run.cwl

#!/usr/bin/env cwl-runner
cwlVersion: v1.2.0-dev1
class: Workflow
inputs:
  in_sleuth:
    type: File
  out_folder:
    type: string
outputs:
  out_dir:
    type:
      type: array
      items: Directory
    outputSource: kallisto_sleuth/outdir
steps:
  kallisto_sleuth:
    run: ../../workflows/kallisto_sleuth/workflow.cwl
    in:
      in_sleuth: in_sleuth
      out_folder: out_folder
    out: [outdir]