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workflows/braker2/index_STAR.sh

workflows/braker2/readme.txt

workflows/braker2/run_STAR.sh

...s/functional_annotation/analyse_functional_annotation.Rmd

workflows/functional_annotation/readme.txt

workflows/functional_annotation/run_interproscan.sh

...e_expression_quantification/isoseq_expression_support.Rmd

...uantification/plot_expression_quantification_kallisto.Rmd

workflows/gene_expression_quantification/readme.txt

workflows/gene_expression_quantification/run_kallisto.sh

workflows/genome_polishing/helper_script.R

workflows/genome_polishing/process_nextpolish_output.sh

workflows/genome_polishing/readme.txt

workflows/genome_polishing/remove_ambiguous_bases.sh

workflows/genome_polishing/run_nextpolish.sh

workflows/genome_polishing/unpackSRA.sh

workflows/isoseq_assembly/combined_isoseq3_pipeline.sh

workflows/isoseq_assembly/combined_mapping_and_collapse.sh

...oseq_assembly/combined_mapping_and_collapse_old_genome.sh

...eq_assembly/comparison_isoseq_polishing_effectiveness.Rmd