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Sabrina Zander authoredSabrina Zander authored
ARCs
For an introduction to the ARC concept, see https://nfdi4plants.github.io/nfdi4plants.knowledgebase/core-concepts/arc/.
For a quick start guide click here.
ARC directory structure
/isa.investigation.xlsx
- Main investigation file (XLSX format), containing administrative information about the investigation.
/LICENSE
- License file for the ARC (by default it is CC-BY-4.0 )
Studies
All input material or (external) data resources are described in studies.
/studies/<yourStudyName>
- Folder for a specific study
/studies/<yourStudyName>/resources
- Study resources
/studies/<yourStudyName>/protocols
- Study protocol as text (e.g growth protocol)
/studies/<yourStudyName>/isa.study.xlsx
- Detailed metadata annotation of the study
Assays
All measurements are considered as assays.
/assays/<yourAssayName>
- Folder for a specific assay
/assays/<yourAssayName>/dataset
- Assay dataset
/assays/<yourAssayName>/protocols
- Assay protocol as text (e.g SOP)
/assays/<yourAssayName>/isa.assay.xlsx
- Detailed metadata annotation of the assay
Workflows
All programmatic components of an ARC, including code and enviroment specifications.
/workflows/<yourWorkflowName>/
- Folder containing code, enviromental specifications, and any required packages or dependencies.
/workflows/<yourWorkflowName>.cwl
- Script or workflow description (in CWL format) that executes a process and priduces run results.
Runs
Runs contain all results produced by workflow executions.
/runs/<yourRunResultName>
- Folder containing the output of a run ( i.e., a workflow execution).