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--- a/assays/visual_observation_hairy_roots_via_binocular/dataset/raw_data/timecourse/hairy-root_exp2_b2_4_M2G_3_GFP2.tif
+++ b/assays/visual_observation_hairy_roots_via_binocular/dataset/raw_data/timecourse/hairy-root_exp2_b2_4_M2G_3_GFP2.tif
--- a/assays/visual_observation_hairy_roots_via_binocular/dataset/raw_data/timecourse/hairy-root_exp2_b2_4_M2G_3_GFP2_d2.tif
+++ b/assays/visual_observation_hairy_roots_via_binocular/dataset/raw_data/timecourse/hairy-root_exp2_b2_4_M2G_3_GFP2_d2.tif
--- a/assays/visual_observation_hairy_roots_via_binocular/dataset/raw_data/timecourse/hairy-root_exp2_b2_4_M2G_3_GFP2_d4_2.0.tif
+++ b/assays/visual_observation_hairy_roots_via_binocular/dataset/raw_data/timecourse/hairy-root_exp2_b2_4_M2G_3_GFP2_d4_2.0.tif
--- a/assays/visual_observation_hairy_roots_via_binocular/isa.assay.xlsx
+++ b/assays/visual_observation_hairy_roots_via_binocular/isa.assay.xlsx
--- a/assays/visual_observation_hairy_roots_via_binocular/protocols/.gitkeep
+++ b/assays/visual_observation_hairy_roots_via_binocular/protocols/.gitkeep
--- a/isa.investigation.xlsx
+++ b/isa.investigation.xlsx
--- a/studies/BSA_parent_betalain_quant/isa.study.xlsx
+++ b/studies/BSA_parent_betalain_quant/isa.study.xlsx
--- a/studies/Bulk_segregant_analysis/isa.study.xlsx
+++ b/studies/Bulk_segregant_analysis/isa.study.xlsx
--- a/studies/additional_data/isa.study.xlsx
+++ b/studies/additional_data/isa.study.xlsx
--- a/studies/hairy_root_transformation/README.md
+++ b/studies/hairy_root_transformation/README.md
--- a/studies/hairy_root_transformation/isa.study.xlsx
+++ b/studies/hairy_root_transformation/isa.study.xlsx
--- a/studies/hairy_root_transformation/protocols/.gitkeep
+++ b/studies/hairy_root_transformation/protocols/.gitkeep
--- a/studies/hairy_root_transformation/protocols/Detailed protocol for amaranth hairy root transformation modified from Lota et al_v1.pdf
+++ b/studies/hairy_root_transformation/protocols/Detailed protocol for amaranth hairy root transformation modified from Lota et al_v1.pdf
--- a/studies/hairy_root_transformation/resources/.gitkeep
+++ b/studies/hairy_root_transformation/resources/.gitkeep
--- a/studies/isoform_sequencing/isa.study.xlsx
+++ b/studies/isoform_sequencing/isa.study.xlsx
--- a/studies/leek_epidermis_bombardment/README.md
+++ b/studies/leek_epidermis_bombardment/README.md
--- a/studies/leek_epidermis_bombardment/isa.study.xlsx
+++ b/studies/leek_epidermis_bombardment/isa.study.xlsx
--- a/studies/leek_epidermis_bombardment/protocols/.gitkeep
+++ b/studies/leek_epidermis_bombardment/protocols/.gitkeep
--- a/studies/leek_epidermis_bombardment/protocols/Leek_epidermis_bombardment_Pietsch.pdf
+++ b/studies/leek_epidermis_bombardment/protocols/Leek_epidermis_bombardment_Pietsch.pdf
--- a/studies/leek_epidermis_bombardment/resources/.gitkeep
+++ b/studies/leek_epidermis_bombardment/resources/.gitkeep
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