1"  "Pp3c12_9240V3.1"  "Pp3c12_9360V3.1"  "Pp3c12_9500V3.1" 
+ [727] "Pp3c12_9890V3.1"  "Pp3c12_10120V3.1" "Pp3c12_10330V3.1" "Pp3c12_10360V3.1" "Pp3c12_10640V3.1" "Pp3c12_10890V3.1"
+ [733] "Pp3c12_11230V3.1" "Pp3c12_11700V3.1" "Pp3c12_11880V3.1" "Pp3c12_13250V3.1" "Pp3c12_13870V3.1" "Pp3c12_14030V3.1"
+ [739] "Pp3c12_14210V3.1" "Pp3c12_15000V3.1" "Pp3c12_16890V3.1" "Pp3c12_17320V3.1" "Pp3c12_18290V3.1" "Pp3c12_19290V3.1"
+ [745] "Pp3c12_19890V3.1" "Pp3c12_20550V3.1" "Pp3c12_21260V3.1" "Pp3c12_21300V3.1" "Pp3c12_22320V3.1" "Pp3c12_22830V3.1"
+ [751] "Pp3c12_22990V3.1" "Pp3c12_23490V3.1" "Pp3c12_24350V3.1" "Pp3c12_24890V3.1" "Pp3c12_25380V3.1" "Pp3c12_25460V3.1"
+ [757] "Pp3c13_300V3.1"   "Pp3c13_910V3.1"   "Pp3c13_1540V3.1"  "Pp3c13_1900V3.1"  "Pp3c13_2000V3.1"  "Pp3c13_2320V3.1" 
+ [763] "Pp3c13_3830V3.1"  "Pp3c13_4300V3.1"  "Pp3c13_4760V3.1"  "Pp3c13_5410V3.1"  "Pp3c13_5750V3.1"  "Pp3c13_5930V3.1" 
+ [769] "Pp3c13_6570V3.1"  "Pp3c13_6640V3.1"  "Pp3c13_6760V3.1"  "Pp3c13_7010V3.1"  "Pp3c13_7900V3.1"  "Pp3c13_10830V3.1"
+ [775] "Pp3c13_11470V3.1" "Pp3c13_11650V3.1" "Pp3c13_11720V3.1" "Pp3c13_12560V3.1" "Pp3c13_12890V3.1" "Pp3c13_13170V3.1"
+ [781] "Pp3c13_14980V3.1" "Pp3c13_15460V3.1" "Pp3c13_15910V3.1" "Pp3c13_15980V3.1" "Pp3c13_16130V3.1" "Pp3c13_16300V3.1"
+ [787] "Pp3c13_16610V3.1" "Pp3c13_16620V3.1" "Pp3c13_16980V3.1" "Pp3c13_17100V3.1" "Pp3c13_17460V3.1" "Pp3c13_17480V3.1"
+ [793] "Pp3c13_17650V3.1" "Pp3c13_19580V3.1" "Pp3c13_20140V3.1" "Pp3c13_20480V3.1" "Pp3c13_20590V3.1" "Pp3c13_20650V3.1"
+ [799] "Pp3c13_20961V3.1" "Pp3c13_20970V3.1" "Pp3c13_21020V3.1" "Pp3c13_21050V3.1" "Pp3c13_21490V3.1" "Pp3c13_21520V3.1"
+ [805] "Pp3c13_21590V3.1" "Pp3c13_21730V3.1" "Pp3c13_22200V3.1" "Pp3c13_22750V3.1" "Pp3c13_23580V3.1" "Pp3c13_23660V3.1"
+ [811] "Pp3c13_24050V3.1" "Pp3c13_24170V3.1" "Pp3c13_24590V3.1" "Pp3c14_380V3.1"   "Pp3c14_1230V3.1"  "Pp3c14_1598V3.1" 
+ [817] "Pp3c14_1600V3.1"  "Pp3c14_2960V3.1"  "Pp3c14_3220V3.1"  "Pp3c14_3550V3.1"  "Pp3c14_4330V3.1"  "Pp3c14_5560V3.1" 
+ [823] "Pp3c14_6460V3.1"  "Pp3c14_6710V3.1"  "Pp3c14_7160V3.1"  "Pp3c14_7930V3.1"  "Pp3c14_7960V3.1"  "Pp3c14_8650V3.1" 
+ [829] "Pp3c14_8740V3.1"  "Pp3c14_8980V3.1"  "Pp3c14_9180V3.1"  "Pp3c14_9410V3.1"  "Pp3c14_10900V3.1" "Pp3c14_10930V3.1"
+ [835] "Pp3c14_11150V3.1" "Pp3c14_11190V3.1" "Pp3c14_11470V3.1" "Pp3c14_12030V3.1" "Pp3c14_12090V3.1" "Pp3c14_12270V3.1"
+ [841] "Pp3c14_12830V3.1" "Pp3c14_12850V3.1" "Pp3c14_14170V3.1" "Pp3c14_14380V3.1" "Pp3c14_14570V3.1" "Pp3c14_15170V3.1"
+ [847] "Pp3c14_15560V3.1" "Pp3c14_15610V3.1" "Pp3c14_19291V3.1" "Pp3c14_19730V3.1" "Pp3c14_20450V3.1" "Pp3c14_20468V3.1"
+ [853] "Pp3c14_20830V3.1" "Pp3c14_21300V3.1" "Pp3c14_22510V3.1" "Pp3c14_22870V3.1" "Pp3c14_22890V3.1" "Pp3c14_24370V3.1"
+ [859] "Pp3c14_24970V3.1" "Pp3c14_25550V3.1" "Pp3c14_25620V3.1" "Pp3c14_26600V3.1" "Pp3c15_70V3.1"    "Pp3c15_750V3.1"  
+ [865] "Pp3c15_830V3.1"   "Pp3c15_1630V3.1"  "Pp3c15_1740V3.1"  "Pp3c15_2490V3.1"  "Pp3c15_4030V3.1"  "Pp3c15_4960V3.1" 
+ [871] "Pp3c15_5110V3.1"  "Pp3c15_5610V3.1"  "Pp3c15_5850V3.1"  "Pp3c15_6160V3.1"  "Pp3c15_6210V3.1"  "Pp3c15_6920V3.1" 
+ [877] "Pp3c15_7930V3.1"  "Pp3c15_8660V3.1"  "Pp3c15_10300V3.1" "Pp3c15_10370V3.1" "Pp3c15_10670V3.1" "Pp3c15_10680V3.1"
+ [883] "Pp3c15_11070V3.1" "Pp3c15_11360V3.1" "Pp3c15_11500V3.1" "Pp3c15_11580V3.1" "Pp3c15_12110V3.1" "Pp3c15_12230V3.1"
+ [889] "Pp3c15_12410V3.1" "Pp3c15_13040V3.1" "Pp3c15_13310V3.1" "Pp3c15_13830V3.1" "Pp3c15_16100V3.1" "Pp3c15_16510V3.1"
+ [895] "Pp3c15_16690V3.1" "Pp3c15_16700V3.1" "Pp3c15_17560V3.1" "Pp3c15_18180V3.1" "Pp3c15_18290V3.1" "Pp3c15_18500V3.1"
+ [901] "Pp3c15_19180V3.1" "Pp3c15_19390V3.1" "Pp3c15_19890V3.1" "Pp3c15_19950V3.1" "Pp3c15_21760V3.1" "Pp3c15_22920V3.1"
+ [907] "Pp3c15_23330V3.1" "Pp3c15_23580V3.1" "Pp3c15_23900V3.1" "Pp3c15_24070V3.1" "Pp3c15_25660V3.1" "Pp3c16_80V3.1"   
+ [913] "Pp3c16_550V3.1"   "Pp3c16_630V3.1"   "Pp3c16_2080V3.1"  "Pp3c16_2270V3.1"  "Pp3c16_2820V3.1"  "Pp3c16_4070V3.1" 
+ [919] "Pp3c16_4520V3.1"  "Pp3c16_4550V3.1"  "Pp3c16_5120V3.1"  "Pp3c16_5650V3.1"  "Pp3c16_6100V3.1"  "Pp3c16_6440V3.1" 
+ [925] "Pp3c16_6730V3.1"  "Pp3c16_6920V3.1"  "Pp3c16_7180V3.1"  "Pp3c16_7230V3.1"  "Pp3c16_7610V3.1"  "Pp3c16_7660V3.1" 
+ [931] "Pp3c16_8630V3.1"  "Pp3c16_9250V3.1"  "Pp3c16_9600V3.1"  "Pp3c16_11400V3.1" "Pp3c16_11740V3.1" "Pp3c16_11920V3.1"
+ [937] "Pp3c16_11960V3.1" "Pp3c16_12600V3.1" "Pp3c16_12660V3.1" "Pp3c16_14400V3.1" "Pp3c16_14590V3.1" "Pp3c16_14640V3.1"
+ [943] "Pp3c16_14660V3.1" "Pp3c16_14730V3.1" "Pp3c16_15130V3.1" "Pp3c16_15230V3.1" "Pp3c16_15490V3.1" "Pp3c16_15880V3.1"
+ [949] "Pp3c16_16040V3.1" "Pp3c16_17390V3.1" "Pp3c16_18060V3.1" "Pp3c16_18760V3.1" "Pp3c16_19110V3.1" "Pp3c16_19250V3.1"
+ [955] "Pp3c16_19530V3.1" "Pp3c16_19690V3.1" "Pp3c16_19830V3.1" "Pp3c16_20090V3.1" "Pp3c16_20400V3.1" "Pp3c16_20540V3.1"
+ [961] "Pp3c16_20660V3.1" "Pp3c16_20890V3.1" "Pp3c16_21110V3.1" "Pp3c16_21250V3.1" "Pp3c16_21290V3.1" "Pp3c16_22268V3.1"
+ [967] "Pp3c16_22280V3.1" "Pp3c16_22550V3.1" "Pp3c16_23780V3.1" "Pp3c16_24530V3.1" "Pp3c16_25330V3.1" "Pp3c16_25540V3.1"
+ [973] "Pp3c16_25860V3.1" "Pp3c17_1110V3.1"  "Pp3c17_1680V3.1"  "Pp3c17_2850V3.1"  "Pp3c17_3610V3.1"  "Pp3c17_3880V3.1" 
+ [979] "Pp3c17_4440V3.1"  "Pp3c17_4820V3.1"  "Pp3c17_5070V3.1"  "Pp3c17_5150V3.1"  "Pp3c17_5160V3.1"  "Pp3c17_5320V3.1" 
+ [985] "Pp3c17_5570V3.1"  "Pp3c17_5760V3.1"  "Pp3c17_6970V3.1"  "Pp3c17_7080V3.1"  "Pp3c17_7790V3.1"  "Pp3c17_7930V3.1" 
+ [991] "Pp3c17_13070V3.1" "Pp3c17_13350V3.1" "Pp3c17_13420V3.1" "Pp3c17_13940V3.1" "Pp3c17_14330V3.1" "Pp3c17_14590V3.1"
+ [997] "Pp3c17_14680V3.1" "Pp3c17_15140V3.1" "Pp3c17_16260V3.1" "Pp3c17_16620V3.1"
+ [ reached getOption("max.print") -- omitted 418 entries ]
+[1] "DEGs intersection with direction check"
+[1] 1418
+   [1] "Pp3c1_1330V3.1"   "Pp3c1_1650V3.1"   "Pp3c1_2210V3.1"   "Pp3c1_2220V3.1"   "Pp3c1_2420V3.1"   "Pp3c1_3040V3.1"  
+   [7] "Pp3c1_3300V3.1"   "Pp3c1_3610V3.1"   "Pp3c1_4470V3.1"   "Pp3c1_5300V3.1"   "Pp3c1_6110V3.1"   "Pp3c1_6272V3.1"  
+  [13] "Pp3c1_6640V3.1"   "Pp3c1_7170V3.1"   "Pp3c1_7380V3.1"   "Pp3c1_7830V3.1"   "Pp3c1_8280V3.1"   "Pp3c1_8490V3.1"  
+  [19] "Pp3c1_9320V3.1"   "Pp3c1_9600V3.1"   "Pp3c1_10000V3.1"  "Pp3c1_10970V3.1"  "Pp3c1_11030V3.1"  "Pp3c1_13170V3.1" 
+  [25] "Pp3c1_13830V3.1"  "Pp3c1_13930V3.1"  "Pp3c1_14230V3.1"  "Pp3c1_14380V3.1"  "Pp3c1_15750V3.1"  "Pp3c1_17080V3.1" 
+  [31] "Pp3c1_17870V3.1"  "Pp3c1_18260V3.1"  "Pp3c1_18830V3.1"  "Pp3c1_19060V3.1"  "Pp3c1_19190V3.1"  "Pp3c1_19210V3.1" 
+  [37] "Pp3c1_20700V3.1"  "Pp3c1_20960V3.1"  "Pp3c1_20980V3.1"  "Pp3c1_21400V3.1"  "Pp3c1_21540V3.1"  "Pp3c1_22120V3.1" 
+  [43] "Pp3c1_22560V3.1"  "Pp3c1_22640V3.1"  "Pp3c1_23000V3.1"  "Pp3c1_23300V3.1"  "Pp3c1_24350V3.1"  "Pp3c1_24570V3.1" 
+  [49] "Pp3c1_25080V3.1"  "Pp3c1_26720V3.1"  "Pp3c1_27020V3.1"  "Pp3c1_27270V3.1"  "Pp3c1_27630V3.1"  "Pp3c1_27990V3.1" 
+  [55] "Pp3c1_28090V3.1"  "Pp3c1_28340V3.1"  "Pp3c1_28680V3.1"  "Pp3c1_29300V3.1"  "Pp3c1_29700V3.1"  "Pp3c1_30410V3.1" 
+  [61] "Pp3c1_30550V3.1"  "Pp3c1_30570V3.1"  "Pp3c1_30790V3.1"  "Pp3c1_31540V3.1"  "Pp3c1_31680V3.1"  "Pp3c1_31830V3.1" 
+  [67] "Pp3c1_31910V3.1"  "Pp3c1_32200V3.1"  "Pp3c1_32560V3.1"  "Pp3c1_33460V3.1"  "Pp3c1_34020V3.1"  "Pp3c1_34210V3.1" 
+  [73] "Pp3c1_34240V3.1"  "Pp3c1_34950V3.1"  "Pp3c1_35321V3.1"  "Pp3c1_35330V3.1"  "Pp3c1_35610V3.1"  "Pp3c1_36100V3.1" 
+  [79] "Pp3c1_36129V3.1"  "Pp3c1_36410V3.1"  "Pp3c1_37550V3.1"  "Pp3c1_38210V3.1"  "Pp3c1_38740V3.1"  "Pp3c1_39540V3.1" 
+  [85] "Pp3c1_39760V3.1"  "Pp3c1_39780V3.1"  "Pp3c1_39900V3.1"  "Pp3c1_40040V3.1"  "Pp3c1_40350V3.1"  "Pp3c1_40570V3.1" 
+  [91] "Pp3c1_40610V3.1"  "Pp3c1_41090V3.1"  "Pp3c1_42570V3.1"  "Pp3c2_1330V3.1"   "Pp3c2_1570V3.1"   "Pp3c2_2070V3.1"  
+  [97] "Pp3c2_2220V3.1"   "Pp3c2_2310V3.1"   "Pp3c2_2520V3.1"   "Pp3c2_3800V3.1"   "Pp3c2_3980V3.1"   "Pp3c2_4100V3.1"  
+ [103] "Pp3c2_4250V3.1"   "Pp3c2_4520V3.1"   "Pp3c2_4940V3.1"   "Pp3c2_6160V3.1"   "Pp3c2_6520V3.1"   "Pp3c2_6690V3.1"  
+ [109] "Pp3c2_6710V3.1"   "Pp3c2_7120V3.1"   "Pp3c2_7230V3.1"   "Pp3c2_7790V3.1"   "Pp3c2_7940V3.1"   "Pp3c2_8570V3.1"  
+ [115] "Pp3c2_9940V3.1"   "Pp3c2_10130V3.1"  "Pp3c2_12080V3.1"  "Pp3c2_12290V3.1"  "Pp3c2_13270V3.1"  "Pp3c2_14090V3.1" 
+ [121] "Pp3c2_14160V3.1"  "Pp3c2_14210V3.1"  "Pp3c2_15140V3.1"  "Pp3c2_17110V3.1"  "Pp3c2_17290V3.1"  "Pp3c2_17700V3.1" 
+ [127] "Pp3c2_17900V3.1"  "Pp3c2_18570V3.1"  "Pp3c2_18870V3.1"  "Pp3c2_19570V3.1"  "Pp3c2_19640V3.1"  "Pp3c2_19700V3.1" 
+ [133] "Pp3c2_19780V3.1"  "Pp3c2_20840V3.1"  "Pp3c2_21710V3.1"  "Pp3c2_22020V3.1"  "Pp3c2_24500V3.1"  "Pp3c2_24620V3.1" 
+ [139] "Pp3c2_25000V3.1"  "Pp3c2_25720V3.1"  "Pp3c2_25890V3.1"  "Pp3c2_25930V3.1"  "Pp3c2_26700V3.1"  "Pp3c2_26720V3.1" 
+ [145] "Pp3c2_28140V3.1"  "Pp3c2_29570V3.1"  "Pp3c2_30370V3.1"  "Pp3c2_30580V3.1"  "Pp3c2_30620V3.1"  "Pp3c2_31200V3.1" 
+ [151] "Pp3c2_31270V3.1"  "Pp3c2_31920V3.1"  "Pp3c2_31970V3.1"  "Pp3c2_32160V3.1"  "Pp3c2_32540V3.1"  "Pp3c2_32600V3.1" 
+ [157] "Pp3c2_32640V3.1"  "Pp3c2_32770V3.1"  "Pp3c2_33980V3.1"  "Pp3c2_34270V3.1"  "Pp3c2_34550V3.1"  "Pp3c2_34630V3.1" 
+ [163] "Pp3c2_34670V3.1"  "Pp3c2_35010V3.1"  "Pp3c2_35740V3.1"  "Pp3c2_35930V3.1"  "Pp3c2_36220V3.1"  "Pp3c2_37670V3.1" 
+ [169] "Pp3c2_37900V3.1"  "Pp3c2_37990V3.1"  "Pp3c3_240V3.1"    "Pp3c3_620V3.1"    "Pp3c3_810V3.1"    "Pp3c3_950V3.1"   
+ [175] "Pp3c3_1090V3.1"   "Pp3c3_1160V3.1"   "Pp3c3_2620V3.1"   "Pp3c3_2980V3.1"   "Pp3c3_4100V3.1"   "Pp3c3_4970V3.1"  
+ [181] "Pp3c3_5420V3.1"   "Pp3c3_5570V3.1"   "Pp3c3_5620V3.1"   "Pp3c3_5720V3.1"   "Pp3c3_5810V3.1"   "Pp3c3_6420V3.1"  
+ [187] "Pp3c3_7930V3.1"   "Pp3c3_8370V3.1"   "Pp3c3_8490V3.1"   "Pp3c3_8880V3.1"   "Pp3c3_9440V3.1"   "Pp3c3_9740V3.1"  
+ [193] "Pp3c3_10350V3.1"  "Pp3c3_10560V3.1"  "Pp3c3_10800V3.1"  "Pp3c3_12510V3.1"  "Pp3c3_12560V3.1"  "Pp3c3_12890V3.1" 
+ [199] "Pp3c3_14080V3.1"  "Pp3c3_14700V3.1"  "Pp3c3_15040V3.1"  "Pp3c3_16280V3.1"  "Pp3c3_16880V3.1"  "Pp3c3_17207V3.1" 
+ [205] "Pp3c3_17340V3.1"  "Pp3c3_17750V3.1"  "Pp3c3_18750V3.1"  "Pp3c3_19490V3.1"  "Pp3c3_20140V3.1"  "Pp3c3_20420V3.1" 
+ [211] "Pp3c3_20980V3.1"  "Pp3c3_21060V3.1"  "Pp3c3_21910V3.1"  "Pp3c3_22090V3.1"  "Pp3c3_22850V3.1"  "Pp3c3_22990V3.1" 
+ [217] "Pp3c3_23240V3.1"  "Pp3c3_23880V3.1"  "Pp3c3_26530V3.1"  "Pp3c3_26890V3.1"  "Pp3c3_27000V3.1"  "Pp3c3_27280V3.1" 
+ [223] "Pp3c3_27720V3.1"  "Pp3c3_27900V3.1"  "Pp3c3_28120V3.1"  "Pp3c3_28300V3.1"  "Pp3c3_28310V3.1"  "Pp3c3_28810V3.1" 
+ [229] "Pp3c3_29330V3.1"  "Pp3c3_29790V3.1"  "Pp3c3_30210V3.1"  "Pp3c3_30330V3.1"  "Pp3c3_30500V3.1"  "Pp3c3_31900V3.1" 
+ [235] "Pp3c3_32210V3.1"  "Pp3c3_32230V3.1"  "Pp3c3_32790V3.1"  "Pp3c3_32860V3.1"  "Pp3c3_34050V3.1"  "Pp3c3_34460V3.1" 
+ [241] "Pp3c3_34790V3.1"  "Pp3c3_35180V3.1"  "Pp3c3_35270V3.1"  "Pp3c3_35850V3.1"  "Pp3c3_37540V3.1"  "Pp3c4_1240V3.1"  
+ [247] "Pp3c4_3170V3.1"   "Pp3c4_3190V3.1"   "Pp3c4_3490V3.1"   "Pp3c4_3520V3.1"   "Pp3c4_3600V3.1"   "Pp3c4_3720V3.1"  
+ [253] "Pp3c4_3820V3.1"   "Pp3c4_3930V3.1"   "Pp3c4_4820V3.1"   "Pp3c4_5090V3.1"   "Pp3c4_5170V3.1"   "Pp3c4_5680V3.1"  
+ [259] "Pp3c4_5690V3.1"   "Pp3c4_6260V3.1"   "Pp3c4_6500V3.1"   "Pp3c4_6620V3.1"   "Pp3c4_6830V3.1"   "Pp3c4_7300V3.1"  
+ [265] "Pp3c4_7960V3.1"   "Pp3c4_8159V3.1"   "Pp3c4_8171V3.1"   "Pp3c4_8330V3.1"   "Pp3c4_8470V3.1"   "Pp3c4_8610V3.1"  
+ [271] "Pp3c4_9670V3.1"   "Pp3c4_10120V3.1"  "Pp3c4_10695V3.1"  "Pp3c4_11490V3.1"  "Pp3c4_11800V3.1"  "Pp3c4_14550V3.1" 
+ [277] "Pp3c4_15150V3.1"  "Pp3c4_15470V3.1"  "Pp3c4_16570V3.1"  "Pp3c4_16840V3.1"  "Pp3c4_17170V3.1"  "Pp3c4_17240V3.1" 
+ [283] "Pp3c4_17920V3.1"  "Pp3c4_19720V3.1"  "Pp3c4_20080V3.1"  "Pp3c4_20230V3.1"  "Pp3c4_20750V3.1"  "Pp3c4_22140V3.1" 
+ [289] "Pp3c4_22490V3.1"  "Pp3c4_22510V3.1"  "Pp3c4_23110V3.1"  "Pp3c4_23170V3.1"  "Pp3c4_23500V3.1"  "Pp3c4_24130V3.1" 
+ [295] "Pp3c4_24470V3.1"  "Pp3c4_25090V3.1"  "Pp3c4_25460V3.1"  "Pp3c4_26000V3.1"  "Pp3c4_26620V3.1"  "Pp3c4_26900V3.1" 
+ [301] "Pp3c4_26990V3.1"  "Pp3c4_28370V3.1"  "Pp3c4_29000V3.1"  "Pp3c4_30520V3.1"  "Pp3c4_30547V3.1"  "Pp3c4_30860V3.1" 
+ [307] "Pp3c4_30870V3.1"  "Pp3c4_30950V3.1"  "Pp3c4_31590V3.1"  "Pp3c4_31920V3.1"  "Pp3c4_32350V3.1"  "Pp3c5_570V3.1"   
+ [313] "Pp3c5_690V3.1"    "Pp3c5_880V3.1"    "Pp3c5_889V3.1"    "Pp3c5_960V3.1"    "Pp3c5_1370V3.1"   "Pp3c5_1730V3.1"  
+ [319] "Pp3c5_1800V3.1"   "Pp3c5_2190V3.1"   "Pp3c5_2900V3.1"   "Pp3c5_3300V3.1"   "Pp3c5_3340V3.1"   "Pp3c5_3660V3.1"  
+ [325] "Pp3c5_4110V3.1"   "Pp3c5_4140V3.1"   "Pp3c5_4200V3.1"   "Pp3c5_4230V3.1"   "Pp3c5_4350V3.1"   "Pp3c5_4460V3.1"  
+ [331] "Pp3c5_4840V3.1"   "Pp3c5_5090V3.1"   "Pp3c5_5150V3.1"   "Pp3c5_5410V3.1"   "Pp3c5_5590V3.1"   "Pp3c5_6270V3.1"  
+ [337] "Pp3c5_6300V3.1"   "Pp3c5_7360V3.1"   "Pp3c5_7570V3.1"   "Pp3c5_7940V3.1"   "Pp3c5_8220V3.1"   "Pp3c5_8240V3.1"  
+ [343] "Pp3c5_8580V3.1"   "Pp3c5_9420V3.1"   "Pp3c5_9550V3.1"   "Pp3c5_9590V3.1"   "Pp3c5_10250V3.1"  "Pp3c5_10280V3.1" 
+ [349] "Pp3c5_10730V3.1"  "Pp3c5_11200V3.1"  "Pp3c5_11800V3.1"  "Pp3c5_11880V3.1"  "Pp3c5_12030V3.1"  "Pp3c5_12180V3.1" 
+ [355] "Pp3c5_12420V3.1"  "Pp3c5_12660V3.1"  "Pp3c5_12820V3.1"  "Pp3c5_13160V3.1"  "Pp3c5_14810V3.1"  "Pp3c5_15500V3.1" 
+ [361] "Pp3c5_15580V3.1"  "Pp3c5_16520V3.1"  "Pp3c5_16770V3.1"  "Pp3c5_17290V3.1"  "Pp3c5_19200V3.1"  "Pp3c5_19220V3.1" 
+ [367] "Pp3c5_19300V3.1"  "Pp3c5_19460V3.1"  "Pp3c5_20080V3.1"  "Pp3c5_20140V3.1"  "Pp3c5_20690V3.1"  "Pp3c5_20800V3.1" 
+ [373] "Pp3c5_20920V3.1"  "Pp3c5_21520V3.1"  "Pp3c5_21897V3.1"  "Pp3c5_22280V3.1"  "Pp3c5_22420V3.1"  "Pp3c5_24610V3.1" 
+ [379] "Pp3c5_24720V3.1"  "Pp3c5_24760V3.1"  "Pp3c5_24940V3.1"  "Pp3c5_25650V3.1"  "Pp3c5_28020V3.1"  "Pp3c5_28350V3.1" 
+ [385] "Pp3c5_28500V3.1"  "Pp3c6_80V3.1"     "Pp3c6_130V3.1"    "Pp3c6_170V3.1"    "Pp3c6_240V3.1"    "Pp3c6_1620V3.1"  
+ [391] "Pp3c6_2090V3.1"   "Pp3c6_2530V3.1"   "Pp3c6_3710V3.1"   "Pp3c6_3770V3.1"   "Pp3c6_3810V3.1"   "Pp3c6_5150V3.1"  
+ [397] "Pp3c6_5290V3.1"   "Pp3c6_5350V3.1"   "Pp3c6_5430V3.1"   "Pp3c6_5850V3.1"   "Pp3c6_6340V3.1"   "Pp3c6_6560V3.1"  
+ [403] "Pp3c6_7400V3.1"   "Pp3c6_9090V3.1"   "Pp3c6_10040V3.1"  "Pp3c6_10090V3.1"  "Pp3c6_10610V3.1"  "Pp3c6_11980V3.1" 
+ [409] "Pp3c6_12140V3.1"  "Pp3c6_12142V3.1"  "Pp3c6_12510V3.1"  "Pp3c6_12520V3.1"  "Pp3c6_12570V3.1"  "Pp3c6_12850V3.1" 
+ [415] "Pp3c6_14200V3.1"  "Pp3c6_14770V3.1"  "Pp3c6_14880V3.1"  "Pp3c6_15020V3.1"  "Pp3c6_15170V3.1"  "Pp3c6_15360V3.1" 
+ [421] "Pp3c6_17010V3.1"  "Pp3c6_17399V3.1"  "Pp3c6_17900V3.1"  "Pp3c6_18190V3.1"  "Pp3c6_18710V3.1"  "Pp3c6_19000V3.1" 
+ [427] "Pp3c6_19150V3.1"  "Pp3c6_19880V3.1"  "Pp3c6_20300V3.1"  "Pp3c6_20610V3.1"  "Pp3c6_20660V3.1"  "Pp3c6_20960V3.1" 
+ [433] "Pp3c6_21160V3.1"  "Pp3c6_21500V3.1"  "Pp3c6_21940V3.1"  "Pp3c6_22090V3.1"  "Pp3c6_22340V3.1"  "Pp3c6_22780V3.1" 
+ [439] "Pp3c6_22830V3.1"  "Pp3c6_23000V3.1"  "Pp3c6_23040V3.1"  "Pp3c6_23230V3.1"  "Pp3c6_23490V3.1"  "Pp3c6_23830V3.1" 
+ [445] "Pp3c6_24490V3.1"  "Pp3c6_25270V3.1"  "Pp3c6_25350V3.1"  "Pp3c6_26460V3.1"  "Pp3c6_26510V3.1"  "Pp3c6_26514V3.1" 
+ [451] "Pp3c6_29090V3.1"  "Pp3c6_29390V3.1"  "Pp3c7_650V3.1"    "Pp3c7_1080V3.1"   "Pp3c7_1880V3.1"   "Pp3c7_2130V3.1"  
+ [457] "Pp3c7_2490V3.1"   "Pp3c7_3310V3.1"   "Pp3c7_3320V3.1"   "Pp3c7_5230V3.1"   "Pp3c7_6750V3.1"   "Pp3c7_7150V3.1"  
+ [463] "Pp3c7_7269V3.1"   "Pp3c7_7280V3.1"   "Pp3c7_7300V3.1"   "Pp3c7_7830V3.1"   "Pp3c7_7930V3.1"   "Pp3c7_10610V3.1" 
+ [469] "Pp3c7_12150V3.1"  "Pp3c7_12220V3.1"  "Pp3c7_12850V3.1"  "Pp3c7_13340V3.1"  "Pp3c7_13580V3.1"  "Pp3c7_14300V3.1" 
+ [475] "Pp3c7_14450V3.1"  "Pp3c7_14650V3.1"  "Pp3c7_14800V3.1"  "Pp3c7_15410V3.1"  "Pp3c7_17220V3.1"  "Pp3c7_18311V3.1" 
+ [481] "Pp3c7_18930V3.1"  "Pp3c7_19260V3.1"  "Pp3c7_20230V3.1"  "Pp3c7_20320V3.1"  "Pp3c7_20720V3.1"  "Pp3c7_20852V3.1" 
+ [487] "Pp3c7_21160V3.1"  "Pp3c7_21310V3.1"  "Pp3c7_22640V3.1"  "Pp3c7_22920V3.1"  "Pp3c7_23680V3.1"  "Pp3c7_23810V3.1" 
+ [493] "Pp3c7_25080V3.1"  "Pp3c7_25280V3.1"  "Pp3c7_25640V3.1"  "Pp3c7_26760V3.1"  "Pp3c8_870V3.1"    "Pp3c8_970V3.1"   
+ [499] "Pp3c8_1800V3.1"   "Pp3c8_1940V3.1"   "Pp3c8_2660V3.1"   "Pp3c8_2888V3.1"   "Pp3c8_3520V3.1"   "Pp3c8_3600V3.1"  
+ [505] "Pp3c8_5640V3.1"   "Pp3c8_6290V3.1"   "Pp3c8_6520V3.1"   "Pp3c8_6920V3.1"   "Pp3c8_7680V3.1"   "Pp3c8_8000V3.1"  
+ [511] "Pp3c8_8150V3.1"   "Pp3c8_8720V3.1"   "Pp3c8_9250V3.1"   "Pp3c8_11120V3.1"  "Pp3c8_11160V3.1"  "Pp3c8_13280V3.1" 
+ [517] "Pp3c8_13540V3.1"  "Pp3c8_13570V3.1"  "Pp3c8_13580V3.1"  "Pp3c8_14190V3.1"  "Pp3c8_15360V3.1"  "Pp3c8_15610V3.1" 
+ [523] "Pp3c8_16580V3.1"  "Pp3c8_16760V3.1"  "Pp3c8_17140V3.1"  "Pp3c8_17430V3.1"  "Pp3c8_17580V3.1"  "Pp3c8_17810V3.1" 
+ [529] "Pp3c8_17920V3.1"  "Pp3c8_17940V3.1"  "Pp3c8_18580V3.1"  "Pp3c8_18880V3.1"  "Pp3c8_19540V3.1"  "Pp3c8_19800V3.1" 
+ [535] "Pp3c8_20150V3.1"  "Pp3c8_20410V3.1"  "Pp3c8_20549V3.1"  "Pp3c8_21100V3.1"  "Pp3c8_21260V3.1"  "Pp3c8_21600V3.1" 
+ [541] "Pp3c8_21770V3.1"  "Pp3c8_21830V3.1"  "Pp3c8_22210V3.1"  "Pp3c8_24120V3.1"  "Pp3c8_24460V3.1"  "Pp3c8_24840V3.1" 
+ [547] "Pp3c8_25010V3.1"  "Pp3c9_1000V3.1"   "Pp3c9_2020V3.1"   "Pp3c9_2340V3.1"   "Pp3c9_3300V3.1"   "Pp3c9_3440V3.1"  
+ [553] "Pp3c9_4170V3.1"   "Pp3c9_4460V3.1"   "Pp3c9_4500V3.1"   "Pp3c9_4940V3.1"   "Pp3c9_5310V3.1"   "Pp3c9_5710V3.1"  
+ [559] "Pp3c9_6180V3.1"   "Pp3c9_6250V3.1"   "Pp3c9_6540V3.1"   "Pp3c9_6850V3.1"   "Pp3c9_7400V3.1"   "Pp3c9_7970V3.1"  
+ [565] "Pp3c9_8580V3.1"   "Pp3c9_9200V3.1"   "Pp3c9_10730V3.1"  "Pp3c9_11060V3.1"  "Pp3c9_11700V3.1"  "Pp3c9_12580V3.1" 
+ [571] "Pp3c9_12590V3.1"  "Pp3c9_13280V3.1"  "Pp3c9_13730V3.1"  "Pp3c9_14600V3.1"  "Pp3c9_14900V3.1"  "Pp3c9_16700V3.1" 
+ [577] "Pp3c9_17440V3.1"  "Pp3c9_17890V3.1"  "Pp3c9_18040V3.1"  "Pp3c9_18350V3.1"  "Pp3c9_18450V3.1"  "Pp3c9_18580V3.1" 
+ [583] "Pp3c9_19520V3.1"  "Pp3c9_20090V3.1"  "Pp3c9_20170V3.1"  "Pp3c9_21290V3.1"  "Pp3c9_21580V3.1"  "Pp3c9_21830V3.1" 
+ [589] "Pp3c9_23190V3.1"  "Pp3c9_24180V3.1"  "Pp3c9_24230V3.1"  "Pp3c9_24710V3.1"  "Pp3c9_25200V3.1"  "Pp3c9_25700V3.1" 
+ [595] "Pp3c9_25950V3.1"  "Pp3c10_300V3.1"   "Pp3c10_380V3.1"   "Pp3c10_1790V3.1"  "Pp3c10_1870V3.1"  "Pp3c10_2340V3.1" 
+ [601] "Pp3c10_2350V3.1"  "Pp3c10_2381V3.1"  "Pp3c10_2540V3.1"  "Pp3c10_2910V3.1"  "Pp3c10_2940V3.1"  "Pp3c10_2970V3.1" 
+ [607] "Pp3c10_3020V3.1"  "Pp3c10_3320V3.1"  "Pp3c10_3950V3.1"  "Pp3c10_4440V3.1"  "Pp3c10_4900V3.1"  "Pp3c10_5201V3.1" 
+ [613] "Pp3c10_5660V3.1"  "Pp3c10_5750V3.1"  "Pp3c10_5790V3.1"  "Pp3c10_6390V3.1"  "Pp3c10_6410V3.1"  "Pp3c10_6880V3.1" 
+ [619] "Pp3c10_7580V3.1"  "Pp3c10_7690V3.1"  "Pp3c10_7880V3.1"  "Pp3c10_8680V3.1"  "Pp3c10_8980V3.1"  "Pp3c10_10220V3.1"
+ [625] "Pp3c10_10290V3.1" "Pp3c10_10460V3.1" "Pp3c10_10490V3.1" "Pp3c10_10600V3.1" "Pp3c10_10670V3.1" "Pp3c10_12080V3.1"
+ [631] "Pp3c10_12250V3.1" "Pp3c10_12450V3.1" "Pp3c10_13060V3.1" "Pp3c10_13170V3.1" "Pp3c10_14590V3.1" "Pp3c10_15390V3.1"
+ [637] "Pp3c10_15580V3.1" "Pp3c10_16330V3.1" "Pp3c10_16800V3.1" "Pp3c10_18310V3.1" "Pp3c10_18330V3.1" "Pp3c10_19260V3.1"
+ [643] "Pp3c10_19330V3.1" "Pp3c10_20290V3.1" "Pp3c10_20350V3.1" "Pp3c10_21250V3.1" "Pp3c10_21510V3.1" "Pp3c10_21693V3.1"
+ [649] "Pp3c10_21790V3.1" "Pp3c10_22080V3.1" "Pp3c10_23130V3.1" "Pp3c10_24000V3.1" "Pp3c10_25371V3.1" "Pp3c10_25410V3.1"
+ [655] "Pp3c10_25450V3.1" "Pp3c10_25590V3.1" "Pp3c11_470V3.1"   "Pp3c11_980V3.1"   "Pp3c11_2824V3.1"  "Pp3c11_3540V3.1" 
+ [661] "Pp3c11_3710V3.1"  "Pp3c11_4100V3.1"  "Pp3c11_4850V3.1"  "Pp3c11_4920V3.1"  "Pp3c11_5590V3.1"  "Pp3c11_6700V3.1" 
+ [667] "Pp3c11_7910V3.1"  "Pp3c11_8450V3.1"  "Pp3c11_8510V3.1"  "Pp3c11_8660V3.1"  "Pp3c11_8680V3.1"  "Pp3c11_8730V3.1" 
+ [673] "Pp3c11_8830V3.1"  "Pp3c11_8960V3.1"  "Pp3c11_9560V3.1"  "Pp3c11_9590V3.1"  "Pp3c11_10350V3.1" "Pp3c11_10680V3.1"
+ [679] "Pp3c11_11040V3.1" "Pp3c11_11470V3.1" "Pp3c11_11630V3.1" "Pp3c11_12080V3.1" "Pp3c11_14140V3.1" "Pp3c11_14370V3.1"
+ [685] "Pp3c11_14630V3.1" "Pp3c11_15220V3.1" "Pp3c11_15790V3.1" "Pp3c11_16051V3.1" "Pp3c11_16970V3.1" "Pp3c11_18080V3.1"
+ [691] "Pp3c11_18230V3.1" "Pp3c11_18420V3.1" "Pp3c11_19850V3.1" "Pp3c11_20170V3.1" "Pp3c11_21460V3.1" "Pp3c11_21590V3.1"
+ [697] "Pp3c11_21830V3.1" "Pp3c11_22600V3.1" "Pp3c11_23260V3.1" "Pp3c11_23670V3.1" "Pp3c11_23910V3.1" "Pp3c11_23950V3.1"
+ [703] "Pp3c11_24060V3.1" "Pp3c11_24130V3.1" "Pp3c11_24300V3.1" "Pp3c11_26180V3.1" "Pp3c11_26420V3.1" "Pp3c12_350V3.1"  
+ [709] "Pp3c12_710V3.1"   "Pp3c12_1790V3.1"  "Pp3c12_2140V3.1"  "Pp3c12_2540V3.1"  "Pp3c12_4540V3.1"  "Pp3c12_4560V3.1" 
+ [715] "Pp3c12_5390V3.1"  "Pp3c12_6520V3.1"  "Pp3c12_6700V3.1"  "Pp3c12_7590V3.1"  "Pp3c12_8330V3.1"  "Pp3c12_8960V3.1" 
+ [721] "Pp3c12_8990V3.1"  "Pp3c12_9050V3.1"  "Pp3c12_9200V3.1"  "Pp3c12_9240V3.1"  "Pp3c12_9360V3.1"  "Pp3c12_9500V3.1" 
+ [727] "Pp3c12_9890V3.1"  "Pp3c12_10120V3.1" "Pp3c12_10330V3.1" "Pp3c12_10360V3.1" "Pp3c12_10640V3.1" "Pp3c12_10890V3.1"
+ [733] "Pp3c12_11230V3.1" "Pp3c12_11700V3.1" "Pp3c12_11880V3.1" "Pp3c12_13250V3.1" "Pp3c12_13870V3.1" "Pp3c12_14030V3.1"
+ [739] "Pp3c12_14210V3.1" "Pp3c12_15000V3.1" "Pp3c12_16890V3.1" "Pp3c12_17320V3.1" "Pp3c12_18290V3.1" "Pp3c12_19290V3.1"
+ [745] "Pp3c12_19890V3.1" "Pp3c12_20550V3.1" "Pp3c12_21260V3.1" "Pp3c12_21300V3.1" "Pp3c12_22320V3.1" "Pp3c12_22830V3.1"
+ [751] "Pp3c12_22990V3.1" "Pp3c12_23490V3.1" "Pp3c12_24350V3.1" "Pp3c12_24890V3.1" "Pp3c12_25380V3.1" "Pp3c12_25460V3.1"
+ [757] "Pp3c13_300V3.1"   "Pp3c13_910V3.1"   "Pp3c13_1540V3.1"  "Pp3c13_1900V3.1"  "Pp3c13_2000V3.1"  "Pp3c13_2320V3.1" 
+ [763] "Pp3c13_3830V3.1"  "Pp3c13_4300V3.1"  "Pp3c13_4760V3.1"  "Pp3c13_5410V3.1"  "Pp3c13_5750V3.1"  "Pp3c13_5930V3.1" 
+ [769] "Pp3c13_6570V3.1"  "Pp3c13_6640V3.1"  "Pp3c13_6760V3.1"  "Pp3c13_7010V3.1"  "Pp3c13_7900V3.1"  "Pp3c13_10830V3.1"
+ [775] "Pp3c13_11470V3.1" "Pp3c13_11650V3.1" "Pp3c13_11720V3.1" "Pp3c13_12560V3.1" "Pp3c13_12890V3.1" "Pp3c13_13170V3.1"
+ [781] "Pp3c13_14980V3.1" "Pp3c13_15460V3.1" "Pp3c13_15910V3.1" "Pp3c13_15980V3.1" "Pp3c13_16130V3.1" "Pp3c13_16300V3.1"
+ [787] "Pp3c13_16610V3.1" "Pp3c13_16620V3.1" "Pp3c13_16980V3.1" "Pp3c13_17100V3.1" "Pp3c13_17460V3.1" "Pp3c13_17480V3.1"
+ [793] "Pp3c13_17650V3.1" "Pp3c13_19580V3.1" "Pp3c13_20140V3.1" "Pp3c13_20480V3.1" "Pp3c13_20590V3.1" "Pp3c13_20650V3.1"
+ [799] "Pp3c13_20961V3.1" "Pp3c13_20970V3.1" "Pp3c13_21020V3.1" "Pp3c13_21050V3.1" "Pp3c13_21490V3.1" "Pp3c13_21520V3.1"
+ [805] "Pp3c13_21590V3.1" "Pp3c13_21730V3.1" "Pp3c13_22200V3.1" "Pp3c13_22750V3.1" "Pp3c13_23580V3.1" "Pp3c13_23660V3.1"
+ [811] "Pp3c13_24050V3.1" "Pp3c13_24170V3.1" "Pp3c13_24590V3.1" "Pp3c14_380V3.1"   "Pp3c14_1230V3.1"  "Pp3c14_1598V3.1" 
+ [817] "Pp3c14_1600V3.1"  "Pp3c14_2960V3.1"  "Pp3c14_3220V3.1"  "Pp3c14_3550V3.1"  "Pp3c14_4330V3.1"  "Pp3c14_5560V3.1" 
+ [823] "Pp3c14_6460V3.1"  "Pp3c14_6710V3.1"  "Pp3c14_7160V3.1"  "Pp3c14_7930V3.1"  "Pp3c14_7960V3.1"  "Pp3c14_8650V3.1" 
+ [829] "Pp3c14_8740V3.1"  "Pp3c14_8980V3.1"  "Pp3c14_9180V3.1"  "Pp3c14_9410V3.1"  "Pp3c14_10900V3.1" "Pp3c14_10930V3.1"
+ [835] "Pp3c14_11150V3.1" "Pp3c14_11190V3.1" "Pp3c14_11470V3.1" "Pp3c14_12030V3.1" "Pp3c14_12090V3.1" "Pp3c14_12270V3.1"
+ [841] "Pp3c14_12830V3.1" "Pp3c14_12850V3.1" "Pp3c14_14170V3.1" "Pp3c14_14380V3.1" "Pp3c14_14570V3.1" "Pp3c14_15170V3.1"
+ [847] "Pp3c14_15560V3.1" "Pp3c14_15610V3.1" "Pp3c14_19291V3.1" "Pp3c14_19730V3.1" "Pp3c14_20450V3.1" "Pp3c14_20468V3.1"
+ [853] "Pp3c14_20830V3.1" "Pp3c14_21300V3.1" "Pp3c14_22510V3.1" "Pp3c14_22870V3.1" "Pp3c14_22890V3.1" "Pp3c14_24370V3.1"
+ [859] "Pp3c14_24970V3.1" "Pp3c14_25550V3.1" "Pp3c14_25620V3.1" "Pp3c14_26600V3.1" "Pp3c15_70V3.1"    "Pp3c15_750V3.1"  
+ [865] "Pp3c15_830V3.1"   "Pp3c15_1630V3.1"  "Pp3c15_1740V3.1"  "Pp3c15_2490V3.1"  "Pp3c15_4030V3.1"  "Pp3c15_4960V3.1" 
+ [871] "Pp3c15_5110V3.1"  "Pp3c15_5610V3.1"  "Pp3c15_5850V3.1"  "Pp3c15_6160V3.1"  "Pp3c15_6210V3.1"  "Pp3c15_6920V3.1" 
+ [877] "Pp3c15_7930V3.1"  "Pp3c15_8660V3.1"  "Pp3c15_10300V3.1" "Pp3c15_10370V3.1" "Pp3c15_10670V3.1" "Pp3c15_10680V3.1"
+ [883] "Pp3c15_11070V3.1" "Pp3c15_11360V3.1" "Pp3c15_11500V3.1" "Pp3c15_11580V3.1" "Pp3c15_12110V3.1" "Pp3c15_12230V3.1"
+ [889] "Pp3c15_12410V3.1" "Pp3c15_13040V3.1" "Pp3c15_13310V3.1" "Pp3c15_13830V3.1" "Pp3c15_16100V3.1" "Pp3c15_16510V3.1"
+ [895] "Pp3c15_16690V3.1" "Pp3c15_16700V3.1" "Pp3c15_17560V3.1" "Pp3c15_18180V3.1" "Pp3c15_18290V3.1" "Pp3c15_18500V3.1"
+ [901] "Pp3c15_19180V3.1" "Pp3c15_19390V3.1" "Pp3c15_19890V3.1" "Pp3c15_19950V3.1" "Pp3c15_21760V3.1" "Pp3c15_22920V3.1"
+ [907] "Pp3c15_23330V3.1" "Pp3c15_23580V3.1" "Pp3c15_23900V3.1" "Pp3c15_24070V3.1" "Pp3c15_25660V3.1" "Pp3c16_80V3.1"   
+ [913] "Pp3c16_550V3.1"   "Pp3c16_630V3.1"   "Pp3c16_2080V3.1"  "Pp3c16_2270V3.1"  "Pp3c16_2820V3.1"  "Pp3c16_4070V3.1" 
+ [919] "Pp3c16_4520V3.1"  "Pp3c16_4550V3.1"  "Pp3c16_5120V3.1"  "Pp3c16_5650V3.1"  "Pp3c16_6100V3.1"  "Pp3c16_6440V3.1" 
+ [925] "Pp3c16_6730V3.1"  "Pp3c16_6920V3.1"  "Pp3c16_7180V3.1"  "Pp3c16_7230V3.1"  "Pp3c16_7610V3.1"  "Pp3c16_7660V3.1" 
+ [931] "Pp3c16_8630V3.1"  "Pp3c16_9250V3.1"  "Pp3c16_9600V3.1"  "Pp3c16_11400V3.1" "Pp3c16_11740V3.1" "Pp3c16_11920V3.1"
+ [937] "Pp3c16_11960V3.1" "Pp3c16_12600V3.1" "Pp3c16_12660V3.1" "Pp3c16_14400V3.1" "Pp3c16_14590V3.1" "Pp3c16_14640V3.1"
+ [943] "Pp3c16_14660V3.1" "Pp3c16_14730V3.1" "Pp3c16_15130V3.1" "Pp3c16_15230V3.1" "Pp3c16_15490V3.1" "Pp3c16_15880V3.1"
+ [949] "Pp3c16_16040V3.1" "Pp3c16_17390V3.1" "Pp3c16_18060V3.1" "Pp3c16_18760V3.1" "Pp3c16_19110V3.1" "Pp3c16_19250V3.1"
+ [955] "Pp3c16_19530V3.1" "Pp3c16_19690V3.1" "Pp3c16_19830V3.1" "Pp3c16_20090V3.1" "Pp3c16_20400V3.1" "Pp3c16_20540V3.1"
+ [961] "Pp3c16_20660V3.1" "Pp3c16_20890V3.1" "Pp3c16_21110V3.1" "Pp3c16_21250V3.1" "Pp3c16_21290V3.1" "Pp3c16_22268V3.1"
+ [967] "Pp3c16_22280V3.1" "Pp3c16_22550V3.1" "Pp3c16_23780V3.1" "Pp3c16_24530V3.1" "Pp3c16_25330V3.1" "Pp3c16_25540V3.1"
+ [973] "Pp3c16_25860V3.1" "Pp3c17_1110V3.1"  "Pp3c17_1680V3.1"  "Pp3c17_2850V3.1"  "Pp3c17_3610V3.1"  "Pp3c17_3880V3.1" 
+ [979] "Pp3c17_4440V3.1"  "Pp3c17_4820V3.1"  "Pp3c17_5070V3.1"  "Pp3c17_5150V3.1"  "Pp3c17_5160V3.1"  "Pp3c17_5320V3.1" 
+ [985] "Pp3c17_5570V3.1"  "Pp3c17_5760V3.1"  "Pp3c17_6970V3.1"  "Pp3c17_7080V3.1"  "Pp3c17_7790V3.1"  "Pp3c17_7930V3.1" 
+ [991] "Pp3c17_13070V3.1" "Pp3c17_13350V3.1" "Pp3c17_13420V3.1" "Pp3c17_13940V3.1" "Pp3c17_14330V3.1" "Pp3c17_14590V3.1"
+ [997] "Pp3c17_14680V3.1" "Pp3c17_15140V3.1" "Pp3c17_16260V3.1" "Pp3c17_16620V3.1"
+ [ reached getOption("max.print") -- omitted 418 entries ]

runs/RNA-Seq_analysis/DEGs/DEGs_0.9/cop_D_WT_D/NOISeq/cop_D vs. WT_D_1466_NOISeqbio_rpkm_prob_seed_12345.tsv

+cop_D_mean	WT_D_mean	theta	prob	log2FC	length	GC
+Pp3c1_10460V3.1	1.03589090046449	0.0376556189740695	2.49301439479567	0.999999999999997	4.78186309683181	1449	49.97
+Pp3c1_10970V3.1	17.7013777048153	3.91798145883405	1.54336094547833	1	2.17567917473924	1994	49.15
+Pp3c1_11030V3.1	20.6156149279532	10.0097810097034	0.978236993600059	0.996711379161479	1.04232708318352	1812	56.4
+Pp3c1_12610V3.1	2.6793117899601	0.74764003079567	0.978103474002136	0.996692252702674	1.84144675423317	1537	50.1
+Pp3c1_13170V3.1	50.9683961257998	32.1947925609969	1.01005760749718	0.997164576813325	0.662775600844495	1650	54.3
+Pp3c1_13830V3.1	70.1376655088404	32.6623057796245	1.53175902440837	1	1.10256277127862	2077	43.72
+Pp3c1_13930V3.1	16.9913040451855	3.25107903028255	1.42342380784055	0.999798530884117	2.38580604848685	2363	47.44
+Pp3c1_14230V3.1	38.1669615331167	14.6649187480757	1.4640695154367	0.99999999975936	1.3799552605864	1285	46.46
+Pp3c1_14250V3.1	4.00467474042015	0.469446331189837	1.38710221535142	0.996404173332821	3.09265293345769	1704	47.48
+Pp3c1_14380V3.1	33.8077160833772	6.76583792062702	1.76211086790507	0.996201185582151	2.32101203460366	869	48.56
+Pp3c1_15410V3.1	1.15765766186209	0.114125798542738	1.22827840092502	0.998029708813816	3.34251182813155	2960	47.06
+Pp3c1_15840V3.1	373.587245609313	302.653448954287	1.90310359081175	0.999998649383464	0.30377841011596	739	48.85
+Pp3c1_16780V3.1	1.54325835551559	0.0822261968084279	1.70840728078387	0.999335941399234	4.23023769045463	1633	49.91
+Pp3c1_17080V3.1	13.5291343783711	4.56296104128694	1.01977668333804	0.996891348782357	1.56802729452365	2157	51.51
+Pp3c1_17220V3.1	2.56763073992781	0.079709531528167	2.56751083859115	1	5.00954167855492	2619	46.35
+Pp3c1_18260V3.1	5.91151760541907	0.963432536701831	1.37741761778647	0.997852572493779	2.61727299472821	3467	51.51
+Pp3c1_18860V3.1	3.94381909219491	0.280457418519227	1.67701763406805	0.997590959409204	3.81373972496364	1641	50.03
+Pp3c1_19060V3.1	112.401673353862	183.251412432339	-2.01539845191475	1	-0.705160804640996	2458	51.55
+Pp3c1_19190V3.1	1445.07779312355	936.486090281538	8.53202211973777	0.999999999999997	0.625817688417798	1320	52.2
+Pp3c1_19210V3.1	42.1588249181312	15.8271034674504	1.78658802589448	0.999544670715854	1.41343740496977	1041	52.35
+Pp3c1_1940V3.1	695.184710386571	979.583988344698	-1.96688799164821	1	-0.494772840275623	2307	47.77
+Pp3c1_20630V3.1	78.8692718499257	55.2251985233858	1.06344497257199	0.995188823519133	0.514136623462421	1474	51.63
+Pp3c1_20700V3.1	25.2340717343463	9.79552173214134	1.29336285049367	0.999172975019538	1.36517877541532	1592	45.98
+Pp3c1_20960V3.1	18.4786253625162	35.4468077798178	-1.20046507790663	0.99576449673891	-0.939798271373637	4104	47.86
+Pp3c1_21200V3.1	5.38044239249493	2.06927311269491	1.02172110579234	0.996794677009636	1.37860072775361	1821	56.62
+Pp3c1_21400V3.1	20.727761467935	9.65436224125031	0.9702294835229	0.995415123957342	1.10231145414134	3045	45.62
+Pp3c1_21540V3.1	376.122459266758	652.298530954804	-3.02622724121158	0.999999999999991	-0.794329923336559	1896	45.68
+Pp3c1_22066V3.1	1.6239181769311	0.370897657108264	1.21451078640719	0.995171283756484	2.13038588268571	4792	43.66
+Pp3c1_2210V3.1	24.8606396605194	12.3399258710338	1.00234161729073	0.997356899471543	1.01052968930454	2655	57.25
+Pp3c1_22120V3.1	73.0599829407831	39.0918044227653	1.47181803114394	0.999999999993904	0.90221523789623	1691	45.54
+Pp3c1_22410V3.1	3.02469490791602	0.793134360865297	1.0941379322625	0.998286725796941	1.93115243793028	5275	49.27
+Pp3c1_22560V3.1	15.334278770564	7.03272227535318	1.02179138946055	0.99679090327755	1.12460516175251	4804	48.38
+Pp3c1_22640V3.1	10.3521405830509	0.490151441751771	2.09803090119957	0.999999999999998	4.40055773769453	2813	48.24
+Pp3c1_23000V3.1	1.61108504900224	11.0678567774878	-1.99921313448514	0.999999999999999	-2.78027131924831	1653	47.91
+Pp3c1_23300V3.1	21.9419583740523	64.164150461916	-2.07642510070497	1	-1.54807517003812	2981	43.98
+Pp3c1_2420V3.1	23.3022548491879	7.87001946687492	1.22416118435042	0.99731526640916	1.56603045499626	2531	46.42
+Pp3c1_24350V3.1	5.15651872373106	30.3447211695316	-1.99824464718952	0.999999999999999	-2.55697625903102	3896	47.51
+Pp3c1_25080V3.1	8.05527315558215	23.3196265988716	-1.46864334365675	0.995752786752452	-1.53353927095059	1762	49.6
+Pp3c1_25100V3.1	1.21915170457473	0.0940180924806014	1.34703208747153	0.998326167077426	3.69679543778999	1630	50.25
+Pp3c1_26720V3.1	18.993410035751	4.15569334856919	1.9255485087648	0.999999999853168	2.19233784125201	2728	48.06
+Pp3c1_27270V3.1	113.577597094348	257.297381786663	-3.00031976280959	0.999999999999992	-1.17975848172782	677	52.58
+Pp3c1_27990V3.1	69.854187079051	5.56408317150091	4.00651576497998	0.999999999999996	3.65013070330928	2361	48.96
+Pp3c1_28090V3.1	9.15303834174355	3.15912365496799	0.995229031512229	0.997583411654507	1.53472631563685	972	44.03
+Pp3c1_28390V3.1	1414.82631728086	1171.90802222265	1.35262053857937	0.998064407160758	0.271765616496202	778	43.57
+Pp3c1_28680V3.1	181.284873467996	122.54010405958	1.76827291146269	0.996727597249507	0.565004569110024	966	46.17
+Pp3c1_29300V3.1	341.960944657598	99.3953195687656	4.03316587514736	0.999999999999996	1.78258174103128	3612	50.08
+Pp3c1_29700V3.1	49.4930044054076	7.10661321725133	1.84520379935972	0.996630347140864	2.79999053491007	3459	48.8
+Pp3c1_3040V3.1	13.1280013755663	4.96455155575852	1.09967105762713	0.997706899556517	1.40291198394742	2886	47.19
+Pp3c1_30410V3.1	145.638208169838	26.6186934065568	3.21952443620224	1	2.45187723349039	1085	51.06
+Pp3c1_30570V3.1	14.0678750971377	3.64637885210106	1.59716942490637	0.999999999999998	1.94786806338223	1017	50.84
+Pp3c1_30790V3.1	20.8165789064712	6.29839209877225	1.40631442194015	0.997733668191642	1.72467751028172	1332	48.57
+Pp3c1_30900V3.1	1.36634258688994	0.06543530774696	1.69698645281024	0.99767316021213	4.384106150897	2342	44.88
+Pp3c1_31540V3.1	217.538711089665	69.51965053592	2.94620626059602	1	1.64577941680553	2623	48.19
+Pp3c1_31680V3.1	25.1325731879175	60.8207207862756	-1.83077959625176	1	-1.27500452534227	5533	47.77
+Pp3c1_31720V3.1	41.6831590698316	74.0159559505882	-1.11019430332134	0.995628712202065	-0.828371692223238	159	54.09
+Pp3c1_31850V3.1	5.24460559834203	1.40182480665582	1.00559840134258	0.997266497664323	1.90352822469785	396	54.29
+Pp3c1_31910V3.1	124.193300900493	84.3755108489361	1.13143888690752	0.995167147067664	0.55769111843298	1979	46.29
+Pp3c1_32200V3.1	9.50141632203325	0.516572704316465	2.83331347231826	1	4.20109926518188	845	53.61
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+Pp3c9_17890V3.1	29.5272620038994	5.36727338082323	1.55582101031976	1	2.45978630639978	96	45.83
+Pp3c9_19520V3.1	15.0204137730197	0.753110676078506	2.84238042116836	1	4.3179188487425	1071	47.81
+Pp3c9_19800V3.1	3.80586223686433	0.850447454726004	1.41619148869341	0.999287844667778	2.161929334237	1590	44.84
+Pp3c9_2020V3.1	40.4973868795369	75.2376980651606	-1.58546624974861	0.999999999999977	-0.893626889406837	1889	52.04
+Pp3c9_20530V3.1	3.50255514326976	0.981182587837304	1.24853434972687	0.998534234878901	1.8358142272036	1735	45.42
+Pp3c9_21290V3.1	23.0974163502295	7.16071717022855	1.60243372241469	0.999999999999921	1.68955549183615	833	50.3
+Pp3c9_21480V3.1	647.954977760356	523.152708750439	1.76061069003452	0.996235933515116	0.308661441018954	1085	48.48
+Pp3c9_21830V3.1	43.3212433613421	15.0206490598587	1.50179879871473	1	1.52812749553191	955	46.6
+Pp3c9_21990V3.1	4.51539042720515	0.460963599014093	1.70239485983076	0.99856621537732	3.292126002259	3411	50.45
+Pp3c9_2280V3.1	45.5122037208591	12.4837646199231	1.4149674141037	0.999156839490566	1.8662003831618	1861	49.76
+Pp3c9_23190V3.1	8.55400766825023	0.983277594797492	1.3003461528326	0.998277909923335	3.12092982573841	1049	46.14
+Pp3c9_23820V3.1	2.37918896048429	0.383195868265306	1.26840857859587	0.999202134111217	2.63431594767288	2147	49.05
+Pp3c9_24180V3.1	6.07918493813333	0.918070563660757	1.52941241341316	1	2.72720095870472	1323	49.96
+Pp3c9_24320V3.1	3.50512608248803	0.191609779778506	1.67221223405834	0.998391806697243	4.19322323685061	1503	53.76
+Pp3c9_24660V3.1	4.40390144770993	0.0382668572170568	3.10353073512234	1	6.84654295370505	1835	48.61
+Pp3c9_2480V3.1	4.23978754483062	0.0598670313335103	3.02435132008049	1	6.14608643099352	1482	48.52
+Pp3c9_25200V3.1	27.81180382779	10.2864965101853	1.529116500529	1	1.43494562183504	4232	51.58
+Pp3c9_25700V3.1	21.2913701036014	3.39162671234576	2.09130704866376	0.999999999999998	2.65021949195465	2041	52.57
+Pp3c9_25950V3.1	8.55038937436608	0.863424490023062	1.98078596174472	1	3.30784820123238	2542	49.92
+Pp3c9_25990V3.1	384.303167863136	499.535625731664	-1.4333747933881	0.998684183513577	-0.378342702597621	3080	48.25
+Pp3c9_26020V3.1	4.15552184437811	1.09193147264764	1.06730343829747	0.996260061828425	1.92814734136025	2342	47.87
+Pp3c9_3440V3.1	33.1982879998962	1.03607722196792	3.1308528703576	1	5.00190540468674	1448	50.41
+Pp3c9_3490V3.1	6.23408195403038	2.38134749903559	0.974689866118937	0.996141252998588	1.3883989591491	2783	45.6
+Pp3c9_4460V3.1	37.4748116596796	17.0075032007635	1.3128843039633	0.996811943897581	1.1397498668963	1610	47.14
+Pp3c9_5280V3.1	3.2545809354591	0.240263015881298	1.99444482824764	1	3.75978529782741	2500	50.6
+Pp3c9_5310V3.1	142.839130529555	9.76725487030952	5.09585658941877	1	3.87029430365226	2204	52.63
+Pp3c9_560V3.1	1.43498227805672	0.467927453346526	1.01783010279497	0.996965072699629	1.61667614047146	3123	45.79
+Pp3c9_6250V3.1	77.5419154402375	49.4153609582947	1.00941358144763	0.997178482318459	0.650016794052801	1494	49.6
+Pp3c9_6540V3.1	15.9678287867852	3.98561297188679	1.60434348914465	0.999999999999814	2.002294629419	2598	49.88
+Pp3c9_6780V3.1	1.21812277928085	0.013469017993934	3.45460064248783	1	6.49887107524578	4051	45.72
+Pp3c9_7400V3.1	13.8961004770237	5.81977933644618	1.02830851507924	0.996288928225003	1.25564373287732	5914	48.29
+Pp3c9_7970V3.1	22.2118319591068	3.15260343182995	2.09359759709493	0.999999999999997	2.81671277761278	1542	45.85
+Pp3c9_9190V3.1	1.23037842935142	0.0622711224735015	1.7435599014996	0.998783918234821	4.30439502061136	3261	45.54
+Pp3c9_9200V3.1	12.816187959561	4.55610914440002	1.15287406650504	0.995700125342613	1.49209299806071	1319	47.08
+Pp3s104_40V3.1	17.2358162919958	0.994477651020713	2.08758540543711	1	4.1153268668306	791	50.95
+Pp3s123_10V3.1	81.2840084239379	54.5451307270767	0.976945624517728	0.996512655915638	0.575521136508707	2150	46.14
+Pp3s127_20V3.1	13.117682307061	3.39577612127336	1.26446996829071	0.998901237297836	1.94969958813101	2470	48.66
+Pp3s397_10V3.1	2.72318641749725	0.333331634442043	1.68361870847322	0.996760135254688	3.03026560007553	1059	57.51
+Pp3s504_10V3.1	1.08047141137849	0.0725453315096175	1.97643289032741	1	3.89663431372724	1223	46.61
+Pp3s64_90V3.1	10.5117057879566	0.399780359252346	2.38915453183064	1	4.71664539565228	3005	52.31
+Pp3s67_80V3.1	53.8889324612018	33.5843853734814	0.967704335624048	0.995047631253865	0.682198380799574	288	53.12

runs/RNA-Seq_analysis/DEGs/DEGs_0.9/cop_D_WT_D/NOISeq/cop_D vs. WT_D_1494_NOISeqbio_tmm_prob_seed_12345.tsv

+cop_D_mean	WT_D_mean	theta	prob	log2FC	length	GC
+Pp3c1_10000V3.1	584.771608007139	364.233869096047	1.06447228843682	0.997791743671659	0.683008186104075	3195	46.98
+Pp3c1_10460V3.1	8.6793638460361	0.465509266821891	2.09514218523476	0.999935658662125	4.22070751152082	1449	49.97
+Pp3c1_10970V3.1	148.320095356786	33.4056928567127	1.46913532043052	0.999863690967012	2.15054818985967	1994	49.15
+Pp3c1_11030V3.1	173.00594918621	85.3872634855762	0.914106331599489	0.99531631859121	1.01872885284871	1812	56.4
+Pp3c1_12610V3.1	22.5096920165035	6.36904987109499	0.920967286807661	0.995640954578306	1.82139624384761	1537	50.1
+Pp3c1_13830V3.1	588.420958040131	278.21130829113	1.48021776650164	0.999272324970101	1.08066757114496	2077	43.72
+Pp3c1_13870V3.1	3.44931040345673	0.51916746626878	1.07174669779558	0.997873347402471	2.7320360782589	2456	47.03
+Pp3c1_13930V3.1	142.402861466538	27.6695458336747	1.36968635407181	0.997189220392251	2.36360726740533	2363	47.44
+Pp3c1_14230V3.1	320.346478020121	124.900405617248	1.40166336904512	0.99993297385752	1.35885496704926	1285	46.46
+Pp3c1_14250V3.1	33.5392938314335	3.99204847357303	1.33098686384352	0.998690970249252	3.0706511694687	1704	47.48
+Pp3c1_14380V3.1	283.324579539851	57.6568342765085	1.69368690657217	0.996503903469566	2.29689223563526	869	48.56
+Pp3c1_15410V3.1	9.69953168461096	0.968588956010867	1.18343981894217	0.996911061819043	3.32395863406081	2960	47.06
+Pp3c1_15840V3.1	3135.56001703993	2580.55648495682	1.88787341094893	0.996846893821242	0.281040924497191	739	48.85
+Pp3c1_16780V3.1	12.9504293978289	0.753957895555316	1.73354474992349	0.998890850512613	4.10237216489026	1633	49.91
+Pp3c1_17220V3.1	21.5768729157482	0.678825059022747	2.43218819381524	0.999999999999999	4.99030216006401	2619	46.35
+Pp3c1_18260V3.1	49.5796507096698	8.19765211252168	1.31308088605709	0.998199807718116	2.59646543554363	3467	51.51
+Pp3c1_18860V3.1	33.0648870047214	2.38466734358111	1.60665595808469	0.99745386212602	3.79344003909614	1641	50.03
+Pp3c1_19060V3.1	943.475119765747	1563.18476516792	-1.98638285329289	1	-0.72843193359522	2458	51.55
+Pp3c1_19190V3.1	12131.5886768868	7984.49299467406	7.0945609462626	1	0.603495782812828	1320	52.2
+Pp3c1_19210V3.1	353.914341955897	134.938794831813	1.68623398513409	0.998248763360522	1.3910950444618	1041	52.35
+Pp3c1_1940V3.1	5841.6823468727	8354.70211800836	-1.9326875735439	0.999999999999991	-0.516204479880022	2307	47.77
+Pp3c1_20670V3.1	7.83234660569141	0.650152607293144	1.96032315494262	0.999999999999965	3.59059431000553	1432	45.25
+Pp3c1_20700V3.1	211.717110249419	83.45435206914	1.23012026568624	0.996585757460617	1.3430786758068	1592	45.98
+Pp3c1_21400V3.1	173.832427815662	82.2486160217967	0.918956404075949	0.995600812647775	1.07963392856809	3045	45.62
+Pp3c1_21540V3.1	3158.95366354751	5564.764540293	-2.91430786831223	0.999999999999996	-0.816873869298389	1896	45.68
+Pp3c1_22066V3.1	13.627914770907	3.16099072910878	1.13833468489225	0.99857358625268	2.1081161208771	4792	43.66
+Pp3c1_22120V3.1	613.533671617531	333.133418632967	1.39059293988261	0.999636188149293	0.881042436498397	1691	45.54
+Pp3c1_22410V3.1	25.346735389366	6.75901395508617	1.03284538908769	0.996394687135631	1.90691524476581	5275	49.27
+Pp3c1_22640V3.1	86.649062868604	4.18540480525696	2.00881128396767	0.999999765921803	4.37174507670536	2813	48.24
+Pp3c1_23000V3.1	13.5227687556107	94.4689037619581	-1.89894964505596	0.999999999999998	-2.80444894660397	1653	47.91
+Pp3c1_23300V3.1	184.355344295838	547.372714094101	-2.01521310500039	1	-1.57003428032059	2981	43.98
+Pp3c1_23610V3.1	7.73033138075199	1.64708467124612	0.921964028083939	0.995639818286592	2.23061553913633	2671	45.83
+Pp3c1_2420V3.1	195.441593129609	67.1253980549688	1.16583732450621	0.9950384738248	1.54180688535497	2531	46.42
+Pp3c1_24350V3.1	43.4047760716015	258.80411246338	-1.93784967401867	0.99999999999999	-2.5759348379394	3896	47.51
+Pp3c1_25100V3.1	10.2026095146665	0.859709311864543	1.3438077632984	0.998181746421359	3.56894545351161	1630	50.25
+Pp3c1_25450V3.1	29.2925245577693	7.53778061562057	1.14036642875038	0.998239404260544	1.95832082473011	3865	50.56
+Pp3c1_26720V3.1	159.389328444229	35.4161368147443	1.82264890784722	0.99999993954663	2.17007628325141	2728	48.06
+Pp3c1_27270V3.1	953.661219869682	2194.93553967137	-2.93735950357077	1	-1.20262981459876	677	52.58
+Pp3c1_27440V3.1	14.1909086793465	4.21727494206711	1.0914395761634	0.997157194590425	1.75058398651149	1470	49.8
+Pp3c1_27990V3.1	586.062949338558	47.4023370684594	3.88934889551211	0.999999999999972	3.62802553871503	2361	48.96
+Pp3c1_28390V3.1	11882.7351981601	9997.49028929791	1.13557916449857	0.998939456271968	0.249229077733317	778	43.57
+Pp3c1_28680V3.1	1522.0983274665	1044.5135839667	1.65525413589992	0.999998407073972	0.543230305001213	966	46.17
+Pp3c1_29300V3.1	2868.63973165802	846.367633457269	4.06474627065069	1	1.7610104309869	3612	50.08
+Pp3c1_29330V3.1	14.6343605953886	1.98458910551217	1.10904311961093	0.997207190889527	2.88244746881286	4231	46.58
+Pp3c1_29700V3.1	414.47057888421	60.4787026745219	1.79088532158821	0.99999999999787	2.77677059809261	3459	48.8
+Pp3c1_3040V3.1	110.214432908829	42.2792490949097	1.03766576707385	0.996488454385045	1.38229150257799	2886	47.19
+Pp3c1_30410V3.1	1223.84111999834	226.602520145824	3.08247995746255	1	2.4331804671962	1085	51.06
+Pp3c1_30550V3.1	81.075193970561	19.5406168546181	1.11847121893359	0.998513191298696	2.05278455954207	1236	50.24
+Pp3c1_30570V3.1	118.124801759915	31.0749007438767	1.49814366021127	0.997587142884682	1.92649021987215	1017	50.84
+Pp3c1_30790V3.1	174.60475724063	53.693495882138	1.33538658801142	0.998771586855805	1.70127362261736	1332	48.57
+Pp3c1_30900V3.1	11.4716636624556	0.646643911826196	1.79709985556392	0.999999999999794	4.14895934091177	2342	44.88
+Pp3c1_31540V3.1	1824.46611175899	591.802985370543	2.92952879773272	1	1.62428547468558	2623	48.19
+Pp3c1_31910V3.1	1041.94215802899	718.948204814738	1.08573316234629	0.99756708307835	0.535315447186302	1979	46.29
+Pp3c1_3210V3.1	32.9230329825764	10.6172184738466	1.07754008212296	0.997855559413717	1.63269139319855	1730	46.36
+Pp3c1_32200V3.1	79.8012087339793	4.40718832494098	2.64345520482286	1	4.17848014754737	845	53.61
+Pp3c1_32310V3.1	2620.67618676063	1989.57740917853	1.76533452910544	0.999999659126005	0.397477072348466	887	49.27
+Pp3c1_3260V3.1	12.9997450086569	0.913353624238672	1.923457445532	0.999998485759617	3.83116597632327	3893	50.37
+Pp3c1_3300V3.1	1021.1508089557	309.318821762878	3.3746241892895	1	1.7230294189259	2489	49.5
+Pp3c1_33460V3.1	34.9652120369755	135.446356881685	-1.56649303544366	0.999679129000189	-1.95372943054821	3404	46.62
+Pp3c1_34020V3.1	186.23000016806	54.453136802454	1.52706719073894	0.999900644482444	1.77399843460716	2353	48.11
+Pp3c1_34210V3.1	136.091730098172	1.17843363991808	2.89154417768935	1	6.85156507118752	1688	55.63
+Pp3c1_34240V3.1	293.960808457809	11.2939386675713	3.05232675776004	1	4.70200321748524	1087	56.12
+Pp3c1_34890V3.1	37.3417544387989	2.61063557941347	1.83785024338597	0.99998584855438	3.83831672179763	2043	48.51
+Pp3c1_35120V3.1	39.577524205002	14.0313344463302	0.923385579185919	0.995629557116761	1.49602914397159	1947	50.44
+Pp3c1_35321V3.1	81.1110554912408	29.5066335425081	1.14752653845018	0.996719985030293	1.45885923729748	980	39.59
+Pp3c1_35330V3.1	868.304017102124	536.70774291439	1.18484310588119	0.997030436534468	0.694063556736521	471	44.59
+Pp3c1_35610V3.1	109.336786186782	28.7636314152824	1.39026866334478	0.999615920493608	1.92646114214194	2597	44.71
+Pp3c1_36100V3.1	413.356374699138	652.697105070794	-1.30408728296208	0.995951087229652	-0.659027504564862	2972	44.18
+Pp3c1_3610V3.1	1881.00353805936	1278.33118781392	1.61356025108511	0.998455276653524	0.557240906864526	1798	43.83
+Pp3c1_37550V3.1	61.186946174814	14.0117480248858	1.41349348548884	0.999617778628155	2.12658694711013	4820	44.56
+Pp3c1_38210V3.1	121.336005035544	349.446953630837	-1.52628813015145	0.999778332045286	-1.52606575297574	1704	48.83
+Pp3c1_38340V3.1	30.1926623596181	5.86729018003112	1.26399218470932	0.999428277047396	2.36343172729286	1850	49.89
+Pp3c1_38350V3.1	19.1427288509423	3.66061126608377	1.24986559525982	0.998098138284452	2.38664002306247	1350	47.85
+Pp3c1_38430V3.1	5.48045153158313	43.1073753320029	-1.3931194131402	0.995257939173349	-2.9755680580801	1768	43.44
+Pp3c1_38580V3.1	6.78631125201359	0.798165666584587	1.21919496246565	0.995864312144661	3.08786747312465	1707	43.88
+Pp3c1_38770V3.1	12.53099332338	2.6528926074518	1.06040978677102	0.997664672508448	2.23986260096757	3393	46.71
+Pp3c1_39100V3.1	10.1030246724304	1.69338523630649	1.41670385391121	0.999383128941474	2.57680515453388	2324	48.71
+Pp3c1_39350V3.1	31.1696237405022	9.92752400974818	1.03776256209995	0.996489580016436	1.65063488975971	2175	46.44
+Pp3c1_39520V3.1	3.58097787652432	20.4039804397602	-1.27919972517112	0.996591049912695	-2.51042511206076	2050	47.22
+Pp3c1_39760V3.1	204.05154059046	45.9079819060747	1.5728692957065	0.999830855819831	2.15211668465258	2521	48.12
+Pp3c1_39780V3.1	104.381668321323	36.3388313662405	1.23736575372641	0.997213554321581	1.52228443642622	2273	48.61
+Pp3c1_39900V3.1	167.222049576327	74.2251978836364	1.10725480641733	0.997024276460219	1.17178415140169	1667	52.61
+Pp3c1_40040V3.1	394.488608660914	194.578638425667	1.2506557415101	0.998167539156405	1.01963030693577	2313	51.49
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+Pp3c8_6290V3.1	605.055791906799	378.702869134073	1.17150171440279	0.995577157174697	0.67600182731403	4232	46.17
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+Pp3c8_7680V3.1	20933.9186583694	1481.8811386195	9.03960478804285	0.999999999999994	3.82034075846093	902	49.89
+Pp3c8_7770V3.1	10.828377590391	2.10941206834656	1.21782917662279	0.995880699186219	2.35990424634121	3746	56.59
+Pp3c8_8150V3.1	932.463097176925	1713.9531595717	-2.14751012275201	1	-0.878209146710802	835	49.22
+Pp3c8_9250V3.1	58.4979706124589	0.465509266821891	4.34142993565037	1	6.97343287837599	414	45.41
+Pp3c8_9251V3.1	18.7396600567616	0.465509266821891	2.61563991001842	1	5.33114108449444	1630	42.76
+Pp3c9_11840V3.1	11.6766772822279	3.04409830973189	1.11428462955448	0.997920636691363	1.93954294219354	3173	49.1
+Pp3c9_12560V3.1	1.63205393049317	6.81222302272527	-1.31941806538993	0.999125150319192	-2.06143693631223	5813	48.58
+Pp3c9_12590V3.1	201.87101290878	447.768208505512	-1.40007258401682	0.996676193223529	-1.14931833476486	3077	48.59
+Pp3c9_12890V3.1	3483.12052770418	4392.30048218589	-1.80679386748352	0.999141831548022	-0.334596358202731	1086	45.76
+Pp3c9_13280V3.1	121.86498622402	43.9089596213377	1.118307905826	0.998492993000642	1.47269641916812	1497	48.23
+Pp3c9_13730V3.1	59.9203028729866	15.8332238390481	1.32351965189086	0.998242800284445	1.92008988022374	2433	47.06
+Pp3c9_15111V3.1	19.8659578670029	2.19565001340264	1.41947730306412	0.99911561461102	3.17757834460957	665	44.21
+Pp3c9_15440V3.1	38.3776699322525	0.614069742229155	2.90464242387363	1	5.96572079471136	942	52.44
+Pp3c9_16700V3.1	153.148877813876	2.00855158778737	4.26380524377357	1	6.25263546937282	1654	45.1
+Pp3c9_17890V3.1	247.216403277363	45.6283518410235	1.50722317784512	0.998239525182283	2.43777202426775	96	45.83
+Pp3c9_19390V3.1	45.4808711037849	11.7815976447194	1.10020525882014	0.996697813667712	1.948724697469	2164	48.61
+Pp3c9_19520V3.1	126.024882003334	6.43142531672048	2.68136465236967	1	4.29242629380515	1071	47.81
+Pp3c9_19800V3.1	31.9414200548652	7.25984225309846	1.31230230609327	0.99825853342387	2.13741834786315	1590	44.84
+Pp3c9_2020V3.1	339.803763503163	641.661127002908	-1.57637314482622	0.998097512401324	-0.917109753576757	1889	52.04
+Pp3c9_21290V3.1	193.888656837494	61.0201055963117	1.51536790156347	0.99921377207312	1.6678718215838	833	50.3
+Pp3c9_21480V3.1	5441.49489385824	4461.20719443366	1.48698753599834	0.998478077458132	0.286568891210171	1085	48.48
+Pp3c9_21830V3.1	363.344743043631	127.828596291042	1.45175446854509	0.99920390607106	1.50712841828384	955	46.6
+Pp3c9_21990V3.1	37.8827780734253	3.92399096805095	1.62411917479861	0.9996422410554	3.27114850645157	3411	50.45
+Pp3c9_2280V3.1	381.096767790698	106.135575213985	1.37366544689384	0.997674254462353	1.84424906297948	1861	49.76
+Pp3c9_23190V3.1	71.7310055069108	8.34167495198317	1.25946018733231	0.999040224559076	3.10418785295432	1049	46.14
+Pp3c9_2340V3.1	129.936572683515	272.930016933287	-1.19237613317212	0.997689106085395	-1.07072351435508	3292	45.47
+Pp3c9_23820V3.1	19.9549445503869	3.26122128740386	1.20555099241318	0.996881880685829	2.61326202761108	2147	49.05
+Pp3c9_24180V3.1	50.9062518910877	7.83034613428707	1.44873192627468	0.998875263055532	2.70069485999487	1323	49.96
+Pp3c9_24320V3.1	29.3762669243108	1.68862646928311	1.65480119929683	0.999998579257689	4.12072893400734	1503	53.76
+Pp3c9_24460V3.1	120.389967195058	23.8929944633547	1.02529604184671	0.995646114767348	2.33305558838152	1584	48.17
+Pp3c9_24660V3.1	36.9353847039502	0.477402950700554	2.86776395039285	1	6.27365231066796	1835	48.61
+Pp3c9_2480V3.1	35.5848917246431	0.567270739645979	2.96495898310682	1	5.97108358564028	1482	48.52
+Pp3c9_25200V3.1	233.391481453024	87.6959865426253	1.44593864957557	0.998549178705436	1.41216918161042	4232	51.58
+Pp3c9_2550V3.1	34.4040994040645	8.16698798865403	1.14824660542134	0.996562706674683	2.07470446779049	4402	51.59
+Pp3c9_25700V3.1	178.684557050783	28.8868530975346	1.99567512511269	0.999999999346174	2.62893000180587	2041	52.57
+Pp3c9_25950V3.1	71.782937506403	7.35139994142008	1.88347929823485	0.995836167605571	3.28755004597679	2542	49.92
+Pp3c9_3440V3.1	278.356005880494	8.81082658977908	3.02863150358468	1	4.98151002900095	1448	50.41
+Pp3c9_3690V3.1	4.31565256327695	0.401060312466507	1.55544861852105	0.99999868713961	3.42768760938198	3777	47.45
+Pp3c9_4460V3.1	314.605503013181	144.948554612202	1.24191334156304	0.997520074904934	1.11800295898589	1610	47.14
+Pp3c9_5280V3.1	27.2896448223441	2.04887013365623	1.88720743852741	0.996679830778909	3.73545316986079	2500	50.6
+Pp3c9_5310V3.1	1198.48123353972	83.1374436337548	5.05753415641292	1	3.84956512076475	2204	52.63
+Pp3c9_6540V3.1	134.00201256542	33.9527743547872	1.52056994355488	0.99964341861944	1.98065329842806	2598	49.88
+Pp3c9_660V3.1	22.6717117009432	5.76750160554923	1.10037259081059	0.996698254518583	1.97487491218415	2086	48.71
+Pp3c9_6780V3.1	10.2039084278465	0.465509266821891	2.26147531196957	1	4.45416815923848	4051	45.72
+Pp3c9_7970V3.1	186.241506925336	26.8460830635395	2.00557561974615	0.999999937614482	2.79439112212593	1542	45.85
+Pp3c9_9190V3.1	10.3261002310777	0.52887200906079	1.67592868394282	0.999631327751424	4.28723307497784	3261	45.54
+Pp3c9_9200V3.1	107.564116861046	38.8042023788107	1.08914549406576	0.997333651521442	1.47091207291227	1319	47.08
+Pp3s104_40V3.1	144.51596470628	8.47108300712202	2.01305269439184	0.999998785345984	4.09253863974111	791	50.95
+Pp3s123_10V3.1	682.127429026635	465.244079300772	0.915681299069244	0.995432018387711	0.552053485327853	2150	46.14
+Pp3s127_20V3.1	109.954961674127	28.9236978840285	1.20429064050615	0.997006328964503	1.92658878948603	2470	48.66
+Pp3s397_10V3.1	22.8669077189824	2.83702432061614	1.59316192058669	0.997589219503569	3.01081086058219	1059	57.51
+Pp3s504_10V3.1	9.08901286302706	0.650477176951038	1.89717757796395	0.998906244717128	3.80455327146365	1223	46.61
+Pp3s64_90V3.1	88.3066026659973	3.40020100305814	2.28648007144653	1	4.69882937292113	3005	52.31
+Pp3s67_80V3.1	452.013488766526	286.260932455196	0.918323250591518	0.995576085523981	0.659035033943844	288	53.12

runs/RNA-Seq_analysis/DEGs/DEGs_0.9/cop_D_WT_D/NOISeq/cop_D vs. WT_D_1497_NOISeq_rpkm_prob.tsv

+cop_D_mean	WT_D_mean	M	D	prob	ranking	Length	GC
+Pp3c1_10000V3.1	69.7036050423228	42.7336558933872	0.705860527785762	26.9699491489356	0.933792882334081	26.9791844980692	3195	46.98
+Pp3c1_10970V3.1	17.7013777048153	3.91798145883405	2.17567917473924	13.7833962459812	0.974911830714973	13.9540528859942	1994	49.15
+Pp3c1_11030V3.1	20.6156149279532	10.0097810097034	1.04232708318352	10.6058339182498	0.94260090484842	10.656930085622	1812	56.4
+Pp3c1_13170V3.1	50.9683961257998	32.1947925609969	0.662775600844495	18.773603564803	0.921787609988957	18.7852991007718	1650	54.3
+Pp3c1_1330V3.1	17.0325555379535	8.3534554344779	1.02784990922155	8.67910010347557	0.931780128958712	8.73975137186616	1483	45.85
+Pp3c1_13830V3.1	70.1376655088404	32.6623057796245	1.10256277127862	37.4753597292159	0.971376153325496	37.4915754736814	2077	43.72
+Pp3c1_13930V3.1	16.9913040451855	3.25107903028255	2.38580604848685	13.7402250149029	0.975846959495565	13.9458185116959	2363	47.44
+Pp3c1_14230V3.1	38.1669615331167	14.6649187480757	1.3799552605864	23.502042785041	0.977147233800007	23.5425209268489	1285	46.46
+Pp3c1_14380V3.1	33.8077160833772	6.76583792062702	2.32101203460366	27.0418781627501	0.988956574400627	27.1413019480237	869	48.56
+Pp3c1_15750V3.1	11.4118555860762	4.32177193225697	1.40083854955005	7.09008365381927	0.932011684656763	7.22714569246122	2361	49.26
+Pp3c1_1650V3.1	22.9099015847699	13.9577257621349	0.714907369719813	8.95217582263504	0.90328096612162	8.98067617201795	3950	50.46
+Pp3c1_17080V3.1	13.5291343783711	4.56296104128694	1.56802729452365	8.96617333708419	0.950081935093157	9.10225103515666	2157	51.51
+Pp3c1_17870V3.1	37.9666585985171	59.9432733893509	-0.65886483423314	21.9766147908338	0.924308004702362	-21.9864890451951	2486	46.7
+Pp3c1_18260V3.1	5.91151760541907	0.963432536701831	2.61727299472821	4.94808506871723	0.907947704036194	5.59764805755024	3467	51.51
+Pp3c1_18830V3.1	26.8318140465541	14.7597779097204	0.862273582351375	12.0720361368337	0.934977378789498	12.1027919183897	3940	56.32
+Pp3c1_19060V3.1	112.401673353862	183.251412432339	-0.705160804640996	70.8497390784763	0.93941256100602	-70.8532481912338	2458	51.55
+Pp3c1_19190V3.1	1445.07779312355	936.486090281538	0.625817688417798	508.59170284201	0.928867870756297	508.592087873489	1320	52.2
+Pp3c1_19210V3.1	42.1588249181312	15.8271034674504	1.41343740496977	26.3317214506808	0.979088739268284	26.3696294978525	1041	52.35
+Pp3c1_20700V3.1	25.2340717343463	9.79552173214134	1.36517877541532	15.438550002205	0.968259057390189	15.4987915419051	1592	45.98
+Pp3c1_20960V3.1	18.4786253625162	35.4468077798178	-0.939798271373637	16.9681824173016	0.951916568700794	-16.9941882812243	4104	47.86
+Pp3c1_20980V3.1	22.410804178306	35.6841019913328	-0.671087048044416	13.2732978130268	0.914538135442271	-13.2902517906681	3329	48.54
+Pp3c1_21400V3.1	20.727761467935	9.65436224125031	1.10231145414134	11.0733992266847	0.947187488867514	11.128129266659	3045	45.62
+Pp3c1_21540V3.1	376.122459266758	652.298530954804	-0.794329923336559	276.176071688046	0.951480175269851	-276.177214000482	1896	45.68
+Pp3c1_2210V3.1	24.8606396605194	12.3399258710338	1.01052968930454	12.5207137894855	0.94774856613587	12.5614268318205	2655	57.25
+Pp3c1_22120V3.1	73.0599829407831	39.0918044227653	0.90221523789623	33.9681785180179	0.958257632432047	33.9801580950917	1691	45.54
+Pp3c1_2220V3.1	14.1289932647561	6.98767026068144	1.01577523675123	7.14132300407465	0.918394428413665	7.21320272695304	3535	51.49
+Pp3c1_22560V3.1	15.334278770564	7.03272227535318	1.12460516175251	8.30155649521083	0.933721634426989	8.37738485525271	4804	48.38
+Pp3c1_22640V3.1	10.3521405830509	0.490151441751771	4.40055773769453	9.86198914129912	0.964669944070393	10.7992471138448	2813	48.24
+Pp3c1_23000V3.1	1.61108504900224	11.0678567774878	-2.78027131924831	9.45677172848553	0.961187702611236	-9.85699955023424	1653	47.91
+Pp3c1_23300V3.1	21.9419583740523	64.164150461916	-1.54807517003812	42.2221920878637	0.985465426953083	-42.2505626168048	2981	43.98
+Pp3c1_2420V3.1	23.3022548491879	7.87001946687492	1.56603045499626	15.432235382313	0.972311282106088	15.5114905886278	2531	46.42
+Pp3c1_24350V3.1	5.15651872373106	30.3447211695316	-2.55697625903102	25.1882024458005	0.98900110434256	-25.3176553029675	3896	47.51
+Pp3c1_24570V3.1	7.02342771099513	15.6754704692006	-1.1582615435523	8.65204275820551	0.937747141177728	-8.72922755420482	1654	45.53
+Pp3c1_25080V3.1	8.05527315558215	23.3196265988716	-1.53353927095059	15.2643534432894	0.97128709344163	-15.3411938498022	1762	49.6
+Pp3c1_26720V3.1	18.993410035751	4.15569334856919	2.19233784125201	14.8377166871818	0.977298635602579	14.9988060091215	2728	48.06
+Pp3c1_27020V3.1	70.0067609229572	112.841031651248	-0.688725598378185	42.8342707282906	0.934638951230808	-42.8398073265316	2354	48.05
+Pp3c1_27270V3.1	113.577597094348	257.297381786663	-1.17975848172782	143.719784692315	0.979266859036016	-143.724626776627	677	52.58
+Pp3c1_27630V3.1	11.1819228841386	5.13169158730103	1.12366192787638	6.0502312968376	0.909470628050301	6.15369115843426	2613	49.71
+Pp3c1_27990V3.1	69.854187079051	5.56408317150091	3.65013070330928	64.2901039075501	0.997301485518863	64.3936403272469	2361	48.96
+Pp3c1_28090V3.1	9.15303834174355	3.15912365496799	1.53472631563685	5.99391468677556	0.919828292543907	6.18727711810712	972	44.03
+Pp3c1_28340V3.1	36.0275926370574	54.8282178779511	-0.605816327280036	18.8006252408938	0.911296355669552	-18.8103833791587	6047	47.54
+Pp3c1_28680V3.1	181.284873467996	122.54010405958	0.565004569110024	58.7447694084163	0.912801467706886	58.7474864399416	966	46.17
+Pp3c1_29300V3.1	341.960944657598	99.3953195687656	1.78258174103128	242.565625088833	0.993071141035232	242.572174975613	3612	50.08
+Pp3c1_29700V3.1	49.4930044054076	7.10661321725133	2.79999053491007	42.3863911881562	0.994380321328061	42.4787724040019	3459	48.8
+Pp3c1_3040V3.1	13.1280013755663	4.96455155575852	1.40291198394742	8.16344981980776	0.942039827580065	8.28311988294402	2886	47.19
+Pp3c1_30410V3.1	145.638208169838	26.6186934065568	2.45187723349039	119.019514763281	0.996704784296961	119.044767194762	1085	51.06
+Pp3c1_30550V3.1	9.66246375984118	2.29858807429581	2.07164315153918	7.36387568554537	0.942725588685832	7.6497300906297	1236	50.24
+Pp3c1_30570V3.1	14.0678750971377	3.64637885210106	1.94786806338223	10.4214962450367	0.962487976915678	10.6019702875295	1017	50.84
+Pp3c1_30790V3.1	20.8165789064712	6.29839209877225	1.72467751028172	14.518186807699	0.972507213850593	14.6202688312396	1332	48.57
+Pp3c1_31540V3.1	217.538711089665	69.51965053592	1.64577941680553	148.019060553745	0.990728866089559	148.028209734165	2623	48.19
+Pp3c1_31680V3.1	25.1325731879175	60.8207207862756	-1.27500452534227	35.6881475983582	0.978634533860568	-35.710915915751	5533	47.77
+Pp3c1_31720V3.1	41.6831590698316	74.0159559505882	-0.828371692223238	32.3327968807565	0.950545046489259	-32.3434066510122	159	54.09
+Pp3c1_31830V3.1	5.21169464559365	11.4089231643195	-1.13033816506051	6.1972285187258	0.911964304798547	-6.29946868241289	1390	53.02
+Pp3c1_31910V3.1	124.193300900493	84.3755108489361	0.55769111843298	39.8177900515565	0.908339567525204	39.8216953930067	1979	46.29
+Pp3c1_32200V3.1	9.50141632203325	0.516572704316465	4.20109926518188	8.98484361771679	0.959424316910691	9.91850038416785	845	53.61
+Pp3c1_32560V3.1	46.6463960606726	30.6099517562735	0.607764850500632	16.0364443043991	0.907867550140715	16.0479570052265	1482	51.62
+Pp3c1_3300V3.1	121.6816152083	36.2949289333547	1.74527131223308	85.3866862749449	0.991334473299847	85.404520752529	2489	49.5
+Pp3c1_33460V3.1	4.16623354544783	15.8837270356174	-1.93073385371274	11.7174934901696	0.967306116632824	-11.8754952278227	3404	46.62
+Pp3c1_34020V3.1	22.1918024781013	6.39199839471681	1.79568790081872	15.7998040833845	0.976025079263297	15.9015189246336	2353	48.11
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+Pp3c8_7680V3.1	2492.8814838103	173.890481027399	3.84156343100393	2318.9910027829	0.999777350290335	2318.99418468387	902	49.89
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+Pp3c8_8150V3.1	111.058057861014	201.031403603032	-0.856106813911411	89.9733457420179	0.958622777955898	-89.9774186276174	835	49.22
+Pp3c8_870V3.1	25.0106259153603	11.8846019375864	1.07344758030851	13.1260239777739	0.952041252538207	13.1698441590159	2779	51.39
+Pp3c8_8720V3.1	14.1921012320134	27.0613232366774	-0.931144180012683	12.869222004664	0.943375725838054	-12.9028641971192	3706	49.62
+Pp3c8_9250V3.1	6.96423194704231	0.131794666409243	5.72360036113308	6.83243728063307	0.941256100602045	8.91301297473236	414	45.41
+Pp3c8_970V3.1	20.0422089207568	31.59276070623	-0.656552489582104	11.5505517854733	0.908295037583271	-11.5691965028033	2093	51.98
+Pp3c9_1000V3.1	23.656688883142	13.7611900625415	0.781642921324548	9.89549882060047	0.917459299633073	9.92632170368068	3046	51.31
+Pp3c9_10730V3.1	30.2743685950878	18.9397351315394	0.676680716116092	11.3346334635483	0.910254355028321	11.3548145094736	3241	50.57
+Pp3c9_11060V3.1	13.5901502864213	6.50234674202523	1.06352901433125	7.08780354439607	0.919783762601974	7.16715097150032	1890	47.25
+Pp3c9_11160V3.1	11.8421657309351	4.40485583295288	1.42676624261579	7.4373098979822	0.936179687221688	7.57292812785728	799	48.19
+Pp3c9_11700V3.1	13.7872172878172	7.22584115992986	0.932093856520586	6.56137612788736	0.906300096184675	6.627250987323	1677	48
+Pp3c9_12580V3.1	26.8213109099774	46.1112444569196	-0.781738850261381	19.2899335469422	0.938468526237042	-19.3057673215921	1668	47.84
+Pp3c9_12590V3.1	24.0208911057262	52.494491346406	-1.12787636569791	28.4736002406798	0.970325246695878	-28.4959298104544	3077	48.59
+Pp3c9_13280V3.1	14.5344586678791	5.1515496971164	1.49639894323062	9.38290897076266	0.951569235153717	9.501483597361	1497	48.23
+Pp3c9_13730V3.1	7.14573207070792	1.85727431092565	1.94389491060005	5.28845775978227	0.912338356310783	5.63440439624793	2433	47.06
+Pp3c9_14600V3.1	2.57068348638724	10.5494467237821	-2.03694344194415	7.9787632373949	0.948469951195184	-8.23467069068846	4619	47.3
+Pp3c9_14900V3.1	14.2445363688137	6.44549841576423	1.14404483723964	7.79903795304947	0.931423889423248	7.88250160689617	2776	47.95
+Pp3c9_16700V3.1	18.2482539467807	0.235794870471614	6.27408228455882	18.0124590763091	0.985563392825336	19.073877175056	1654	45.1
+Pp3c9_17440V3.1	34.845387208331	51.9326732258972	-0.57567480338065	17.0872860175662	0.903343308040326	-17.0969805791947	1892	46.09
+Pp3c9_17890V3.1	29.5272620038994	5.36727338082323	2.45978630639978	24.1599886230762	0.988333155213566	24.2848841656764	96	45.83
+Pp3c9_18040V3.1	12.0148009480563	20.3464724035381	-0.759965939810161	8.33167145548176	0.906629617754978	-8.36625946715503	1220	44.92
+Pp3c9_18350V3.1	33.0442324117318	20.3248502617419	0.701153759976396	12.71938214999	0.917628513412418	12.738692981331	1463	48.53
+Pp3c9_18450V3.1	24.4841400366183	39.6011658946323	-0.693695380444665	15.117025858014	0.921208720743828	-15.132933756305	2407	51.1
+Pp3c9_18580V3.1	10.785354272174	5.08066487545423	1.0859843551185	5.70468939671977	0.902443803213281	5.80713725794467	3058	43.33
+Pp3c9_19520V3.1	15.0204137730197	0.753110676078506	4.3179188487425	14.2673030969412	0.979400448861815	14.9063865790577	1071	47.81
+Pp3c9_20090V3.1	13.8104269830615	23.5200983879137	-0.768136170460935	9.70967140485216	0.915749349862848	-9.74000780115571	2461	54.82
+Pp3c9_20170V3.1	34.6504862090384	20.4428850297293	0.761276783199505	14.2076011793091	0.929090520465961	14.22798206391	4041	47.69
+Pp3c9_2020V3.1	40.4973868795369	75.2376980651606	-0.893626889406837	34.7403111856237	0.957732179117238	-34.7518026912482	1889	52.04
+Pp3c9_21290V3.1	23.0974163502295	7.16071717022855	1.68955549183615	15.9366991800009	0.9748940187382	16.0260094382175	833	50.3
+Pp3c9_21580V3.1	33.6420337063324	53.2291591811736	-0.661951856242473	19.5871254748412	0.92256243097859	-19.5983076980426	839	51.37
+Pp3c9_21830V3.1	43.3212433613421	15.0206490598587	1.52812749553191	28.3005943014834	0.981983185493926	28.341820891745	955	46.6
+Pp3c9_2280V3.1	45.5122037208591	12.4837646199231	1.8662003831618	33.028439100936	0.98816394143422	33.0811198920827	1861	49.76
+Pp3c9_23190V3.1	8.55400766825023	0.983277594797492	3.12092982573841	7.57073007345274	0.948594635032596	8.18878237726863	1049	46.14
+Pp3c9_2340V3.1	15.4813021621303	31.998319819389	-1.04746932904812	16.5170176572587	0.958088418652702	-16.5501983155941	3292	45.47
+Pp3c9_24180V3.1	6.07918493813333	0.918070563660757	2.72720095870472	5.16111437447258	0.913211143172669	5.83735613574737	1323	49.96
+Pp3c9_24230V3.1	2.1484851039813	7.06402878086345	-1.71717144639043	4.91554367688215	0.901695700188807	-5.20684620625909	2399	46.06
+Pp3c9_24460V3.1	14.3767701201834	2.8167623677941	2.3516298338336	11.5600077523893	0.96935449396174	11.7967767678581	1584	48.17
+Pp3c9_24710V3.1	3.42738664451671	9.23556850375703	-1.43009181843819	5.80818185924032	0.915286238466745	-5.98165020033537	2136	48.03
+Pp3c9_25200V3.1	27.81180382779	10.2864965101853	1.43494562183504	17.5253073176047	0.972863453386057	17.5839547745697	4232	51.58
+Pp3c9_25700V3.1	21.2913701036014	3.39162671234576	2.65021949195465	17.8997433912557	0.983648605322219	18.0948743247456	2041	52.57
+Pp3c9_25950V3.1	8.55038937436608	0.863424490023062	3.30784820123238	7.68696488434302	0.949886003348652	8.36846992320096	2542	49.92
+Pp3c9_3300V3.1	39.5464569061755	23.6747994314444	0.740196241317412	15.8716574747311	0.929063802500802	15.8889081270819	2624	49.96
+Pp3c9_3440V3.1	33.1982879998962	1.03607722196792	5.00190540468674	32.1622107779283	0.99365003028036	32.5488380714476	1448	50.41
+Pp3c9_4170V3.1	15.0561105664876	24.3818800747545	-0.695460247915993	9.32576950826692	0.904554522460903	-9.35166519277463	1149	47.26
+Pp3c9_4460V3.1	37.4748116596796	17.0075032007635	1.1397498668963	20.4673084589161	0.967377364539917	20.4990181548168	1610	47.14
+Pp3c9_4500V3.1	35.6731197140637	23.0700863092249	0.628813987631835	12.6030334048389	0.906513839905953	12.6187106328074	1154	47.14
+Pp3c9_4940V3.1	30.4879045449181	19.489525814688	0.645538006440833	10.9983787302301	0.904305154786078	11.0173070217425	1099	52.14
+Pp3c9_5310V3.1	142.839130529555	9.76725487030952	3.87029430365226	133.071875659245	0.998922375405222	133.128146045329	2204	52.63
+Pp3c9_5710V3.1	63.4115553670442	95.6478001283434	-0.592986023492657	32.2362447612992	0.913585194684906	-32.2416982917223	2054	46.49
+Pp3c9_6180V3.1	30.0849562152891	18.290696076145	0.717932277354772	11.7942601391441	0.916871504399558	11.8160906811293	1910	47.07
+Pp3c9_6250V3.1	77.5419154402375	49.4153609582947	0.650016794052801	28.1265544819428	0.924993765808129	28.1340645634122	1494	49.6
+Pp3c9_6540V3.1	15.9678287867852	3.98561297188679	2.002294629419	11.9822158148984	0.968606390937266	12.1483611906217	2598	49.88
+Pp3c9_6850V3.1	17.7663254034094	27.8790418893829	-0.650035660773763	10.1127164859736	0.900475579779844	-10.1335867828701	1224	43.06
+Pp3c9_7400V3.1	13.8961004770237	5.81977933644618	1.25564373287732	8.0763211405775	0.937969790887393	8.17334719375441	5914	48.29
+Pp3c9_7970V3.1	22.2118319591068	3.15260343182995	2.81671277761278	19.0592285272769	0.985465426953083	19.2662415360789	1542	45.85
+Pp3c9_8580V3.1	3.18255101507908	10.5447712597624	-1.72827225483568	7.36222024468328	0.940240817925973	-7.56235491881062	2730	53.48
+Pp3c9_9200V3.1	12.816187959561	4.55610914440002	1.49209299806071	8.260078815161	0.944569128281857	8.39376218078242	1319	47.08
+Pp3s104_40V3.1	17.2358162919958	0.994477651020713	4.1153268668306	16.2413386409751	0.983238929856435	16.7546111883174	791	50.95
+Pp3s123_10V3.1	81.2840084239379	54.5451307270767	0.575521136508707	26.7388776968612	0.909826867585765	26.74507066856	2150	46.14
+Pp3s127_20V3.1	13.117682307061	3.39577612127336	1.94969958813101	9.72190618578762	0.958881051619109	9.91548225600822	2470	48.66
+Pp3s64_90V3.1	10.5117057879566	0.399780359252346	4.71664539565228	10.1119254287043	0.965729756688397	11.157857306132	3005	52.31
+Pp3s67_80V3.1	53.8889324612018	33.5843853734814	0.682198380799574	20.3045470877204	0.926098108368067	20.3160042101842	288	53.12

runs/RNA-Seq_analysis/DEGs/DEGs_0.9/cop_D_WT_D/NOISeq/cop_D vs. WT_D_1505_NOISeq_tmm_prob.tsv

+cop_D_mean	WT_D_mean	M	D	prob	ranking	Length	GC
+Pp3c1_10000V3.1	584.771608007139	364.233869096047	0.683008186104075	220.537738911093	0.930435324712337	220.538796551082	3195	46.98
+Pp3c1_10970V3.1	148.320095356786	33.4056928567127	2.15054818985967	114.914402500074	0.974386377400164	114.934523792748	1994	49.15
+Pp3c1_11030V3.1	173.00594918621	85.3872634855762	1.01872885284871	87.618685700634	0.940980014962061	87.624607801588	1812	56.4
+Pp3c1_13170V3.1	427.975268228832	274.418832782452	0.641147934779732	153.556435446381	0.918875351786541	153.557773940862	1650	54.3
+Pp3c1_1330V3.1	143.000904910073	71.1860840814481	1.00635712994993	71.8148208286245	0.929874247443981	71.8218716361558	1483	45.85
+Pp3c1_13830V3.1	588.420958040131	278.21130829113	1.08066757114496	310.209649749001	0.971002101813259	310.211532087054	2077	43.72
+Pp3c1_13930V3.1	142.402861466538	27.6695458336747	2.36360726740533	114.733315632864	0.975187916354957	114.757659245145	2363	47.44
+Pp3c1_14230V3.1	320.346478020121	124.900405617248	1.35885496704926	195.446072402873	0.976577250543265	195.450796121507	1285	46.46
+Pp3c1_14380V3.1	283.324579539851	57.6568342765085	2.29689223563526	225.667745263343	0.989099070214812	225.679434078923	869	48.56
+Pp3c1_15750V3.1	95.6261850242326	36.7984927363767	1.37775904624366	58.8276922878559	0.93000783726978	58.8438238042377	2361	49.26
+Pp3c1_1650V3.1	192.224351606619	118.999518377855	0.691835378412314	73.2248332287638	0.900368707919205	73.2281014199542	3950	50.46
+Pp3c1_16980V3.1	117.197967389611	192.203354032049	-0.713685963236424	75.0053866424379	0.903904385308682	-75.0087819727512	4464	41.67
+Pp3c1_17080V3.1	113.466726883381	38.8653763696321	1.54571190956118	74.6013505137489	0.949511951836415	74.6173620800319	2157	51.51
+Pp3c1_17870V3.1	318.860123918941	511.161382660963	-0.680855159351248	192.301258742022	0.928707562965338	-192.302464044313	2486	46.7
+Pp3c1_18260V3.1	49.5796507096698	8.19765211252168	2.59646543554363	41.3819985971481	0.906558369847886	41.4633746896263	3467	51.51
+Pp3c1_18830V3.1	224.950647439502	125.926097894319	0.837031209926425	99.0245495451835	0.931477325353568	99.0280870958987	3940	56.32
+Pp3c1_19060V3.1	943.475119765747	1563.18476516792	-0.72843193359522	619.709645402174	0.943536033629012	-619.710073516293	2458	51.55
+Pp3c1_19190V3.1	12131.5886768868	7984.49299467406	0.603495782812828	4147.09568221278	0.924058637027537	4147.09572612389	1320	52.2
+Pp3c1_19210V3.1	353.914341955897	134.938794831813	1.3910950444618	218.975547124083	0.978572191941862	218.979965713109	1041	52.35
+Pp3c1_1940V3.1	5841.6823468727	8354.70211800836	-0.516204479880022	2513.01977113567	0.902390367282961	-2513.01982415297	2307	47.77
+Pp3c1_20700V3.1	211.717110249419	83.45435206914	1.3430786758068	128.262758180279	0.967537672330875	128.269789881882	1592	45.98
+Pp3c1_20960V3.1	155.169446808994	302.232790006326	-0.961815674863955	147.063343197331	0.954543835274839	-147.066488370969	4104	47.86
+Pp3c1_20980V3.1	188.19773823672	304.360008318394	-0.693529517125734	116.162270081673	0.919516582950376	-116.164340370523	3329	48.54
+Pp3c1_21400V3.1	173.832427815662	82.2486160217967	1.07963392856809	91.583811793865	0.945718000783727	91.5901751942521	3045	45.62
+Pp3c1_21540V3.1	3158.95366354751	5564.764540293	-0.816873869298389	2405.8108767455	0.95634284492893	-2405.81101542699	1896	45.68
+Pp3c1_2210V3.1	208.708552458715	105.231022220827	0.987929645049657	103.477530237888	0.945905026539845	103.482246154191	2655	57.25
+Pp3c1_22120V3.1	613.533671617531	333.133418632967	0.881042436498397	280.400252984564	0.956779238359873	280.401637137843	1691	45.54
+Pp3c1_2220V3.1	118.579974119089	59.5750956846364	0.993079118293492	59.0048784344529	0.915170460617719	59.0132348308391	3535	51.49
+Pp3c1_22560V3.1	128.663964609523	59.9510839562253	1.1017503053255	68.7128806532975	0.931512949307114	68.7217128818075	4804	48.38
+Pp3c1_22640V3.1	86.649062868604	4.18540480525696	4.37174507670536	82.463658063347	0.963681379359481	82.579459045239	2813	48.24
+Pp3c1_23000V3.1	13.5227687556107	94.4689037619581	-2.80444894660397	80.9461350063474	0.961891275693777	-80.994701717828	1653	47.91
+Pp3c1_23300V3.1	184.355344295838	547.372714094101	-1.57003428032059	363.017369798263	0.986578675501407	-363.020764947255	2981	43.98
+Pp3c1_23970V3.1	191.459421371621	294.087513486966	-0.619206876519271	102.628092115345	0.903797513448042	-102.629960091543	1803	47.86
+Pp3c1_2420V3.1	195.441593129609	67.1253980549688	1.54180688535497	128.31619507464	0.971670050942254	128.325457672688	2531	46.42
+Pp3c1_24350V3.1	43.4047760716015	258.80411246338	-2.5759348379394	215.399336391779	0.989268283994158	-215.414738489055	3896	47.51
+Pp3c1_24570V3.1	59.0023743118978	133.673790697286	-1.1798717090275	74.6714163853881	0.939946920309216	-74.6807372904805	1654	45.53
+Pp3c1_25080V3.1	67.5733258247779	198.824521444516	-1.55696992991135	131.251195619738	0.972587367746072	-131.26043008833	1762	49.6
+Pp3c1_26720V3.1	159.389328444229	35.4161368147443	2.17007628325141	123.973191629485	0.977031455950981	123.992183116018	2728	48.06
+Pp3c1_27020V3.1	587.995067172737	962.547678875982	-0.711053952971427	374.552611703245	0.93865555199316	-374.553286638158	2354	48.05
+Pp3c1_27270V3.1	953.661219869682	2194.93553967137	-1.20262981459876	1241.27431980169	0.980958996829468	-1241.27490239576	677	52.58
+Pp3c1_27630V3.1	93.7565469531744	43.6556930001661	1.10274963298716	50.1008539530083	0.906674147696911	50.1129885715641	2613	49.71
+Pp3c1_27990V3.1	586.062949338558	47.4023370684594	3.62802553871503	538.660612270099	0.997248049588543	538.672830000277	2361	48.96
+Pp3c1_28090V3.1	76.8700527857707	26.9005849483062	1.5147841148829	49.9694678374645	0.918305368529799	49.9924222945248	972	44.03
+Pp3c1_28340V3.1	302.415070332271	467.747141894005	-0.629198802535091	165.332071561734	0.918296462541413	-165.333268817947	6047	47.54
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+Pp3c8_6920V3.1	135.100062920111	73.9630952117525	0.869150841468724	61.1369677083587	0.908758148979374	61.1431455173687	2833	46.77
+Pp3c8_7340V3.1	64.8222234002884	145.075995885116	-1.16224842140115	80.2537724848273	0.943482597698693	-80.2621879806393	1489	49.03
+Pp3c8_7680V3.1	20933.9186583694	1481.8811386195	3.82034075846093	19452.0375197499	0.999750632325175	19452.0378949035	902	49.89
+Pp3c8_8000V3.1	148.110341746144	78.4337827668809	0.917125293101584	69.6765589792635	0.922250721385059	69.6825945986086	1195	48.37
+Pp3c8_8150V3.1	932.463097176925	1713.9531595717	-0.878209146710802	781.490062394778	0.961169890634463	-781.49055584383	835	49.22
+Pp3c8_870V3.1	209.685074962544	101.290683136948	1.04972269736564	108.394391825596	0.95080332015247	108.399474615803	2779	51.39
+Pp3c8_8720V3.1	119.299020220145	230.8308279138	-0.952253717122335	111.531807693655	0.945994086423711	-111.535872769958	3706	49.62
+Pp3c8_9250V3.1	58.4979706124589	0.465509266821891	6.97343287837599	58.0324613456371	0.941193758683339	58.4499387163244	414	45.41
+Pp3c8_970V3.1	168.417171234783	269.447890040961	-0.677967051373587	101.030718806177	0.913122083288803	-101.032993530904	2093	51.98
+Pp3c9_1000V3.1	198.496410688719	117.321824511573	0.758641507848549	81.1745861771462	0.91472516119839	81.1781311559238	3046	51.31
+Pp3c9_10730V3.1	254.096911339798	161.4534294842	0.654260752875803	92.6434818555981	0.905160129671191	92.645792065594	3241	50.57
+Pp3c9_11060V3.1	114.07206022715	55.4017939751798	1.0419408759893	58.6702662519698	0.91746820562146	58.6795175752671	1890	47.25
+Pp3c9_11160V3.1	99.2728638683064	37.399644705188	1.40837484784348	61.8732191631184	0.934443019486303	61.8892459908773	799	48.19
+Pp3c9_11700V3.1	115.666674534605	61.6615831671672	0.907529423848871	54.0050913674381	0.902532863097147	54.0127161255615	1677	48
+Pp3c9_12580V3.1	225.226914511403	393.274322879226	-0.80415675580973	168.047408367824	0.94226247728973	-168.049332421257	1668	47.84
+Pp3c9_12590V3.1	201.87101290878	447.768208505512	-1.14931833476486	245.897195596733	0.972658615653165	-245.899881526959	3077	48.59
+Pp3c9_13280V3.1	121.86498622402	43.9089596213377	1.47269641916812	77.956026602682	0.950607388407966	77.9699359908747	1497	48.23
+Pp3c9_13730V3.1	59.9203028729866	15.8332238390481	1.92008988022374	44.0870790339386	0.910949022122475	44.1288713077151	2433	47.06
+Pp3c9_14600V3.1	21.5617696767677	90.0141014171815	-2.06167543689715	68.4523317404137	0.949360550033843	-68.4833718964447	4619	47.3
+Pp3c9_14900V3.1	119.520343671552	54.9175652467084	1.12191663102788	64.602778424844	0.928663033023405	64.6125195077275	2776	47.95
+Pp3c9_16700V3.1	153.148877813876	2.00855158778737	6.25263546937282	151.140326226088	0.985118093406006	151.269605876532	1654	45.1
+Pp3c9_17440V3.1	292.72000279591	442.81531328237	-0.597183779181693	150.09531048646	0.910690748459264	-150.096498488449	1892	46.09
+Pp3c9_17890V3.1	247.216403277363	45.6283518410235	2.43777202426775	201.58805143634	0.988110505503901	201.60279069086	96	45.83
+Pp3c9_18040V3.1	100.923305450997	173.570778427538	-0.782264719265159	72.6474729765408	0.910432474796053	-72.6516845501069	1220	44.92
+Pp3c9_18350V3.1	277.385961473525	173.249273375653	0.679045473022141	104.136688097871	0.914288767767447	104.138902004715	1463	48.53
+Pp3c9_18450V3.1	205.540664657587	337.663074683013	-0.716160572933249	132.122410025426	0.927416194649282	-132.124350961104	2407	51.1
+Pp3c9_19520V3.1	126.024882003334	6.43142531672048	4.29242629380515	119.593456686613	0.978768123686367	119.670463380655	1071	47.81
+Pp3c9_20090V3.1	116.000964212199	200.540697973442	-0.789758251445957	84.5397337612432	0.920335933881942	-84.5434225857791	2461	54.82
+Pp3c9_20170V3.1	290.921369598249	174.232002084025	0.739619637879845	116.689367514224	0.926881835346087	116.691711479772	4041	47.69
+Pp3c9_2020V3.1	339.803763503163	641.661127002908	-0.917109753576757	301.857363499744	0.961178796622849	-301.858756688152	1889	52.04
+Pp3c9_21290V3.1	193.888656837494	61.0201055963117	1.6678718215838	132.868551241182	0.974457625307257	132.879019056222	833	50.3
+Pp3c9_21580V3.1	282.521633547852	454.192109411043	-0.684941299268203	171.670475863191	0.927113391044138	-171.671842267967	839	51.37
+Pp3c9_21830V3.1	363.344743043631	127.828596291042	1.50712841828384	235.516146752589	0.982054433401019	235.520968954478	955	46.6
+Pp3c9_2280V3.1	381.096767790698	106.135575213985	1.84424906297948	274.961192576712	0.988101599515514	274.967377479246	1861	49.76
+Pp3c9_23190V3.1	71.7310055069108	8.34167495198317	3.10418785295432	63.3893305549276	0.947107334972035	63.4652913837817	1049	46.14
+Pp3c9_2340V3.1	129.936572683515	272.930016933287	-1.07072351435508	142.993444249772	0.959985394179046	-142.997452939753	3292	45.47
+Pp3c9_24180V3.1	50.9062518910877	7.83034613428707	2.70069485999487	43.0759057568006	0.911394321541805	43.1604843519575	1323	49.96
+Pp3c9_24230V3.1	18.0495972109014	60.2495757406709	-1.73898443960954	42.1999785297694	0.904340778739624	-42.2357935262758	2399	46.06
+Pp3c9_24460V3.1	120.389967195058	23.8929944633547	2.33305558838152	96.4969727317035	0.9685173310534	96.5251723373837	1584	48.17
+Pp3c9_24710V3.1	28.7544611862982	78.7637086132465	-1.45374523844661	50.0092474269483	0.917334615795661	-50.030372809205	2136	48.03
+Pp3c9_25200V3.1	233.391481453024	87.6959865426253	1.41216918161042	145.695494910398	0.972427059955114	145.702338550153	4232	51.58
+Pp3c9_25700V3.1	178.684557050783	28.8868530975346	2.62893000180587	149.797703953249	0.983568451426739	149.820770865122	2041	52.57
+Pp3c9_25950V3.1	71.782937506403	7.35139994142008	3.28755004597679	64.4315375649829	0.948371985322931	64.5153549032523	2542	49.92
+Pp3c9_3300V3.1	331.961293261828	201.678371962708	0.718958655631853	130.28292129912	0.927015425171886	130.284905049592	2624	49.96
+Pp3c9_3440V3.1	278.356005880494	8.81082658977908	4.98151002900095	269.545179290715	0.993382850628763	269.591207425303	1448	50.41
+Pp3c9_4170V3.1	126.526567132076	207.749619812801	-0.715405493446856	81.2230526807248	0.909933739446404	-81.2262032339063	1149	47.26
+Pp3c9_4460V3.1	314.605503013181	144.948554612202	1.11800295898589	169.656948400979	0.966175056107727	169.660632061031	1610	47.14
+Pp3c9_4500V3.1	299.300722454199	196.604568252251	0.606298917075668	102.696154201949	0.901597734316554	102.697943924147	1154	47.14
+Pp3c9_5310V3.1	1198.48123353972	83.1374436337548	3.84956512076475	1115.34378990597	0.998815503544583	1115.35043319731	2204	52.63
+Pp3c9_5710V3.1	532.907509551825	815.938435941726	-0.614575139094088	283.030926389901	0.920371557835489	-283.031593635282	2054	46.49
+Pp3c9_6180V3.1	252.223825565342	155.870210106636	0.69435933525179	96.353615458706	0.913006305439778	96.3561173296778	1910	47.07
+Pp3c9_6250V3.1	650.58981058696	420.853790197933	0.628429117074678	229.736020389027	0.922696020804389	229.736879902515	1494	49.6
+Pp3c9_6540V3.1	134.00201256542	33.9527743547872	1.98065329842806	100.049238210633	0.968161091517937	100.068841574271	2598	49.88
+Pp3c9_6850V3.1	149.224557723991	237.723719961477	-0.671800884004991	88.4991622374863	0.906718677638844	-88.5017120352181	1224	43.06
+Pp3c9_7400V3.1	116.549884625759	49.5871862183478	1.23290830801073	66.9626984074108	0.935511738092694	66.9740475176603	5914	48.29
+Pp3c9_7970V3.1	186.241506925336	26.8460830635395	2.79439112212593	159.395423861797	0.984975597591821	159.419916477915	1542	45.85
+Pp3c9_8580V3.1	26.7404537678823	89.8543920659056	-1.74856507689964	63.1139382980233	0.941630152114282	-63.1381555583852	2730	53.48
+Pp3c9_9200V3.1	107.564116861046	38.8042023788107	1.47091207291227	68.7599144822356	0.942903708453564	68.7756455580796	1319	47.08
+Pp3s104_40V3.1	144.51596470628	8.47108300712202	4.09253863974111	136.044881699158	0.982392860959709	136.106424202003	791	50.95
+Pp3s123_10V3.1	682.127429026635	465.244079300772	0.552053485327853	216.883349725864	0.903218624202914	216.884052321423	2150	46.14
+Pp3s127_20V3.1	109.954961674127	28.9236978840285	1.92658878948603	81.0312637900987	0.958613871967511	81.0541637165194	2470	48.66
+Pp3s64_90V3.1	88.3066026659973	3.40020100305814	4.69882937292113	84.9064016629391	0.965150867443269	85.0363218914375	3005	52.31
+Pp3s67_80V3.1	452.013488766526	286.260932455196	0.659035033943844	165.75255631133	0.923185850165651	165.753866473505	288	53.12

runs/RNA-Seq_analysis/DEGs/DEGs_0.9/cop_D_WT_D/NOISeq/cop_D vs. WT_D_895_NOISeq_nnorm_prob.tsv

+cop_D_mean	WT_D_mean	M	D	prob	ranking	Length	GC
+Pp3c1_10970V3.1	271	72.3333333333333	1.90556030963055	198.666666666667	0.913068647358484	198.675805282219	1994	49.15
+Pp3c1_12020V3.1	1006.33333333333	1723.66666666667	-0.776372547969764	717.333333333333	0.929785187560115	-717.333753468666	3719	47.94
+Pp3c1_13830V3.1	1118.66666666667	642.666666666667	0.799637664209862	476	0.922624772897296	476.000671659604	2077	43.72
+Pp3c1_13930V3.1	309.333333333333	74.6666666666667	2.05062607306997	234.666666666667	0.933124933205087	234.675626156054	2363	47.44
+Pp3c1_140V3.1	1175.66666666667	1955.66666666667	-0.734181416245113	780	0.919320651205871	-780.000345527072	2150	46
+Pp3c1_16980V3.1	475	934.333333333333	-0.976009825093027	459.333333333333	0.941380784439457	-459.334370264505	4464	41.67
+Pp3c1_17870V3.1	721.333333333333	1381.66666666667	-0.937671602556298	660.333333333333	0.948852908695807	-660.333999078607	2486	46.7
+Pp3c1_19060V3.1	2115.66666666667	4151	-0.972346590041984	2035.33333333333	0.95945103487585	-2035.33356559451	2458	51.55
+Pp3c1_1940V3.1	12221	20917.3333333333	-0.775336599444604	8696.33333333333	0.938041038794485	-8696.33336789657	2307	47.77
+Pp3c1_20010V3.1	283	533	-0.913333479927294	250	0.900555733675323	-250.001668350524	2754	48.33
+Pp3c1_20960V3.1	579.333333333333	1352.33333333333	-1.22298522039187	773	0.972498307862207	-773.000967459193	4104	47.86
+Pp3c1_20980V3.1	570.666666666667	1095.66666666667	-0.941088754679164	525	0.943455879733533	-525.00084347365	3329	48.54
+Pp3c1_21160V3.1	1104.33333333333	1757.66666666667	-0.670485793298818	653.333333333333	0.901838196002992	-653.333677377528	1969	48.6
+Pp3c1_21540V3.1	5449	11380.3333333333	-1.06247941920125	5931.33333333333	0.971251469488084	-5931.33342849427	1896	45.68
+Pp3c1_21890V3.1	2227.33333333333	3587.66666666667	-0.687728372439611	1360.33333333333	0.914840939047415	-1360.33350717686	3390	52.51
+Pp3c1_21920V3.1	567.333333333333	962.666666666667	-0.762839705201208	395.333333333333	0.908624559153575	-395.334069324742	3610	64.27
+Pp3c1_22640V3.1	224	12.3333333333333	4.18286405714981	211.666666666667	0.927006519183499	211.707992597111	2813	48.24
+Pp3c1_23300V3.1	499.333333333333	1765.33333333333	-1.82186549834847	1266	0.989802643297353	-1266.00131089738	2981	43.98
+Pp3c1_2420V3.1	452	180.333333333333	1.32565667930953	271.666666666667	0.934095685939226	271.669901062685	2531	46.42
+Pp3c1_24350V3.1	152.333333333333	1091	-2.84034753198669	938.666666666667	0.993454098535856	-938.670964015194	3896	47.51
+Pp3c1_25080V3.1	108.666666666667	380.333333333333	-1.8073549220576	271.666666666667	0.943135264151616	-271.672678621889	1762	49.6
+Pp3c1_26720V3.1	396.333333333333	105.666666666667	1.90719396960625	290.666666666667	0.94931602009191	290.672923575535	2728	48.06
+Pp3c1_27020V3.1	1256.66666666667	2452.33333333333	-0.964553067863756	1195.66666666667	0.956779238359873	-1195.66705572262	2354	48.05
+Pp3c1_27270V3.1	590	1603	-1.44198756590534	1013	0.9818674076449	-1013.00102632137	677	52.58
+Pp3c1_27990V3.1	1264	123.333333333333	3.35736178838195	1140.66666666667	0.995823091446689	1140.67160757276	2361	48.96
+Pp3c1_28340V3.1	1666	3057.33333333333	-0.87588545349409	1391.33333333333	0.950420362651847	-1391.3336090312	6047	47.54
+Pp3c1_29300V3.1	9471.33333333333	3389.66666666667	1.48242412788985	6081.66666666667	0.987113034804603	6081.66684733929	3612	50.08
+Pp3c1_29700V3.1	1309.33333333333	232.333333333333	2.49456436844627	1077	0.993293790744897	1077.00288897077	3459	48.8
+Pp3c1_29970V3.1	397	706.333333333333	-0.831210174508056	309.333333333333	0.907270848918813	-309.334450104519	2763	48.64
+Pp3c1_30410V3.1	1199.66666666667	272.666666666667	2.13742335398298	927	0.990675430159239	927.002464170724	1085	51.06
+Pp3c1_30760V3.1	464.333333333333	808.666666666667	-0.800384292519257	344.333333333333	0.908535499269709	-344.334263557172	1200	46.08
+Pp3c1_31540V3.1	4384	1732.33333333333	1.33953124001378	2651.66666666667	0.983274553809982	2651.66700500931	2623	48.19
+Pp3c1_31680V3.1	1065.66666666667	3097.33333333333	-1.53927041002829	2031.66666666667	0.987121940792989	-2031.66724977242	5533	47.77
+Pp3c1_32910V3.1	7152.33333333333	11678	-0.70730733647428	4525.66666666667	0.922642584874069	-4525.66672193849	2227	45.26
+Pp3c1_3300V3.1	2320.33333333333	841	1.46415436864038	1479.33333333333	0.984699511951836	1479.33405789873	2489	49.5
+Pp3c1_33460V3.1	108.333333333333	503.666666666667	-2.21699203724901	395.333333333333	0.970173844893306	-395.339549625556	3404	46.62
+Pp3c1_34020V3.1	399.666666666667	140.666666666667	1.50651675470704	259	0.934567703323715	259.004381416092	2353	48.11
+Pp3c1_34210V3.1	209.333333333333	2.33333333333333	6.48726582683402	207	0.924797834063624	207.101628718627	1688	55.63
+Pp3c1_34240V3.1	291.666666666667	14	4.38082178394093	277.666666666667	0.952157030387232	277.701223218913	1087	56.12
+Pp3c1_36100V3.1	1121.33333333333	2106.33333333333	-0.909518560215936	985	0.951595953118877	-985.000419910576	2972	44.18
+Pp3c1_36129V3.1	391.333333333333	834.666666666667	-1.09280215382257	443.333333333333	0.951880944747248	-443.334680192055	3433	49.11
+Pp3c1_37550V3.1	270	74.6666666666667	1.85442317571438	195.333333333333	0.91072637241281	195.34213574246	4820	44.56
+Pp3c1_38210V3.1	187.666666666667	659.666666666667	-1.81356478496728	472	0.973860924085355	-472.003484115562	1704	48.83
+Pp3c1_38440V3.1	3098.66666666667	5263.33333333333	-0.76432919734307	2164.66666666667	0.93280431762317	-2164.6668016064	3051	47.56
+Pp3c1_39210V3.1	282.666666666667	533.333333333333	-0.915935735211525	250.666666666667	0.901401802572049	-250.668340075185	4152	47.5
+Pp3c1_39760V3.1	472	128.333333333333	1.87889091450073	343.666666666667	0.959905240283567	343.671802754963	2521	48.12
+Pp3c1_40350V3.1	1454.66666666667	2649	-0.864759242767171	1194.33333333333	0.946929215204303	-1194.33364639855	2409	44.13
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