runs/kallisto_collect/README.md

runs/kallisto_collect/kallisto_collect.yml

runs/kallisto_index/README.md

runs/kallisto_index/kallisto_index.yml

runs/kallisto_quant/README.md

runs/kallisto_quant/kallisto_quant.yml

runs/shiny_prep/README.md

runs/shiny_prep/shiny_prep.yml

workflows/kallisto_collect.R

workflows/kallisto_index.sh

workflows/kallisto_quant.sh

workflows/kallisto_sleuth.R

workflows/merge_isa_metadata.R

workflows/shiny_prep.R