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  • usadellab/cplantbox_simulations
  • ceplas/cplantbox_simulations
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assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree.xml 0 → 100644
View file @ fcdabcab
<?xml version="1.0" encoding="UTF-8"?>
<Plant name="maize" filetype="parameters">
<organ type="seed" subType="0">
<parameter name="seedPos.x" value="0"/>
<parameter name="seedPos.y" value="0"/>
<parameter name="seedPos.z" value="-3"/>
<parameter name="plantingdepth" value="3"/>
<parameter name="firstB" value="0" dev="0"/>
<parameter name="delayB" value="0" dev="0"/>
<parameter name="maxB" value="7" dev="0"/>
<parameter name="nC" value="2"/>
<parameter name="nz" value="0"/>
<parameter name="firstSB" value="14" dev="0"/>
<parameter name="delaySB" value="0" dev="0"/>
<parameter name="delayRC" value="7" dev="0"/>
<parameter name="simulationTime" value="56" dev="0"/>
</organ>
<organ type="root" name="taproot" subType="1">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="299" dev="31.794039999999999"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.1"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="lateral1" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1.76" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1.76" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.34999999999999998" dev="0.035000000000000003"/>
<parameter name="a" value="0.012500000000000001" dev="0.00125"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="lateral2" subType="3">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="6.0099999999999998" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="6.0099999999999998" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.40000000000000002" dev="0.040000000000000001"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="nodal_root" subType="4">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="0.10000000000000001"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="15.9"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="150" dev="1"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.80000000000000004" dev="0.15708"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="shoot_borne_root" subType="5">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="59.049999999999997" dev="5.9000000000000004"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="99.099999999999994" dev="11.798038000000002"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.1140399999999999" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="stem" name="mainstem" subType="1">
<parameter name="lb" value="30" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="2" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="1.0000000000000001e-05" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="120" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="10" dev="0"/>
<parameter name="r" value="2" dev="0.45000000000000001"/>
<parameter name="a" value="0.6" dev="0.2"/>
<parameter name="RotBeta" value="0.2"/>
<parameter name="BetaDev" value="0.1"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="0"/>
<parameter name="tropismN" value="0"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="3" percentage="1"/>
</organ>
<organ type="stem" name="1stbranch" subType="3">
<parameter name="lb" value="5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="8"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="5" dev="2.6666666666666665"/>
<parameter name="r" value="1" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.1"/>
<parameter name="RotBeta" value="0.4"/>
<parameter name="BetaDev" value="0.3"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="4"/>
<parameter name="tropismS" value="0.01"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.3" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="stem" name="bud" subType="2">
<!--brach is not growing here, but leaves, leave always grow at the 2nd branch of stem, which is subtype 2-->
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="2" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.1"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="stem" name="bud_branch" subType="4">
<parameter name="lb" value="1" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.1" dev="0.035000000000000003"/>
<parameter name="a" value="0.1" dev="0.03"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="8"/>
<parameter name="tropismS" value="0.05"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.3" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="1"/>
</organ>
<organ type="leaf" name="midrib" subType="2">
<parameter name="lb" value="0.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.2" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.1" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="3" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.1" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0.0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="1.5"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.4" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="leaf" name="veins" subType="4">
<parameter name="lb" value="1.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.2" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="5"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.05" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="1.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.4" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
</Plant>
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree00.xml 0 → 100644
View file @ fcdabcab
<Plant filetype="parameters" name="maize">
<organ subType="0" type="seed">
<parameter name="seedPos.x" value="0" />
<parameter name="seedPos.y" value="0" />
<parameter name="seedPos.z" value="-3" />
<parameter name="plantingdepth" value="3" />
<parameter dev="0" name="firstB" value="0" />
<parameter dev="0" name="delayB" value="0" />
<parameter dev="0" name="maxB" value="7" />
<parameter name="nC" value="2" />
<parameter name="nz" value="0" />
<parameter dev="0" name="firstSB" value="14" />
<parameter dev="0" name="delaySB" value="0" />
<parameter dev="0" name="delayRC" value="7" />
<parameter dev="0" name="simulationTime" value="56" />
</organ>
<organ name="taproot" subType="1" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="0" name="lmax" value="159" />
<parameter dev="31.794039999999999" name="nob" value="299" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.1" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="lateral1" subType="2" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="1.76" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1.76" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.34999999999999998" />
<parameter dev="0.00125" name="a" value="0.012500000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="lateral2" subType="3" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="6.0099999999999998" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="6.0099999999999998" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.040000000000000001" name="r" value="0.40000000000000002" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="nodal_root" subType="4" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="0.10000000000000001" name="ln" value="1" />
<parameter dev="15.9" name="lmax" value="159" />
<parameter dev="1" name="nob" value="150" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.15708" name="theta" value="0.80000000000000004" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="shoot_borne_root" subType="5" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="5.9000000000000004" name="lmax" value="59.049999999999997" />
<parameter dev="11.798038000000002" name="nob" value="99.099999999999994" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1.1140399999999999" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="mainstem" subType="1" type="stem">
<parameter dev="0" name="lb" value="30" />
<parameter dev="0" name="la" value="2" />
<parameter dev="1.0000000000000001e-05" functiontype="1" name="ln" value="1" />
<parameter dev="0" name="lmax" value="120" />
<parameter dev="0" name="nob" value="10" />
<parameter dev="0.45000000000000001" name="r" value="2" />
<parameter dev="0.2" name="a" value="0.6" />
<parameter name="RotBeta" value="0.2" />
<parameter name="BetaDev" value="0.1" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="0" />
<parameter name="tropismN" value="0" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="3" />
</organ>
<organ name="1stbranch" subType="3" type="stem">
<parameter dev="0" name="lb" value="5" />
<parameter dev="0" name="la" value="1" />
<parameter dev="0" functiontype="1" name="ln" value="2" />
<parameter dev="8" name="lmax" value="70" />
<parameter dev="2.6666666666666665" name="nob" value="5" />
<parameter dev="0.035000000000000003" name="r" value="1" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0.4" />
<parameter name="BetaDev" value="0.3" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="4" />
<parameter name="tropismS" value="0.01" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="bud" subType="2" type="stem">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="1" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="2" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.10000000000000001" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="bud_branch" subType="4" type="stem">
<parameter dev="0" name="lb" value="1" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="3" name="ln" value="2" />
<parameter dev="0" name="lmax" value="70" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.1" />
<parameter dev="0.03" name="a" value="0.1" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="8" />
<parameter name="tropismS" value="0.05" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="2" />
</organ>
<organ name="midrib" subType="2" type="leaf">
<parameter dev="0" name="lb" value="0.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="3" name="ln" value="0.1" />
<parameter dev="0" name="lmax" value="3" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.1" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0.0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="1.5" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="veins" subType="4" type="leaf">
<parameter dev="0" name="lb" value="1.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="5" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.05" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="1.5" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
</Plant>
\ No newline at end of file
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree00_new.xml 0 → 100644
View file @ fcdabcab
<?xml version="1.0" encoding="UTF-8"?>
<Plant name="CPlantBox_test_leaf_tree00_new" filetype="parameters">
<organ type="seed" name="true" subType="0">
<parameter name="seedPos.x" value="0"/>
<parameter name="seedPos.y" value="0"/>
<parameter name="seedPos.z" value="-3"/>
<parameter name="plantingdepth" value="3"/>
<parameter name="firstB" value="0" dev="0"/>
<parameter name="delayB" value="0" dev="0"/>
<parameter name="maxB" value="7" dev="0"/>
<parameter name="maxTi" value="0" dev="0"/>
<parameter name="nC" value="2"/>
<parameter name="nz" value="0"/>
<parameter name="firstSB" value="14" dev="0"/>
<parameter name="delaySB" value="0" dev="0"/>
<parameter name="delayRC" value="7" dev="0"/>
<parameter name="simulationTime" value="56" dev="0"/>
</organ>
<organ type="root" name="taproot" subType="1">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="299" dev="0"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="lateral1" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1.76" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1.76" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.34999999999999998" dev="0.035000000000000003"/>
<parameter name="a" value="0.012500000000000001" dev="0.00125"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="lateral2" subType="3">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="6.0099999999999998" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="6.0099999999999998" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.40000000000000002" dev="0.040000000000000001"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="nodal_root" subType="4">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="0.10000000000000001"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="15.9"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="150" dev="1"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.80000000000000004" dev="0.15708"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="shoot_borne_root" subType="5">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="59.049999999999997" dev="5.9000000000000004"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="99.099999999999994" dev="11.798038000000002"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.1140399999999999" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="stem" name="mainstem" subType="1">
<parameter name="lb" value="30" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="2" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="1.0000000000000001e-05" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="120" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="89" dev="0"/>
<parameter name="r" value="2" dev="0.45000000000000001"/>
<parameter name="a" value="0.59999999999999998" dev="0.20000000000000001"/>
<parameter name="RotBeta" value="0.20000000000000001"/>
<parameter name="BetaDev" value="0.10000000000000001"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="0"/>
<parameter name="tropismN" value="0"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="3" percentage="1"/>
</organ>
<organ type="stem" name="1stbranch" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="2" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="stem" name="2ndbranch" subType="3">
<parameter name="lb" value="5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="8"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="33" dev="4"/>
<parameter name="r" value="1" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0.40000000000000002"/>
<parameter name="BetaDev" value="0.29999999999999999"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="4"/>
<parameter name="tropismS" value="0.01"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="stem" name="otherbranch1" subType="4">
<parameter name="lb" value="1" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="35.5" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0.035000000000000003"/>
<parameter name="a" value="0.10000000000000001" dev="0.029999999999999999"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="8"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="1"/>
</organ>
<organ type="leaf" name="lateral1" subType="2">
<parameter name="lb" value="0.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.10000000000000001" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="3" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="23.999999999999996" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="leaf" name="nodal_root" subType="4">
<parameter name="lb" value="1.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="5"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.050000000000000003" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="1.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
</Plant>
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree01.xml 0 → 100644
View file @ fcdabcab
<Plant filetype="parameters" name="maize">
<organ subType="0" type="seed">
<parameter name="seedPos.x" value="0" />
<parameter name="seedPos.y" value="40" />
<parameter name="seedPos.z" value="-3" />
<parameter name="plantingdepth" value="3" />
<parameter dev="0" name="firstB" value="0" />
<parameter dev="0" name="delayB" value="0" />
<parameter dev="0" name="maxB" value="7" />
<parameter name="nC" value="2" />
<parameter name="nz" value="0" />
<parameter dev="0" name="firstSB" value="14" />
<parameter dev="0" name="delaySB" value="0" />
<parameter dev="0" name="delayRC" value="7" />
<parameter dev="0" name="simulationTime" value="56" />
</organ>
<organ name="taproot" subType="1" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="0" name="lmax" value="159" />
<parameter dev="31.794039999999999" name="nob" value="299" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.1" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="lateral1" subType="2" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="1.76" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1.76" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.34999999999999998" />
<parameter dev="0.00125" name="a" value="0.012500000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="lateral2" subType="3" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="6.0099999999999998" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="6.0099999999999998" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.040000000000000001" name="r" value="0.40000000000000002" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="nodal_root" subType="4" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="0.10000000000000001" name="ln" value="1" />
<parameter dev="15.9" name="lmax" value="159" />
<parameter dev="1" name="nob" value="150" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.15708" name="theta" value="0.80000000000000004" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="shoot_borne_root" subType="5" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="5.9000000000000004" name="lmax" value="59.049999999999997" />
<parameter dev="11.798038000000002" name="nob" value="99.099999999999994" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1.1140399999999999" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="mainstem" subType="1" type="stem">
<parameter dev="0" name="lb" value="30" />
<parameter dev="0" name="la" value="2" />
<parameter dev="1.0000000000000001e-05" functiontype="1" name="ln" value="1" />
<parameter dev="0" name="lmax" value="120" />
<parameter dev="0" name="nob" value="10" />
<parameter dev="0.45000000000000001" name="r" value="2" />
<parameter dev="0.2" name="a" value="0.6" />
<parameter name="RotBeta" value="0.2" />
<parameter name="BetaDev" value="0.1" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="0" />
<parameter name="tropismN" value="0" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="3" />
</organ>
<organ name="1stbranch" subType="3" type="stem">
<parameter dev="0" name="lb" value="5" />
<parameter dev="0" name="la" value="1" />
<parameter dev="0" functiontype="1" name="ln" value="2" />
<parameter dev="8" name="lmax" value="70" />
<parameter dev="2.6666666666666665" name="nob" value="5" />
<parameter dev="0.035000000000000003" name="r" value="1" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0.4" />
<parameter name="BetaDev" value="0.3" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="4" />
<parameter name="tropismS" value="0.01" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="bud" subType="2" type="stem">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="1" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="2" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.10000000000000001" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="bud_branch" subType="4" type="stem">
<parameter dev="0" name="lb" value="1" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="3" name="ln" value="2" />
<parameter dev="0" name="lmax" value="70" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.1" />
<parameter dev="0.03" name="a" value="0.1" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="8" />
<parameter name="tropismS" value="0.05" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="2" />
</organ>
<organ name="midrib" subType="2" type="leaf">
<parameter dev="0" name="lb" value="0.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="3" name="ln" value="0.1" />
<parameter dev="0" name="lmax" value="3" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.1" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0.0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="1.5" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="veins" subType="4" type="leaf">
<parameter dev="0" name="lb" value="1.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="5" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.05" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="1.5" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
</Plant>
\ No newline at end of file
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree01_new.xml 0 → 100644
View file @ fcdabcab
<?xml version="1.0" encoding="UTF-8"?>
<Plant name="CPlantBox_test_leaf_tree01_new" filetype="parameters">
<organ type="seed" name="true" subType="0">
<parameter name="seedPos.x" value="0"/>
<parameter name="seedPos.y" value="40"/>
<parameter name="seedPos.z" value="-3"/>
<parameter name="plantingdepth" value="3"/>
<parameter name="firstB" value="0" dev="0"/>
<parameter name="delayB" value="0" dev="0"/>
<parameter name="maxB" value="7" dev="0"/>
<parameter name="maxTi" value="0" dev="0"/>
<parameter name="nC" value="2"/>
<parameter name="nz" value="0"/>
<parameter name="firstSB" value="14" dev="0"/>
<parameter name="delaySB" value="0" dev="0"/>
<parameter name="delayRC" value="7" dev="0"/>
<parameter name="simulationTime" value="56" dev="0"/>
</organ>
<organ type="root" name="taproot" subType="1">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="299" dev="0"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="lateral1" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1.76" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1.76" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.34999999999999998" dev="0.035000000000000003"/>
<parameter name="a" value="0.012500000000000001" dev="0.00125"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="lateral2" subType="3">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="6.0099999999999998" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="6.0099999999999998" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.40000000000000002" dev="0.040000000000000001"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="nodal_root" subType="4">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="0.10000000000000001"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="15.9"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="150" dev="1"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.80000000000000004" dev="0.15708"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="shoot_borne_root" subType="5">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="59.049999999999997" dev="5.9000000000000004"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="99.099999999999994" dev="11.798038000000002"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.1140399999999999" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="stem" name="mainstem" subType="1">
<parameter name="lb" value="30" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="2" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="1.0000000000000001e-05" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="120" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="89" dev="0"/>
<parameter name="r" value="2" dev="0.45000000000000001"/>
<parameter name="a" value="0.59999999999999998" dev="0.20000000000000001"/>
<parameter name="RotBeta" value="0.20000000000000001"/>
<parameter name="BetaDev" value="0.10000000000000001"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="0"/>
<parameter name="tropismN" value="0"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="3" percentage="1"/>
</organ>
<organ type="stem" name="1stbranch" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="2" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="stem" name="2ndbranch" subType="3">
<parameter name="lb" value="5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="8"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="33" dev="4"/>
<parameter name="r" value="1" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0.40000000000000002"/>
<parameter name="BetaDev" value="0.29999999999999999"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="4"/>
<parameter name="tropismS" value="0.01"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="stem" name="otherbranch1" subType="4">
<parameter name="lb" value="1" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="35.5" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0.035000000000000003"/>
<parameter name="a" value="0.10000000000000001" dev="0.029999999999999999"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="8"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="1"/>
</organ>
<organ type="leaf" name="lateral1" subType="2">
<parameter name="lb" value="0.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.10000000000000001" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="3" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="23.999999999999996" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="leaf" name="nodal_root" subType="4">
<parameter name="lb" value="1.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="5"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.050000000000000003" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="1.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
</Plant>
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree02.xml 0 → 100644
View file @ fcdabcab
<Plant filetype="parameters" name="maize">
<organ subType="0" type="seed">
<parameter name="seedPos.x" value="0" />
<parameter name="seedPos.y" value="80" />
<parameter name="seedPos.z" value="-3" />
<parameter name="plantingdepth" value="3" />
<parameter dev="0" name="firstB" value="0" />
<parameter dev="0" name="delayB" value="0" />
<parameter dev="0" name="maxB" value="7" />
<parameter name="nC" value="2" />
<parameter name="nz" value="0" />
<parameter dev="0" name="firstSB" value="14" />
<parameter dev="0" name="delaySB" value="0" />
<parameter dev="0" name="delayRC" value="7" />
<parameter dev="0" name="simulationTime" value="56" />
</organ>
<organ name="taproot" subType="1" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="0" name="lmax" value="159" />
<parameter dev="31.794039999999999" name="nob" value="299" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.1" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="lateral1" subType="2" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="1.76" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1.76" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.34999999999999998" />
<parameter dev="0.00125" name="a" value="0.012500000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="lateral2" subType="3" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="6.0099999999999998" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="6.0099999999999998" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.040000000000000001" name="r" value="0.40000000000000002" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="nodal_root" subType="4" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="0.10000000000000001" name="ln" value="1" />
<parameter dev="15.9" name="lmax" value="159" />
<parameter dev="1" name="nob" value="150" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.15708" name="theta" value="0.80000000000000004" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="shoot_borne_root" subType="5" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="5.9000000000000004" name="lmax" value="59.049999999999997" />
<parameter dev="11.798038000000002" name="nob" value="99.099999999999994" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1.1140399999999999" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="mainstem" subType="1" type="stem">
<parameter dev="0" name="lb" value="30" />
<parameter dev="0" name="la" value="2" />
<parameter dev="1.0000000000000001e-05" functiontype="1" name="ln" value="1" />
<parameter dev="0" name="lmax" value="120" />
<parameter dev="0" name="nob" value="10" />
<parameter dev="0.45000000000000001" name="r" value="2" />
<parameter dev="0.2" name="a" value="0.6" />
<parameter name="RotBeta" value="0.2" />
<parameter name="BetaDev" value="0.1" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="0" />
<parameter name="tropismN" value="0" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="3" />
</organ>
<organ name="1stbranch" subType="3" type="stem">
<parameter dev="0" name="lb" value="5" />
<parameter dev="0" name="la" value="1" />
<parameter dev="0" functiontype="1" name="ln" value="2" />
<parameter dev="8" name="lmax" value="70" />
<parameter dev="2.6666666666666665" name="nob" value="5" />
<parameter dev="0.035000000000000003" name="r" value="1" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0.4" />
<parameter name="BetaDev" value="0.3" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="4" />
<parameter name="tropismS" value="0.01" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="bud" subType="2" type="stem">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="1" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="2" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.10000000000000001" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="bud_branch" subType="4" type="stem">
<parameter dev="0" name="lb" value="1" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="3" name="ln" value="2" />
<parameter dev="0" name="lmax" value="70" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.1" />
<parameter dev="0.03" name="a" value="0.1" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="8" />
<parameter name="tropismS" value="0.05" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="2" />
</organ>
<organ name="midrib" subType="2" type="leaf">
<parameter dev="0" name="lb" value="0.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="3" name="ln" value="0.1" />
<parameter dev="0" name="lmax" value="3" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.1" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0.0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="1.5" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="veins" subType="4" type="leaf">
<parameter dev="0" name="lb" value="1.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="5" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.05" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="1.5" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
</Plant>
\ No newline at end of file
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree02_new.xml 0 → 100644
View file @ fcdabcab
<?xml version="1.0" encoding="UTF-8"?>
<Plant name="CPlantBox_test_leaf_tree02_new" filetype="parameters">
<organ type="seed" name="true" subType="0">
<parameter name="seedPos.x" value="0"/>
<parameter name="seedPos.y" value="80"/>
<parameter name="seedPos.z" value="-3"/>
<parameter name="plantingdepth" value="3"/>
<parameter name="firstB" value="0" dev="0"/>
<parameter name="delayB" value="0" dev="0"/>
<parameter name="maxB" value="7" dev="0"/>
<parameter name="maxTi" value="0" dev="0"/>
<parameter name="nC" value="2"/>
<parameter name="nz" value="0"/>
<parameter name="firstSB" value="14" dev="0"/>
<parameter name="delaySB" value="0" dev="0"/>
<parameter name="delayRC" value="7" dev="0"/>
<parameter name="simulationTime" value="56" dev="0"/>
</organ>
<organ type="root" name="taproot" subType="1">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="299" dev="0"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="lateral1" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1.76" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1.76" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.34999999999999998" dev="0.035000000000000003"/>
<parameter name="a" value="0.012500000000000001" dev="0.00125"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="lateral2" subType="3">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="6.0099999999999998" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="6.0099999999999998" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.40000000000000002" dev="0.040000000000000001"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="nodal_root" subType="4">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="0.10000000000000001"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="15.9"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="150" dev="1"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.80000000000000004" dev="0.15708"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="shoot_borne_root" subType="5">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="59.049999999999997" dev="5.9000000000000004"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="99.099999999999994" dev="11.798038000000002"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.1140399999999999" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="stem" name="mainstem" subType="1">
<parameter name="lb" value="30" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="2" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="1.0000000000000001e-05" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="120" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="89" dev="0"/>
<parameter name="r" value="2" dev="0.45000000000000001"/>
<parameter name="a" value="0.59999999999999998" dev="0.20000000000000001"/>
<parameter name="RotBeta" value="0.20000000000000001"/>
<parameter name="BetaDev" value="0.10000000000000001"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="0"/>
<parameter name="tropismN" value="0"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="3" percentage="1"/>
</organ>
<organ type="stem" name="1stbranch" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="2" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="stem" name="2ndbranch" subType="3">
<parameter name="lb" value="5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="8"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="33" dev="4"/>
<parameter name="r" value="1" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0.40000000000000002"/>
<parameter name="BetaDev" value="0.29999999999999999"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="4"/>
<parameter name="tropismS" value="0.01"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="stem" name="otherbranch1" subType="4">
<parameter name="lb" value="1" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="35.5" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0.035000000000000003"/>
<parameter name="a" value="0.10000000000000001" dev="0.029999999999999999"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="8"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="1"/>
</organ>
<organ type="leaf" name="lateral1" subType="2">
<parameter name="lb" value="0.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.10000000000000001" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="3" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="23.999999999999996" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="leaf" name="nodal_root" subType="4">
<parameter name="lb" value="1.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="5"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.050000000000000003" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="1.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
</Plant>
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree10.xml 0 → 100644
View file @ fcdabcab
<Plant filetype="parameters" name="maize">
<organ subType="0" type="seed">
<parameter name="seedPos.x" value="40" />
<parameter name="seedPos.y" value="0" />
<parameter name="seedPos.z" value="-3" />
<parameter name="plantingdepth" value="3" />
<parameter dev="0" name="firstB" value="0" />
<parameter dev="0" name="delayB" value="0" />
<parameter dev="0" name="maxB" value="7" />
<parameter name="nC" value="2" />
<parameter name="nz" value="0" />
<parameter dev="0" name="firstSB" value="14" />
<parameter dev="0" name="delaySB" value="0" />
<parameter dev="0" name="delayRC" value="7" />
<parameter dev="0" name="simulationTime" value="56" />
</organ>
<organ name="taproot" subType="1" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="0" name="lmax" value="159" />
<parameter dev="31.794039999999999" name="nob" value="299" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.1" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="lateral1" subType="2" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="1.76" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1.76" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.34999999999999998" />
<parameter dev="0.00125" name="a" value="0.012500000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="lateral2" subType="3" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="6.0099999999999998" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="6.0099999999999998" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.040000000000000001" name="r" value="0.40000000000000002" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="nodal_root" subType="4" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="0.10000000000000001" name="ln" value="1" />
<parameter dev="15.9" name="lmax" value="159" />
<parameter dev="1" name="nob" value="150" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.15708" name="theta" value="0.80000000000000004" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="shoot_borne_root" subType="5" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="5.9000000000000004" name="lmax" value="59.049999999999997" />
<parameter dev="11.798038000000002" name="nob" value="99.099999999999994" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1.1140399999999999" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="mainstem" subType="1" type="stem">
<parameter dev="0" name="lb" value="30" />
<parameter dev="0" name="la" value="2" />
<parameter dev="1.0000000000000001e-05" functiontype="1" name="ln" value="1" />
<parameter dev="0" name="lmax" value="120" />
<parameter dev="0" name="nob" value="10" />
<parameter dev="0.45000000000000001" name="r" value="2" />
<parameter dev="0.2" name="a" value="0.6" />
<parameter name="RotBeta" value="0.2" />
<parameter name="BetaDev" value="0.1" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="0" />
<parameter name="tropismN" value="0" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="3" />
</organ>
<organ name="1stbranch" subType="3" type="stem">
<parameter dev="0" name="lb" value="5" />
<parameter dev="0" name="la" value="1" />
<parameter dev="0" functiontype="1" name="ln" value="2" />
<parameter dev="8" name="lmax" value="70" />
<parameter dev="2.6666666666666665" name="nob" value="5" />
<parameter dev="0.035000000000000003" name="r" value="1" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0.4" />
<parameter name="BetaDev" value="0.3" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="4" />
<parameter name="tropismS" value="0.01" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="bud" subType="2" type="stem">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="1" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="2" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.10000000000000001" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="bud_branch" subType="4" type="stem">
<parameter dev="0" name="lb" value="1" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="3" name="ln" value="2" />
<parameter dev="0" name="lmax" value="70" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.1" />
<parameter dev="0.03" name="a" value="0.1" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="8" />
<parameter name="tropismS" value="0.05" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="2" />
</organ>
<organ name="midrib" subType="2" type="leaf">
<parameter dev="0" name="lb" value="0.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="3" name="ln" value="0.1" />
<parameter dev="0" name="lmax" value="3" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.1" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0.0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="1.5" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="veins" subType="4" type="leaf">
<parameter dev="0" name="lb" value="1.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="5" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.05" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="1.5" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
</Plant>
\ No newline at end of file
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree10_new.xml 0 → 100644
View file @ fcdabcab
<?xml version="1.0" encoding="UTF-8"?>
<Plant name="CPlantBox_test_leaf_tree10_new" filetype="parameters">
<organ type="seed" name="true" subType="0">
<parameter name="seedPos.x" value="40"/>
<parameter name="seedPos.y" value="0"/>
<parameter name="seedPos.z" value="-3"/>
<parameter name="plantingdepth" value="3"/>
<parameter name="firstB" value="0" dev="0"/>
<parameter name="delayB" value="0" dev="0"/>
<parameter name="maxB" value="7" dev="0"/>
<parameter name="maxTi" value="0" dev="0"/>
<parameter name="nC" value="2"/>
<parameter name="nz" value="0"/>
<parameter name="firstSB" value="14" dev="0"/>
<parameter name="delaySB" value="0" dev="0"/>
<parameter name="delayRC" value="7" dev="0"/>
<parameter name="simulationTime" value="56" dev="0"/>
</organ>
<organ type="root" name="taproot" subType="1">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="299" dev="0"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="lateral1" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1.76" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1.76" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.34999999999999998" dev="0.035000000000000003"/>
<parameter name="a" value="0.012500000000000001" dev="0.00125"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="lateral2" subType="3">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="6.0099999999999998" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="6.0099999999999998" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.40000000000000002" dev="0.040000000000000001"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="nodal_root" subType="4">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="0.10000000000000001"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="15.9"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="150" dev="1"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.80000000000000004" dev="0.15708"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="shoot_borne_root" subType="5">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="59.049999999999997" dev="5.9000000000000004"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="99.099999999999994" dev="11.798038000000002"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.1140399999999999" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="stem" name="mainstem" subType="1">
<parameter name="lb" value="30" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="2" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="1.0000000000000001e-05" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="120" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="89" dev="0"/>
<parameter name="r" value="2" dev="0.45000000000000001"/>
<parameter name="a" value="0.59999999999999998" dev="0.20000000000000001"/>
<parameter name="RotBeta" value="0.20000000000000001"/>
<parameter name="BetaDev" value="0.10000000000000001"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="0"/>
<parameter name="tropismN" value="0"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="3" percentage="1"/>
</organ>
<organ type="stem" name="1stbranch" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="2" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="stem" name="2ndbranch" subType="3">
<parameter name="lb" value="5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="8"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="33" dev="4"/>
<parameter name="r" value="1" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0.40000000000000002"/>
<parameter name="BetaDev" value="0.29999999999999999"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="4"/>
<parameter name="tropismS" value="0.01"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="stem" name="otherbranch1" subType="4">
<parameter name="lb" value="1" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="35.5" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0.035000000000000003"/>
<parameter name="a" value="0.10000000000000001" dev="0.029999999999999999"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="8"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="1"/>
</organ>
<organ type="leaf" name="lateral1" subType="2">
<parameter name="lb" value="0.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.10000000000000001" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="3" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="23.999999999999996" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="leaf" name="nodal_root" subType="4">
<parameter name="lb" value="1.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="5"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.050000000000000003" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="1.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
</Plant>
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree11.xml 0 → 100644
View file @ fcdabcab
<Plant filetype="parameters" name="maize">
<organ subType="0" type="seed">
<parameter name="seedPos.x" value="40" />
<parameter name="seedPos.y" value="40" />
<parameter name="seedPos.z" value="-3" />
<parameter name="plantingdepth" value="3" />
<parameter dev="0" name="firstB" value="0" />
<parameter dev="0" name="delayB" value="0" />
<parameter dev="0" name="maxB" value="7" />
<parameter name="nC" value="2" />
<parameter name="nz" value="0" />
<parameter dev="0" name="firstSB" value="14" />
<parameter dev="0" name="delaySB" value="0" />
<parameter dev="0" name="delayRC" value="7" />
<parameter dev="0" name="simulationTime" value="56" />
</organ>
<organ name="taproot" subType="1" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="0" name="lmax" value="159" />
<parameter dev="31.794039999999999" name="nob" value="299" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.1" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="lateral1" subType="2" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="1.76" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1.76" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.34999999999999998" />
<parameter dev="0.00125" name="a" value="0.012500000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="lateral2" subType="3" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="6.0099999999999998" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="6.0099999999999998" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.040000000000000001" name="r" value="0.40000000000000002" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="nodal_root" subType="4" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="0.10000000000000001" name="ln" value="1" />
<parameter dev="15.9" name="lmax" value="159" />
<parameter dev="1" name="nob" value="150" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.15708" name="theta" value="0.80000000000000004" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="shoot_borne_root" subType="5" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="5.9000000000000004" name="lmax" value="59.049999999999997" />
<parameter dev="11.798038000000002" name="nob" value="99.099999999999994" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1.1140399999999999" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="mainstem" subType="1" type="stem">
<parameter dev="0" name="lb" value="30" />
<parameter dev="0" name="la" value="2" />
<parameter dev="1.0000000000000001e-05" functiontype="1" name="ln" value="1" />
<parameter dev="0" name="lmax" value="120" />
<parameter dev="0" name="nob" value="10" />
<parameter dev="0.45000000000000001" name="r" value="2" />
<parameter dev="0.2" name="a" value="0.6" />
<parameter name="RotBeta" value="0.2" />
<parameter name="BetaDev" value="0.1" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="0" />
<parameter name="tropismN" value="0" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="3" />
</organ>
<organ name="1stbranch" subType="3" type="stem">
<parameter dev="0" name="lb" value="5" />
<parameter dev="0" name="la" value="1" />
<parameter dev="0" functiontype="1" name="ln" value="2" />
<parameter dev="8" name="lmax" value="70" />
<parameter dev="2.6666666666666665" name="nob" value="5" />
<parameter dev="0.035000000000000003" name="r" value="1" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0.4" />
<parameter name="BetaDev" value="0.3" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="4" />
<parameter name="tropismS" value="0.01" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="bud" subType="2" type="stem">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="1" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="2" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.10000000000000001" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="bud_branch" subType="4" type="stem">
<parameter dev="0" name="lb" value="1" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="3" name="ln" value="2" />
<parameter dev="0" name="lmax" value="70" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.1" />
<parameter dev="0.03" name="a" value="0.1" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="8" />
<parameter name="tropismS" value="0.05" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="2" />
</organ>
<organ name="midrib" subType="2" type="leaf">
<parameter dev="0" name="lb" value="0.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="3" name="ln" value="0.1" />
<parameter dev="0" name="lmax" value="3" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.1" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0.0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="1.5" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="veins" subType="4" type="leaf">
<parameter dev="0" name="lb" value="1.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="5" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.05" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="1.5" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
</Plant>
\ No newline at end of file
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree11_new.xml 0 → 100644
View file @ fcdabcab
<?xml version="1.0" encoding="UTF-8"?>
<Plant name="CPlantBox_test_leaf_tree11_new" filetype="parameters">
<organ type="seed" name="true" subType="0">
<parameter name="seedPos.x" value="40"/>
<parameter name="seedPos.y" value="40"/>
<parameter name="seedPos.z" value="-3"/>
<parameter name="plantingdepth" value="3"/>
<parameter name="firstB" value="0" dev="0"/>
<parameter name="delayB" value="0" dev="0"/>
<parameter name="maxB" value="7" dev="0"/>
<parameter name="maxTi" value="0" dev="0"/>
<parameter name="nC" value="2"/>
<parameter name="nz" value="0"/>
<parameter name="firstSB" value="14" dev="0"/>
<parameter name="delaySB" value="0" dev="0"/>
<parameter name="delayRC" value="7" dev="0"/>
<parameter name="simulationTime" value="56" dev="0"/>
</organ>
<organ type="root" name="taproot" subType="1">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="299" dev="0"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="lateral1" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1.76" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1.76" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.34999999999999998" dev="0.035000000000000003"/>
<parameter name="a" value="0.012500000000000001" dev="0.00125"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="lateral2" subType="3">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="6.0099999999999998" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="6.0099999999999998" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.40000000000000002" dev="0.040000000000000001"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="nodal_root" subType="4">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="0.10000000000000001"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="15.9"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="150" dev="1"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.80000000000000004" dev="0.15708"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="shoot_borne_root" subType="5">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="59.049999999999997" dev="5.9000000000000004"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="99.099999999999994" dev="11.798038000000002"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.1140399999999999" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="stem" name="mainstem" subType="1">
<parameter name="lb" value="30" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="2" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="1.0000000000000001e-05" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="120" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="89" dev="0"/>
<parameter name="r" value="2" dev="0.45000000000000001"/>
<parameter name="a" value="0.59999999999999998" dev="0.20000000000000001"/>
<parameter name="RotBeta" value="0.20000000000000001"/>
<parameter name="BetaDev" value="0.10000000000000001"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="0"/>
<parameter name="tropismN" value="0"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="3" percentage="1"/>
</organ>
<organ type="stem" name="1stbranch" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="2" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="stem" name="2ndbranch" subType="3">
<parameter name="lb" value="5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="8"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="33" dev="4"/>
<parameter name="r" value="1" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0.40000000000000002"/>
<parameter name="BetaDev" value="0.29999999999999999"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="4"/>
<parameter name="tropismS" value="0.01"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="stem" name="otherbranch1" subType="4">
<parameter name="lb" value="1" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="35.5" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0.035000000000000003"/>
<parameter name="a" value="0.10000000000000001" dev="0.029999999999999999"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="8"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="1"/>
</organ>
<organ type="leaf" name="lateral1" subType="2">
<parameter name="lb" value="0.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.10000000000000001" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="3" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="23.999999999999996" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="leaf" name="nodal_root" subType="4">
<parameter name="lb" value="1.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="5"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.050000000000000003" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="1.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
</Plant>
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree12.xml 0 → 100644
View file @ fcdabcab
<Plant filetype="parameters" name="maize">
<organ subType="0" type="seed">
<parameter name="seedPos.x" value="40" />
<parameter name="seedPos.y" value="80" />
<parameter name="seedPos.z" value="-3" />
<parameter name="plantingdepth" value="3" />
<parameter dev="0" name="firstB" value="0" />
<parameter dev="0" name="delayB" value="0" />
<parameter dev="0" name="maxB" value="7" />
<parameter name="nC" value="2" />
<parameter name="nz" value="0" />
<parameter dev="0" name="firstSB" value="14" />
<parameter dev="0" name="delaySB" value="0" />
<parameter dev="0" name="delayRC" value="7" />
<parameter dev="0" name="simulationTime" value="56" />
</organ>
<organ name="taproot" subType="1" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="0" name="lmax" value="159" />
<parameter dev="31.794039999999999" name="nob" value="299" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.1" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="lateral1" subType="2" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="1.76" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1.76" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.34999999999999998" />
<parameter dev="0.00125" name="a" value="0.012500000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="lateral2" subType="3" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="6.0099999999999998" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="6.0099999999999998" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.040000000000000001" name="r" value="0.40000000000000002" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="nodal_root" subType="4" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="0.10000000000000001" name="ln" value="1" />
<parameter dev="15.9" name="lmax" value="159" />
<parameter dev="1" name="nob" value="150" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.15708" name="theta" value="0.80000000000000004" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="shoot_borne_root" subType="5" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="5.9000000000000004" name="lmax" value="59.049999999999997" />
<parameter dev="11.798038000000002" name="nob" value="99.099999999999994" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1.1140399999999999" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="mainstem" subType="1" type="stem">
<parameter dev="0" name="lb" value="30" />
<parameter dev="0" name="la" value="2" />
<parameter dev="1.0000000000000001e-05" functiontype="1" name="ln" value="1" />
<parameter dev="0" name="lmax" value="120" />
<parameter dev="0" name="nob" value="10" />
<parameter dev="0.45000000000000001" name="r" value="2" />
<parameter dev="0.2" name="a" value="0.6" />
<parameter name="RotBeta" value="0.2" />
<parameter name="BetaDev" value="0.1" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="0" />
<parameter name="tropismN" value="0" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="3" />
</organ>
<organ name="1stbranch" subType="3" type="stem">
<parameter dev="0" name="lb" value="5" />
<parameter dev="0" name="la" value="1" />
<parameter dev="0" functiontype="1" name="ln" value="2" />
<parameter dev="8" name="lmax" value="70" />
<parameter dev="2.6666666666666665" name="nob" value="5" />
<parameter dev="0.035000000000000003" name="r" value="1" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0.4" />
<parameter name="BetaDev" value="0.3" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="4" />
<parameter name="tropismS" value="0.01" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="bud" subType="2" type="stem">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="1" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="2" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.10000000000000001" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="bud_branch" subType="4" type="stem">
<parameter dev="0" name="lb" value="1" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="3" name="ln" value="2" />
<parameter dev="0" name="lmax" value="70" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.1" />
<parameter dev="0.03" name="a" value="0.1" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="8" />
<parameter name="tropismS" value="0.05" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="2" />
</organ>
<organ name="midrib" subType="2" type="leaf">
<parameter dev="0" name="lb" value="0.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="3" name="ln" value="0.1" />
<parameter dev="0" name="lmax" value="3" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.1" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0.0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="1.5" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="veins" subType="4" type="leaf">
<parameter dev="0" name="lb" value="1.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="5" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.05" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="1.5" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
</Plant>
\ No newline at end of file
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree12_new.xml 0 → 100644
View file @ fcdabcab
<?xml version="1.0" encoding="UTF-8"?>
<Plant name="CPlantBox_test_leaf_tree12_new" filetype="parameters">
<organ type="seed" name="true" subType="0">
<parameter name="seedPos.x" value="40"/>
<parameter name="seedPos.y" value="80"/>
<parameter name="seedPos.z" value="-3"/>
<parameter name="plantingdepth" value="3"/>
<parameter name="firstB" value="0" dev="0"/>
<parameter name="delayB" value="0" dev="0"/>
<parameter name="maxB" value="7" dev="0"/>
<parameter name="maxTi" value="0" dev="0"/>
<parameter name="nC" value="2"/>
<parameter name="nz" value="0"/>
<parameter name="firstSB" value="14" dev="0"/>
<parameter name="delaySB" value="0" dev="0"/>
<parameter name="delayRC" value="7" dev="0"/>
<parameter name="simulationTime" value="56" dev="0"/>
</organ>
<organ type="root" name="taproot" subType="1">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="299" dev="0"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="lateral1" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1.76" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1.76" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.34999999999999998" dev="0.035000000000000003"/>
<parameter name="a" value="0.012500000000000001" dev="0.00125"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="lateral2" subType="3">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="6.0099999999999998" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="6.0099999999999998" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.40000000000000002" dev="0.040000000000000001"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="nodal_root" subType="4">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="0.10000000000000001"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="15.9"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="150" dev="1"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.80000000000000004" dev="0.15708"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="shoot_borne_root" subType="5">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="59.049999999999997" dev="5.9000000000000004"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="99.099999999999994" dev="11.798038000000002"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.1140399999999999" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="stem" name="mainstem" subType="1">
<parameter name="lb" value="30" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="2" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="1.0000000000000001e-05" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="120" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="89" dev="0"/>
<parameter name="r" value="2" dev="0.45000000000000001"/>
<parameter name="a" value="0.59999999999999998" dev="0.20000000000000001"/>
<parameter name="RotBeta" value="0.20000000000000001"/>
<parameter name="BetaDev" value="0.10000000000000001"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="0"/>
<parameter name="tropismN" value="0"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="3" percentage="1"/>
</organ>
<organ type="stem" name="1stbranch" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="2" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="stem" name="2ndbranch" subType="3">
<parameter name="lb" value="5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="8"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="33" dev="4"/>
<parameter name="r" value="1" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0.40000000000000002"/>
<parameter name="BetaDev" value="0.29999999999999999"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="4"/>
<parameter name="tropismS" value="0.01"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="stem" name="otherbranch1" subType="4">
<parameter name="lb" value="1" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="35.5" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0.035000000000000003"/>
<parameter name="a" value="0.10000000000000001" dev="0.029999999999999999"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="8"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="1"/>
</organ>
<organ type="leaf" name="lateral1" subType="2">
<parameter name="lb" value="0.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.10000000000000001" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="3" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="23.999999999999996" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="leaf" name="nodal_root" subType="4">
<parameter name="lb" value="1.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="5"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.050000000000000003" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="1.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
</Plant>
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree20.xml 0 → 100644
View file @ fcdabcab
<Plant filetype="parameters" name="maize">
<organ subType="0" type="seed">
<parameter name="seedPos.x" value="80" />
<parameter name="seedPos.y" value="0" />
<parameter name="seedPos.z" value="-3" />
<parameter name="plantingdepth" value="3" />
<parameter dev="0" name="firstB" value="0" />
<parameter dev="0" name="delayB" value="0" />
<parameter dev="0" name="maxB" value="7" />
<parameter name="nC" value="2" />
<parameter name="nz" value="0" />
<parameter dev="0" name="firstSB" value="14" />
<parameter dev="0" name="delaySB" value="0" />
<parameter dev="0" name="delayRC" value="7" />
<parameter dev="0" name="simulationTime" value="56" />
</organ>
<organ name="taproot" subType="1" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="0" name="lmax" value="159" />
<parameter dev="31.794039999999999" name="nob" value="299" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.1" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="lateral1" subType="2" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="1.76" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1.76" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.34999999999999998" />
<parameter dev="0.00125" name="a" value="0.012500000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="lateral2" subType="3" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="6.0099999999999998" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="6.0099999999999998" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.040000000000000001" name="r" value="0.40000000000000002" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="nodal_root" subType="4" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="0.10000000000000001" name="ln" value="1" />
<parameter dev="15.9" name="lmax" value="159" />
<parameter dev="1" name="nob" value="150" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.15708" name="theta" value="0.80000000000000004" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="shoot_borne_root" subType="5" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="5.9000000000000004" name="lmax" value="59.049999999999997" />
<parameter dev="11.798038000000002" name="nob" value="99.099999999999994" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1.1140399999999999" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="mainstem" subType="1" type="stem">
<parameter dev="0" name="lb" value="30" />
<parameter dev="0" name="la" value="2" />
<parameter dev="1.0000000000000001e-05" functiontype="1" name="ln" value="1" />
<parameter dev="0" name="lmax" value="120" />
<parameter dev="0" name="nob" value="10" />
<parameter dev="0.45000000000000001" name="r" value="2" />
<parameter dev="0.2" name="a" value="0.6" />
<parameter name="RotBeta" value="0.2" />
<parameter name="BetaDev" value="0.1" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="0" />
<parameter name="tropismN" value="0" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="3" />
</organ>
<organ name="1stbranch" subType="3" type="stem">
<parameter dev="0" name="lb" value="5" />
<parameter dev="0" name="la" value="1" />
<parameter dev="0" functiontype="1" name="ln" value="2" />
<parameter dev="8" name="lmax" value="70" />
<parameter dev="2.6666666666666665" name="nob" value="5" />
<parameter dev="0.035000000000000003" name="r" value="1" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0.4" />
<parameter name="BetaDev" value="0.3" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="4" />
<parameter name="tropismS" value="0.01" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="bud" subType="2" type="stem">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="1" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="2" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.10000000000000001" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="bud_branch" subType="4" type="stem">
<parameter dev="0" name="lb" value="1" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="3" name="ln" value="2" />
<parameter dev="0" name="lmax" value="70" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.1" />
<parameter dev="0.03" name="a" value="0.1" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="8" />
<parameter name="tropismS" value="0.05" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="2" />
</organ>
<organ name="midrib" subType="2" type="leaf">
<parameter dev="0" name="lb" value="0.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="3" name="ln" value="0.1" />
<parameter dev="0" name="lmax" value="3" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.1" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0.0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="1.5" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="veins" subType="4" type="leaf">
<parameter dev="0" name="lb" value="1.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="5" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.05" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="1.5" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
</Plant>
\ No newline at end of file
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree20_new.xml 0 → 100644
View file @ fcdabcab
<?xml version="1.0" encoding="UTF-8"?>
<Plant name="CPlantBox_test_leaf_tree20_new" filetype="parameters">
<organ type="seed" name="true" subType="0">
<parameter name="seedPos.x" value="80"/>
<parameter name="seedPos.y" value="0"/>
<parameter name="seedPos.z" value="-3"/>
<parameter name="plantingdepth" value="3"/>
<parameter name="firstB" value="0" dev="0"/>
<parameter name="delayB" value="0" dev="0"/>
<parameter name="maxB" value="7" dev="0"/>
<parameter name="maxTi" value="0" dev="0"/>
<parameter name="nC" value="2"/>
<parameter name="nz" value="0"/>
<parameter name="firstSB" value="14" dev="0"/>
<parameter name="delaySB" value="0" dev="0"/>
<parameter name="delayRC" value="7" dev="0"/>
<parameter name="simulationTime" value="56" dev="0"/>
</organ>
<organ type="root" name="taproot" subType="1">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="299" dev="0"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="lateral1" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1.76" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1.76" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.34999999999999998" dev="0.035000000000000003"/>
<parameter name="a" value="0.012500000000000001" dev="0.00125"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="lateral2" subType="3">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="6.0099999999999998" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="6.0099999999999998" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.40000000000000002" dev="0.040000000000000001"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="nodal_root" subType="4">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="0.10000000000000001"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="15.9"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="150" dev="1"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.80000000000000004" dev="0.15708"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="shoot_borne_root" subType="5">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="59.049999999999997" dev="5.9000000000000004"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="99.099999999999994" dev="11.798038000000002"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.1140399999999999" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="stem" name="mainstem" subType="1">
<parameter name="lb" value="30" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="2" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="1.0000000000000001e-05" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="120" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="89" dev="0"/>
<parameter name="r" value="2" dev="0.45000000000000001"/>
<parameter name="a" value="0.59999999999999998" dev="0.20000000000000001"/>
<parameter name="RotBeta" value="0.20000000000000001"/>
<parameter name="BetaDev" value="0.10000000000000001"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="0"/>
<parameter name="tropismN" value="0"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="3" percentage="1"/>
</organ>
<organ type="stem" name="1stbranch" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="2" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="stem" name="2ndbranch" subType="3">
<parameter name="lb" value="5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="8"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="33" dev="4"/>
<parameter name="r" value="1" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0.40000000000000002"/>
<parameter name="BetaDev" value="0.29999999999999999"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="4"/>
<parameter name="tropismS" value="0.01"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="stem" name="otherbranch1" subType="4">
<parameter name="lb" value="1" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="35.5" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0.035000000000000003"/>
<parameter name="a" value="0.10000000000000001" dev="0.029999999999999999"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="8"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="1"/>
</organ>
<organ type="leaf" name="lateral1" subType="2">
<parameter name="lb" value="0.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.10000000000000001" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="3" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="23.999999999999996" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="leaf" name="nodal_root" subType="4">
<parameter name="lb" value="1.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="5"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.050000000000000003" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="1.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
</Plant>
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree21.xml 0 → 100644
View file @ fcdabcab
<Plant filetype="parameters" name="maize">
<organ subType="0" type="seed">
<parameter name="seedPos.x" value="80" />
<parameter name="seedPos.y" value="40" />
<parameter name="seedPos.z" value="-3" />
<parameter name="plantingdepth" value="3" />
<parameter dev="0" name="firstB" value="0" />
<parameter dev="0" name="delayB" value="0" />
<parameter dev="0" name="maxB" value="7" />
<parameter name="nC" value="2" />
<parameter name="nz" value="0" />
<parameter dev="0" name="firstSB" value="14" />
<parameter dev="0" name="delaySB" value="0" />
<parameter dev="0" name="delayRC" value="7" />
<parameter dev="0" name="simulationTime" value="56" />
</organ>
<organ name="taproot" subType="1" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="0" name="lmax" value="159" />
<parameter dev="31.794039999999999" name="nob" value="299" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.1" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="lateral1" subType="2" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="1.76" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1.76" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.34999999999999998" />
<parameter dev="0.00125" name="a" value="0.012500000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="lateral2" subType="3" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="6.0099999999999998" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="6.0099999999999998" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.040000000000000001" name="r" value="0.40000000000000002" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="nodal_root" subType="4" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="0.10000000000000001" name="ln" value="1" />
<parameter dev="15.9" name="lmax" value="159" />
<parameter dev="1" name="nob" value="150" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.15708" name="theta" value="0.80000000000000004" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="shoot_borne_root" subType="5" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="5.9000000000000004" name="lmax" value="59.049999999999997" />
<parameter dev="11.798038000000002" name="nob" value="99.099999999999994" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1.1140399999999999" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="mainstem" subType="1" type="stem">
<parameter dev="0" name="lb" value="30" />
<parameter dev="0" name="la" value="2" />
<parameter dev="1.0000000000000001e-05" functiontype="1" name="ln" value="1" />
<parameter dev="0" name="lmax" value="120" />
<parameter dev="0" name="nob" value="10" />
<parameter dev="0.45000000000000001" name="r" value="2" />
<parameter dev="0.2" name="a" value="0.6" />
<parameter name="RotBeta" value="0.2" />
<parameter name="BetaDev" value="0.1" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="0" />
<parameter name="tropismN" value="0" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="3" />
</organ>
<organ name="1stbranch" subType="3" type="stem">
<parameter dev="0" name="lb" value="5" />
<parameter dev="0" name="la" value="1" />
<parameter dev="0" functiontype="1" name="ln" value="2" />
<parameter dev="8" name="lmax" value="70" />
<parameter dev="2.6666666666666665" name="nob" value="5" />
<parameter dev="0.035000000000000003" name="r" value="1" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0.4" />
<parameter name="BetaDev" value="0.3" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="4" />
<parameter name="tropismS" value="0.01" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="bud" subType="2" type="stem">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="1" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="2" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.10000000000000001" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="bud_branch" subType="4" type="stem">
<parameter dev="0" name="lb" value="1" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="3" name="ln" value="2" />
<parameter dev="0" name="lmax" value="70" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.1" />
<parameter dev="0.03" name="a" value="0.1" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="8" />
<parameter name="tropismS" value="0.05" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="2" />
</organ>
<organ name="midrib" subType="2" type="leaf">
<parameter dev="0" name="lb" value="0.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="3" name="ln" value="0.1" />
<parameter dev="0" name="lmax" value="3" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.1" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0.0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="1.5" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="veins" subType="4" type="leaf">
<parameter dev="0" name="lb" value="1.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="5" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.05" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="1.5" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
</Plant>
\ No newline at end of file
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree21_new.xml 0 → 100644
View file @ fcdabcab
<?xml version="1.0" encoding="UTF-8"?>
<Plant name="CPlantBox_test_leaf_tree21_new" filetype="parameters">
<organ type="seed" name="true" subType="0">
<parameter name="seedPos.x" value="80"/>
<parameter name="seedPos.y" value="40"/>
<parameter name="seedPos.z" value="-3"/>
<parameter name="plantingdepth" value="3"/>
<parameter name="firstB" value="0" dev="0"/>
<parameter name="delayB" value="0" dev="0"/>
<parameter name="maxB" value="7" dev="0"/>
<parameter name="maxTi" value="0" dev="0"/>
<parameter name="nC" value="2"/>
<parameter name="nz" value="0"/>
<parameter name="firstSB" value="14" dev="0"/>
<parameter name="delaySB" value="0" dev="0"/>
<parameter name="delayRC" value="7" dev="0"/>
<parameter name="simulationTime" value="56" dev="0"/>
</organ>
<organ type="root" name="taproot" subType="1">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="299" dev="0"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="lateral1" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1.76" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1.76" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.34999999999999998" dev="0.035000000000000003"/>
<parameter name="a" value="0.012500000000000001" dev="0.00125"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="lateral2" subType="3">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="6.0099999999999998" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="6.0099999999999998" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.40000000000000002" dev="0.040000000000000001"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="nodal_root" subType="4">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="0.10000000000000001"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="15.9"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="150" dev="1"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.80000000000000004" dev="0.15708"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="shoot_borne_root" subType="5">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="59.049999999999997" dev="5.9000000000000004"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="99.099999999999994" dev="11.798038000000002"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.1140399999999999" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="stem" name="mainstem" subType="1">
<parameter name="lb" value="30" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="2" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="1.0000000000000001e-05" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="120" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="89" dev="0"/>
<parameter name="r" value="2" dev="0.45000000000000001"/>
<parameter name="a" value="0.59999999999999998" dev="0.20000000000000001"/>
<parameter name="RotBeta" value="0.20000000000000001"/>
<parameter name="BetaDev" value="0.10000000000000001"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="0"/>
<parameter name="tropismN" value="0"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="3" percentage="1"/>
</organ>
<organ type="stem" name="1stbranch" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="2" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="stem" name="2ndbranch" subType="3">
<parameter name="lb" value="5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="8"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="33" dev="4"/>
<parameter name="r" value="1" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0.40000000000000002"/>
<parameter name="BetaDev" value="0.29999999999999999"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="4"/>
<parameter name="tropismS" value="0.01"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="stem" name="otherbranch1" subType="4">
<parameter name="lb" value="1" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="35.5" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0.035000000000000003"/>
<parameter name="a" value="0.10000000000000001" dev="0.029999999999999999"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="8"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="1"/>
</organ>
<organ type="leaf" name="lateral1" subType="2">
<parameter name="lb" value="0.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.10000000000000001" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="3" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="23.999999999999996" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="leaf" name="nodal_root" subType="4">
<parameter name="lb" value="1.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="5"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.050000000000000003" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="1.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
</Plant>
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree22.xml 0 → 100644
View file @ fcdabcab
<Plant filetype="parameters" name="maize">
<organ subType="0" type="seed">
<parameter name="seedPos.x" value="80" />
<parameter name="seedPos.y" value="80" />
<parameter name="seedPos.z" value="-3" />
<parameter name="plantingdepth" value="3" />
<parameter dev="0" name="firstB" value="0" />
<parameter dev="0" name="delayB" value="0" />
<parameter dev="0" name="maxB" value="7" />
<parameter name="nC" value="2" />
<parameter name="nz" value="0" />
<parameter dev="0" name="firstSB" value="14" />
<parameter dev="0" name="delaySB" value="0" />
<parameter dev="0" name="delayRC" value="7" />
<parameter dev="0" name="simulationTime" value="56" />
</organ>
<organ name="taproot" subType="1" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="0" name="lmax" value="159" />
<parameter dev="31.794039999999999" name="nob" value="299" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.1" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="lateral1" subType="2" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="1.76" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1.76" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.34999999999999998" />
<parameter dev="0.00125" name="a" value="0.012500000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="lateral2" subType="3" type="root">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="6.0099999999999998" />
<parameter dev="0" name="ln" value="0" />
<parameter dev="0" name="lmax" value="6.0099999999999998" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.040000000000000001" name="r" value="0.40000000000000002" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="2" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.52359900000000004" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="1.22173" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="nodal_root" subType="4" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="0.10000000000000001" name="ln" value="1" />
<parameter dev="15.9" name="lmax" value="159" />
<parameter dev="1" name="nob" value="150" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.15708" name="theta" value="0.80000000000000004" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="shoot_borne_root" subType="5" type="root">
<parameter dev="0" name="lb" value="2" />
<parameter dev="0" name="la" value="8" />
<parameter dev="1.0000000000000001e-05" name="ln" value="0.5" />
<parameter dev="5.9000000000000004" name="lmax" value="59.049999999999997" />
<parameter dev="11.798038000000002" name="nob" value="99.099999999999994" />
<parameter dev="0.45000000000000001" name="r" value="4.5" />
<parameter dev="0.02" name="a" value="0.20000000000000001" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="1" />
<parameter name="tropismS" value="0.050000000000000003" />
<parameter name="dx" value="0.25" />
<parameter dev="0.109956" name="theta" value="1.1140399999999999" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="0.5" type="2" />
<parameter name="successor" number="1" percentage="0.5" type="3" />
</organ>
<organ name="mainstem" subType="1" type="stem">
<parameter dev="0" name="lb" value="30" />
<parameter dev="0" name="la" value="2" />
<parameter dev="1.0000000000000001e-05" functiontype="1" name="ln" value="1" />
<parameter dev="0" name="lmax" value="120" />
<parameter dev="0" name="nob" value="10" />
<parameter dev="0.45000000000000001" name="r" value="2" />
<parameter dev="0.2" name="a" value="0.6" />
<parameter name="RotBeta" value="0.2" />
<parameter name="BetaDev" value="0.1" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="0" />
<parameter name="tropismN" value="0" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="3" />
</organ>
<organ name="1stbranch" subType="3" type="stem">
<parameter dev="0" name="lb" value="5" />
<parameter dev="0" name="la" value="1" />
<parameter dev="0" functiontype="1" name="ln" value="2" />
<parameter dev="8" name="lmax" value="70" />
<parameter dev="2.6666666666666665" name="nob" value="5" />
<parameter dev="0.035000000000000003" name="r" value="1" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0.4" />
<parameter name="BetaDev" value="0.3" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="4" />
<parameter name="tropismS" value="0.01" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="bud" subType="2" type="stem">
<parameter dev="0" name="lb" value="0" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="1" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="2" />
<parameter dev="0.1" name="a" value="0.29999999999999999" />
<parameter name="RotBeta" value="0" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0.10000000000000001" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
<organ name="bud_branch" subType="4" type="stem">
<parameter dev="0" name="lb" value="1" />
<parameter dev="0" name="la" value="0" />
<parameter dev="0" functiontype="3" name="ln" value="2" />
<parameter dev="0" name="lmax" value="70" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0.035000000000000003" name="r" value="0.1" />
<parameter dev="0.03" name="a" value="0.1" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="4" />
<parameter name="tropismN" value="8" />
<parameter name="tropismS" value="0.05" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.3" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="2" />
</organ>
<organ name="midrib" subType="2" type="leaf">
<parameter dev="0" name="lb" value="0.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="3" name="ln" value="0.1" />
<parameter dev="0" name="lmax" value="3" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.1" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0.0" />
<parameter name="InitBeta" value="0.5" />
<parameter name="tropismT" value="1.5" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
<parameter name="successor" number="0" percentage="1" type="4" />
</organ>
<organ name="veins" subType="4" type="leaf">
<parameter dev="0" name="lb" value="1.5" />
<parameter dev="0" name="la" value="0.2" />
<parameter dev="0" functiontype="5" name="ln" value="0" />
<parameter dev="0" name="lmax" value="1" />
<parameter dev="0" name="nob" value="0" />
<parameter dev="0" name="r" value="0.05" />
<parameter dev="0.002" name="a" value="0.02" />
<parameter name="RotBeta" value="1" />
<parameter name="BetaDev" value="0" />
<parameter name="InitBeta" value="1.5" />
<parameter name="tropismT" value="1" />
<parameter name="tropismN" value="2" />
<parameter name="tropismS" value="0" />
<parameter name="dx" value="0.25" />
<parameter dev="0" name="theta" value="0.4" />
<parameter dev="0" name="rlt" value="1000000000" />
<parameter name="gf" value="1" />
</organ>
</Plant>
\ No newline at end of file
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree22_new.xml 0 → 100644
View file @ fcdabcab
<?xml version="1.0" encoding="UTF-8"?>
<Plant name="CPlantBox_test_leaf_tree22_new" filetype="parameters">
<organ type="seed" name="true" subType="0">
<parameter name="seedPos.x" value="80"/>
<parameter name="seedPos.y" value="80"/>
<parameter name="seedPos.z" value="-3"/>
<parameter name="plantingdepth" value="3"/>
<parameter name="firstB" value="0" dev="0"/>
<parameter name="delayB" value="0" dev="0"/>
<parameter name="maxB" value="7" dev="0"/>
<parameter name="maxTi" value="0" dev="0"/>
<parameter name="nC" value="2"/>
<parameter name="nz" value="0"/>
<parameter name="firstSB" value="14" dev="0"/>
<parameter name="delaySB" value="0" dev="0"/>
<parameter name="delayRC" value="7" dev="0"/>
<parameter name="simulationTime" value="56" dev="0"/>
</organ>
<organ type="root" name="taproot" subType="1">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="299" dev="0"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="lateral1" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1.76" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1.76" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.34999999999999998" dev="0.035000000000000003"/>
<parameter name="a" value="0.012500000000000001" dev="0.00125"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="lateral2" subType="3">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="6.0099999999999998" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="6.0099999999999998" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.40000000000000002" dev="0.040000000000000001"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="2"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.52359900000000004"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.22173" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="root" name="nodal_root" subType="4">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="0.10000000000000001"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="159" dev="15.9"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="150" dev="1"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.80000000000000004" dev="0.15708"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="root" name="shoot_borne_root" subType="5">
<parameter name="lb" value="2" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="8" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.5" dev="1.0000000000000001e-05"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="59.049999999999997" dev="5.9000000000000004"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="99.099999999999994" dev="11.798038000000002"/>
<parameter name="r" value="4.5" dev="0.45000000000000001"/>
<parameter name="a" value="0.20000000000000001" dev="0.02"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="1"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="1.1140399999999999" dev="0.109956"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="0.5"/>
<parameter name="successor" number="1" type="3" percentage="0.5"/>
</organ>
<organ type="stem" name="mainstem" subType="1">
<parameter name="lb" value="30" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="2" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="1" dev="1.0000000000000001e-05" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="120" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="89" dev="0"/>
<parameter name="r" value="2" dev="0.45000000000000001"/>
<parameter name="a" value="0.59999999999999998" dev="0.20000000000000001"/>
<parameter name="RotBeta" value="0.20000000000000001"/>
<parameter name="BetaDev" value="0.10000000000000001"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="0"/>
<parameter name="tropismN" value="0"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="3" percentage="1"/>
</organ>
<organ type="stem" name="1stbranch" subType="2">
<parameter name="lb" value="0" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="2" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0.10000000000000001"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
<organ type="stem" name="2ndbranch" subType="3">
<parameter name="lb" value="5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="1" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="1"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="8"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="33" dev="4"/>
<parameter name="r" value="1" dev="0.035000000000000003"/>
<parameter name="a" value="0.29999999999999999" dev="0.10000000000000001"/>
<parameter name="RotBeta" value="0.40000000000000002"/>
<parameter name="BetaDev" value="0.29999999999999999"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="4"/>
<parameter name="tropismS" value="0.01"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="stem" name="otherbranch1" subType="4">
<parameter name="lb" value="1" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="2" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="70" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="35.5" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0.035000000000000003"/>
<parameter name="a" value="0.10000000000000001" dev="0.029999999999999999"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="4"/>
<parameter name="tropismN" value="8"/>
<parameter name="tropismS" value="0.050000000000000003"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.29999999999999999" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="2" percentage="1"/>
</organ>
<organ type="leaf" name="lateral1" subType="2">
<parameter name="lb" value="0.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0.10000000000000001" dev="0" functiontype="3"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="3" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="23.999999999999996" dev="0"/>
<parameter name="r" value="0.10000000000000001" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="0.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
<parameter name="successor" number="0" type="4" percentage="1"/>
</organ>
<organ type="leaf" name="nodal_root" subType="4">
<parameter name="lb" value="1.5" dev="0"/>
<!--Basal zone [cm]-->
<parameter name="la" value="0.20000000000000001" dev="0"/>
<!--Apical zone [cm];-->
<parameter name="ln" value="0" dev="0" functiontype="5"/>
<!--Inter-lateral distance [cm];-->
<parameter name="lmax" value="1" dev="0"/>
<!--Inter-lateral distance [cm];-->
<parameter name="nob" value="0" dev="0"/>
<parameter name="r" value="0.050000000000000003" dev="0"/>
<parameter name="a" value="0.02" dev="0.002"/>
<parameter name="RotBeta" value="1"/>
<parameter name="BetaDev" value="0"/>
<parameter name="InitBeta" value="1.5"/>
<parameter name="tropismT" value="1"/>
<parameter name="tropismN" value="2"/>
<parameter name="tropismS" value="0"/>
<parameter name="dx" value="0.25"/>
<parameter name="theta" value="0.40000000000000002" dev="0"/>
<parameter name="rlt" value="1000000000" dev="0"/>
<parameter name="gf" value="1"/>
</organ>
</Plant>
assays/Assay1/dataset/CPlantBox-isp/modelparameter/CPlantBox_test_leaf_tree_new.xml 0 → 100644
View file @ fcdabcab
<?xml version="1.0" encoding="UTF-8"?>
<Plant name="CPlantBox_test_leaf_tree_new" filetype="parameters">
</Plant>