test runs other machine

runs/kallisto_sleuth/README.md

@@ -3,7 +3,7 @@
 
 ## First cd into the (runs) folder, with the .yml file
 
-cd /Users/dominikbrilhaus/03_DataPLANT_gitlab/samplearc_rnaseq/runs/kallisto_sleuth
+cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq/runs/kallisto_sleuth
 
 ## Let it flow
 

runs/kallisto_sleuth/kallisto_sleuth.yml

@@ -4,4 +4,4 @@ r_script:
   path: ../../workflows/kallisto_sleuth.R
 in_sleuth: runs/kallisto_collect/kallisto_sleuthObject.RData
 out_folder: runs/kallisto_sleuth
-arc_root: /Users/dominikbrilhaus/03_DataPLANT_gitlab/samplearc_rnaseq
\ No newline at end of file
+arc_root: /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq
\ No newline at end of file

runs/merged_isa_metadata/README.md

@@ -3,7 +3,7 @@
 
 ## First cd into the (runs) folder, with the .yml file
 
-cd /Users/dominikbrilhaus/03_DataPLANT_gitlab/samplearc_rnaseq/runs/merged_isa_metadata
+cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq/runs/merged_isa_metadata
 
 
 ## Let it flow

runs/merged_isa_metadata/merge_isa_metadata.yml

@@ -5,4 +5,4 @@ r_script:
 in_isa_study: studies/TalinumFacultativeCAM/isa.study.xlsx:plant_growth
 in_isa_assay: assays/Talinum_RNASeq_minimal/isa.assay.xlsx:2EXT01_RNA:3ASY01_RNASeq
 out_folder: runs/merged_isa_metadata
-arc_root: /Users/dominikbrilhaus/03_DataPLANT_gitlab/samplearc_rnaseq
\ No newline at end of file
+arc_root: /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq
\ No newline at end of file