one arc a day keeps the data steward happ(a)y

README.md

@@ -48,6 +48,7 @@ Directory | Purpose
 
 ## Bumping to ARC v1.1 (23.03.2022)
 
+### by arcCommander / shell
 > depends on arcCommander v3 or higher
 
 ```bash
@@ -61,4 +62,33 @@ arc study add -s TalinumGenomeDraft # add draft genome as study
 mv externals/Talinum.gm.CDS.nt.fa studies/TalinumGenomeDraft/resources # mv genome to resources
 rm -r externals
 rm inv.json
+
+arc assay register -s TalinumFacultativeCAM -a Talinum_RNASeq_minimal # re-register assay 
+arc update
+
+mv assays/Talinum_RNASeq_minimal/protocols/01_plant_material.md studies/TalinumFacultativeCAM/protocols # move plant growth from assay to study
+
+arc assay remove -s TalinumFacultativeCAM -a RNASeq_Kallisto_quant # add computational parts as assay 
+
+```
+
+> note: soft assay 
+
+### by hand
+- move plant growth sheet isa.assay to isa.study
+- remove computational RNASeq sheet from assays as it partly duplicates the (not yet CWLed) kallisto workflow
+
+### add placeholder sample descriptors
+
+```bash
+arc_root=$(pwd)
+cd studies/TalinumFacultativeCAM/resources/
+touch \
+DB_097 \
+DB_099 \
+DB_103 \
+DB_161 \
+DB_163 \
+DB_165
+cd $arc_root
 ```
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