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- workflows/BSA/RNAseq/QC.sh 9 additions, 9 deletionsworkflows/BSA/RNAseq/QC.sh
- workflows/BSA/RNAseq/adapter_trimming.sh 2 additions, 2 deletionsworkflows/BSA/RNAseq/adapter_trimming.sh
- workflows/BSA/RNAseq/index_STAR.sh 3 additions, 3 deletionsworkflows/BSA/RNAseq/index_STAR.sh
- workflows/BSA/RNAseq/run_STAR.sh 2 additions, 2 deletionsworkflows/BSA/RNAseq/run_STAR.sh
- workflows/BSA/RNAseq/run_kallisto.sh 2 additions, 2 deletionsworkflows/BSA/RNAseq/run_kallisto.sh
- workflows/BSA/WGS/combined_filter.sh 3 additions, 3 deletionsworkflows/BSA/WGS/combined_filter.sh
- workflows/BSA/WGS/map_reads.sh 3 additions, 3 deletionsworkflows/BSA/WGS/map_reads.sh
- workflows/BSA/betalain_quantification.Rmd 39 additions, 41 deletionsworkflows/BSA/betalain_quantification.Rmd
- workflows/BSA/bsa_and_plotting.R 48 additions, 54 deletionsworkflows/BSA/bsa_and_plotting.R
- workflows/BSA/read_count_analysis.Rmd 8 additions, 8 deletionsworkflows/BSA/read_count_analysis.Rmd
- workflows/BSA/read_count_analysis_from_bam.Rmd 30 additions, 39 deletionsworkflows/BSA/read_count_analysis_from_bam.Rmd
- workflows/BSA/readme.txt 11 additions, 11 deletionsworkflows/BSA/readme.txt
- workflows/BSA/snpEff_analysis.Rmd 70 additions, 76 deletionsworkflows/BSA/snpEff_analysis.Rmd
- workflows/annotation_analysis/R2R3_analysis_reannotation.Rmd 20 additions, 20 deletionsworkflows/annotation_analysis/R2R3_analysis_reannotation.Rmd
- workflows/annotation_analysis/betalain_and_flavonoid_identification.sh 27 additions, 27 deletions...otation_analysis/betalain_and_flavonoid_identification.sh
- workflows/annotation_analysis/betalain_phylogenetic_analysis.Rmd 12 additions, 19 deletions...ws/annotation_analysis/betalain_phylogenetic_analysis.Rmd
- workflows/annotation_analysis/circos_plotting.Rmd 11 additions, 14 deletionsworkflows/annotation_analysis/circos_plotting.Rmd
- workflows/annotation_analysis/readme.txt 4 additions, 4 deletionsworkflows/annotation_analysis/readme.txt
- workflows/braker2/braker2_prot.sh 4 additions, 4 deletionsworkflows/braker2/braker2_prot.sh
- workflows/braker2/braker2_prot_rna.sh 14 additions, 14 deletionsworkflows/braker2/braker2_prot_rna.sh
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