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Commit 73782263 authored by Dominik Brilhaus's avatar Dominik Brilhaus
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add overview figure

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1 merge request!19Arc cwl
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Stage: arc_json
    Stage: quality_report_generator
      Stage: quality_report
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        .cwl/README.md
        + 1
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        View file @ 73782263
        ......@@ -77,5 +77,5 @@ cwltool --parallel run.cwl run.yml > $(date +"%Y-%m-%d_%H-%M")-run.log 2>&1 &
        ### Print workflow to file
        ```bash
        cwltool --print-dot run.cwl | dot -Tsvg > run.svg
        cwltool --print-dot ../arc.cwl | dot -Tsvg > arc-cwl.svg
        ```
        .cwl/arc-cwl.svg 0 → 100644
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        View file @ 73782263
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        README.md
        + 29
        − 10
        View file @ 73782263
        ......@@ -5,15 +5,29 @@ The [Talinum Genome Draft](./studies/TalinumGenomeDraft) originates from <https:
        ## Table of Contents
        1. [Description](#description)
        2. [Publication](#publication)
        3. Studies
        - [TalinumGenomeDraft](#study--talinumgenomedraft)
        - [TalinumSamples-STRI](#study--TalinumSamples-STRI)
        4. Assays
        - [MassHunter_targets](#assay--masshunter_targets)
        - [GCqTOF_targets](#assay--gcqtof_targets)
        - [RNASeq](#assay--RNASeq)
        - [Table of Contents](#table-of-contents)
        - [Description](#description)
        - [Relationships between Assays and Studies](#relationships-between-assays-and-studies)
        - [Workflow Overview](#workflow-overview)
        - [Additional details](#additional-details)
        - [Publication](#publication)
        - [Study : *TalinumGenomeDraft*](#study--talinumgenomedraft)
        - [Additional details](#additional-details-1)
        - [Annotation headers](#annotation-headers)
        - [Study : *TalinumSamples-STRI*](#study--talinumsamples-stri)
        - [Additional details](#additional-details-2)
        - [Annotation headers](#annotation-headers-1)
        - [Assay : *MassHunter\_targets*](#assay--masshunter_targets)
        - [Additional details](#additional-details-3)
        - [Annotation headers](#annotation-headers-2)
        - [Assay : *RNASeq*](#assay--rnaseq)
        - [Additional details](#additional-details-4)
        - [Annotation headers](#annotation-headers-3)
        - [Assay : *GCqTOF\_targets*](#assay--gcqtof_targets)
        - [Additional details](#additional-details-5)
        - [Annotation headers](#annotation-headers-4)
        ### Description
        ......@@ -67,7 +81,12 @@ class ASSAY_MassHunter_targets,ASSAY_RNASeq,ASSAY_GCqTOF_targets assayStyle;
        class TalinumGenomeDraft,plant_material,mh-quant-results,mh-quant-report,rna_extraction,illumina,metabolite_extraction,gas_chromatography,mass_spec processStyle;
        ```
        ### Additional details
        ## Workflow Overview
        ![arc.cwl](.cwl/arc-cwl.svg)
        ## Additional details
        | Meta Data | Description |
        | --------- | ----------- |
        ......
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