Directory Documentation

The workflows directory contains independent analysis directories, scripts, and intermediate data generated for the GWAS study. Each subdirectory focuses on a specific analysis or task.

The central documentation references these directories according to their respective analysis sequences.

Structure

workflows/
│
├── admixture_plots/
├── climate_factor_intersections/
├── genetic_diversity/
├── gwas_gapit_pipeline/
├── manuscript_figures/
├── phenotype_distribution_plots/
├── phenotype_pca_and_hc/
├── phylogeny_based_GBS/
├── preprocessing_data/
└── snp_gene_neighborhood_pipeline/