rm cwl-dev

6f731323 · Dominik Brilhaus · 4c88a8d4 · 6f731323 · 6f731323 · 6f731323
Commit 6f731323 authored 2 years ago by Dominik Brilhaus
--- a/runs/kallisto_collect/README.md
+++ b/runs/kallisto_collect/README.md
@@ -9,5 +9,5 @@ cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq_adrian/runs/kallisto
 ```bash
 ### run with cwltool
-cwltool --enable-dev run.cwl kallisto_collect.yml
+cwltool run.cwl kallisto_collect.yml
 ```
--- a/runs/kallisto_collect/run.cwl
+++ b/runs/kallisto_collect/run.cwl
 #!/usr/bin/env cwl-runner
-cwlVersion: v1.2.0-dev1
+cwlVersion: v1.2
 class: Workflow
 inputs:
  in_kallisto_results:

--- a/runs/kallisto_index/README.md
+++ b/runs/kallisto_index/README.md
@@ -9,5 +9,5 @@ cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq_adrian/runs/kallisto
 ```bash
 ### run with cwltool
-cwltool --enable-dev run.cwl kallisto_index.yml
+cwltool run.cwl kallisto_index.yml
 ```
--- a/runs/kallisto_index/run.cwl
+++ b/runs/kallisto_index/run.cwl
 #!/usr/bin/env cwl-runner
-cwlVersion: v1.2.0-dev1
+cwlVersion: v1.2
 class: Workflow
 inputs:
  in_genome_ref:

--- a/runs/kallisto_quant/README.md
+++ b/runs/kallisto_quant/README.md
@@ -9,5 +9,5 @@ cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq_adrian/runs/kallisto
 ```bash
 ### run with cwltool
-cwltool --enable-dev run.cwl kallisto_quant.yml
+cwltool run.cwl kallisto_quant.yml
 ```
--- a/runs/kallisto_quant/run.cwl
+++ b/runs/kallisto_quant/run.cwl
 #!/usr/bin/env cwl-runner
-cwlVersion: v1.2.0-dev1
+cwlVersion: v1.2
 class: Workflow
 inputs:
  out_folder:

--- a/runs/kallisto_sleuth/README.md
+++ b/runs/kallisto_sleuth/README.md
@@ -9,5 +9,5 @@ cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq_adrian/runs/kallisto
 ```bash
 ### run with cwltool
-cwltool --enable-dev run.cwl kallisto_sleuth.yml
+cwltool run.cwl kallisto_sleuth.yml
 ```
--- a/runs/kallisto_sleuth/run.cwl
+++ b/runs/kallisto_sleuth/run.cwl
 #!/usr/bin/env cwl-runner
-cwlVersion: v1.2.0-dev1
+cwlVersion: v1.2
 class: Workflow
 inputs:
  in_sleuth:

--- a/runs/shiny_prep/README.md
+++ b/runs/shiny_prep/README.md
@@ -9,5 +9,5 @@ cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq_adrian/runs/kallisto
 ```bash
 ### run with cwltool
-cwltool --enable-dev run.cwl shiny_prep.yml
+cwltool run.cwl shiny_prep.yml
 ```
--- a/runs/shiny_prep/run.cwl
+++ b/runs/shiny_prep/run.cwl
 #!/usr/bin/env cwl-runner
-cwlVersion: v1.2.0-dev1
+cwlVersion: v1.2
 class: Workflow
 inputs:
  out_folder:

--- a/workflows/kallisto_collect/workflow.cwl
+++ b/workflows/kallisto_collect/workflow.cwl
 #!/usr/bin/env cwl-runner
-cwlVersion: v1.2.0-dev1
+cwlVersion: v1.2
 class: CommandLineTool
 hints:
  DockerRequirement:

--- a/workflows/kallisto_index/workflow.cwl
+++ b/workflows/kallisto_index/workflow.cwl
 #!/usr/bin/env cwl-runner
-cwlVersion: v1.2.0-dev1
+cwlVersion: v1.2
 class: CommandLineTool
 hints:
  DockerRequirement:

--- a/workflows/kallisto_quant/workflow.cwl
+++ b/workflows/kallisto_quant/workflow.cwl
 #!/usr/bin/env cwl-runner
-cwlVersion: v1.2.0-dev1
+cwlVersion: v1.2
 class: CommandLineTool
 hints:
  DockerRequirement:

--- a/workflows/kallisto_sleuth/workflow.cwl
+++ b/workflows/kallisto_sleuth/workflow.cwl
 #!/usr/bin/env cwl-runner
-cwlVersion: v1.2.0-dev1
+cwlVersion: v1.2
 class: CommandLineTool
 hints:
  DockerRequirement:

--- a/workflows/shiny_prep/workflow.cwl
+++ b/workflows/shiny_prep/workflow.cwl
 #!/usr/bin/env cwl-runner
-cwlVersion: v1.2.0-dev1
+cwlVersion: v1.2
 class: CommandLineTool
 hints:
  DockerRequirement: