Skip to content
Snippets Groups Projects
Angela Kranz's avatar
Angela Kranz authored
8be45f21
History
Name Last commit Last update
..
protocols
resources
README.md
isa.study.xlsx

Drought stress experiment

A greenhouse experiment was performed to investigate the influence of drought stress on the gene expression and primary metabolism of R. nigrum cv Rosenthals Langtraubige. Stressed plants (A-C) that were not watered for 4 days were compared to control plants (D-F) with continuous irrigation. Both leaves and roots were sampled for RNA and metabolite extraction.

Study metadata

Input [Source Name] Characteristic [organism] Characteristic [plant structure development stage] Characteristic [geographic area] Parameter [isolation and growth condition] Parameter [Container volume] Parameter [plant growth medium exposure] Factor [watering exposure] Factor [Experiment End Date] Characteristic [plant structure] Output [Sample Name]
R. nigrum cv Rosenthals Langtraubige_R1 Ribes nigrum adult Germany drought stress 3 liter soil water content exposure 0 Milliliter 4 Day root R. nigrum cv Rosenthals Langtraubige_roots_R1
R. nigrum cv Rosenthals Langtraubige_R2 Ribes nigrum adult Germany drought stress 3 liter soil water content exposure 0 Milliliter 4 Day root R. nigrum cv Rosenthals Langtraubige_roots_R2
R. nigrum cv Rosenthals Langtraubige_R3 Ribes nigrum adult Germany drought stress 3 liter soil water content exposure 0 Milliliter 4 Day root R. nigrum cv Rosenthals Langtraubige_roots_R3
R. nigrum cv Rosenthals Langtraubige_L1 Ribes nigrum adult Germany drought stress 3 liter soil water content exposure 0 Milliliter 4 Day leaf R. nigrum cv Rosenthals Langtraubige_leaves_L1
R. nigrum cv Rosenthals Langtraubige_L2 Ribes nigrum adult Germany drought stress 3 liter soil water content exposure 0 Milliliter 4 Day leaf R. nigrum cv Rosenthals Langtraubige_leaves_L2
R. nigrum cv Rosenthals Langtraubige_L3 Ribes nigrum adult Germany drought stress 3 liter soil water content exposure 0 Milliliter 4 Day leaf R. nigrum cv Rosenthals Langtraubige_leaves_L3
R. nigrum cv Rosenthals Langtraubige_RC1 Ribes nigrum adult Germany control exposure 3 liter soil water content exposure 150 Milliliter 4 Day root R. nigrum cv Rosenthals Langtraubige_roots_RC1
R. nigrum cv Rosenthals Langtraubige_RC2 Ribes nigrum adult Germany control exposure 3 liter soil water content exposure 150 Milliliter 4 Day root R. nigrum cv Rosenthals Langtraubige_roots_RC2
R. nigrum cv Rosenthals Langtraubige_RC3 Ribes nigrum adult Germany control exposure 3 liter soil water content exposure 150 Milliliter 4 Day root R. nigrum cv Rosenthals Langtraubige_roots_RC3
R. nigrum cv Rosenthals Langtraubige_LC1 Ribes nigrum adult Germany control exposure 3 liter soil water content exposure 150 Milliliter 4 Day leaf R. nigrum cv Rosenthals Langtraubige_leaves_LC1
R. nigrum cv Rosenthals Langtraubige_LC2 Ribes nigrum adult Germany control exposure 3 liter soil water content exposure 150 Milliliter 4 Day leaf R. nigrum cv Rosenthals Langtraubige_leaves_LC2
R. nigrum cv Rosenthals Langtraubige_LC3 Ribes nigrum adult Germany control exposure 3 liter soil water content exposure 150 Milliliter 4 Day leaf R. nigrum cv Rosenthals Langtraubige_leaves_LC3

Experimental set-up

Figure from Ziegler et al. 2024