ARC mininmal Example RNASeq

Notes

• CWL not yet implemented

isa.assay

• split GEO SWATE templates into four sheets
  • 1SPL01_plants
  • 2EXT01_RNA
  • 3ASY01_RNASeq
  • 4COM01_RNASeq

adding big data via git lfs

git lfs track "*.fastq.gz"

git lfs track "01_kallisto_index"

add big data files to respective folder

git add assays/Talinum_RNASeq_minimal/dataset/
git add runs/run1/01_kallisto_index