Commits · 00fa74c216e589dae0998b6beb58a356f0991da0 · Dominik Brilhaus / Facultative CAM in Talinum

Mar 19, 2025
- improve logic to gather output directories from kallisto scatter step · 00fa74c2
  Dominik Brilhaus authored 3 weeks ago
  
  00fa74c2
Mar 18, 2025
- move deseq readme to cwl docs section · 1a41155e
  Dominik Brilhaus authored 4 weeks ago
  
  1a41155e
- rm dockerfile sleuth · bd465bfd
  Dominik Brilhaus authored 4 weeks ago
  
  bd465bfd
- try fix docker for shiny · ec55b2eb
  Dominik Brilhaus authored 4 weeks ago
  
  ec55b2eb
- rename assay rnaseq · 12952600
  Dominik Brilhaus authored 4 weeks ago
  
  12952600
- add cwl docs · d154be9e
  Dominik Brilhaus authored 4 weeks ago
  
  d154be9e
- switch kallisto input to array of records · 943e5e52
  Dominik Brilhaus authored 4 weeks ago
  
  943e5e52
- replace sampleRecord logic in kallisto · c67b71f2
  Dominik Brilhaus authored 4 weeks ago
  
  c67b71f2
- add and run fastqc workflow · 43934494
  Dominik Brilhaus authored 4 weeks ago
  
  43934494
- remove deprecated · 1d5ac604
  Dominik Brilhaus authored 4 weeks ago
  
  1d5ac604
Mar 17, 2025
- cleaning · 988ac506
  Dominik Brilhaus authored 4 weeks ago
  
  988ac506
- convert shiny to single-step cwl · f099f06d
  Dominik Brilhaus authored 4 weeks ago
  
  f099f06d
- start to cwl-wrap shiny app · 0f5de5cb
  Dominik Brilhaus authored 4 weeks ago
  
  0f5de5cb
Mar 14, 2025
- rename workflow to sleuth · c572b83d
  Dominik Brilhaus authored 1 month ago
  
  c572b83d
- rm deprecated isa merge · 62287362
  Dominik Brilhaus authored 1 month ago
  
  62287362
- fixed kallisto_collect · 12915113
  Dominik Brilhaus authored 1 month ago
  
  12915113
- try fix kallisto collect · 9ad6fdd6
  Dominik Brilhaus authored 1 month ago
  
  9ad6fdd6
- add short explanation · b336ca0f
  Dominik Brilhaus authored 1 month ago
  
  b336ca0f
- deseq: use csv as input, return svg figures · 9146ed60
  Dominik Brilhaus authored 1 month ago
  
  9146ed60
- adapt isaSampleToRawDataSeq to start from Source (not Sample) · 26181b2f
  Dominik Brilhaus authored 1 month ago
  
  26181b2f
- try fix kallisto_vollect (fails due to docker deps) · effde36d
  Dominik Brilhaus authored 1 month ago
  
  effde36d
- align with spec: kallisto · 693ee201
  Dominik Brilhaus authored 1 month ago
  
  693ee201
- remove cwl aux-tools · 7efff571
  Dominik Brilhaus authored 1 month ago
  
  7efff571
- align with spec: isaSampleToRawData · be46d9df
  Dominik Brilhaus authored 1 month ago
  
  be46d9df
- outcomment tests · 7aa6183e
  Dominik Brilhaus authored 1 month ago
  
  7aa6183e
- align with spec: deseq2 (needs fix, missing dep) · 6c9a0b87
  Dominik Brilhaus authored 1 month ago
  
  6c9a0b87
Dec 02, 2024
- add email adresses · 0d104868
  Dominik Brilhaus authored 4 months ago
  
  0d104868
Nov 18, 2024
- Delete placeholder.cwl to test validation · 43d115dd
  Dominik Brilhaus authored 4 months ago
  
  43d115dd
Nov 10, 2024
- switch metadata input · 46773aa6
  Dominik Brilhaus authored 5 months ago
  
  46773aa6
Nov 07, 2024
- fix isa sample process reader · a3a1fdb8
  Dominik Brilhaus authored 5 months ago
  
  a3a1fdb8
- fix issue with data nodes now being objects (not free text) · 7333e2b6
  Dominik Brilhaus authored 5 months ago
  
  7333e2b6
- add cwl dummies to test validation · edc6e7fa
  Dominik Brilhaus authored 5 months ago
  
  edc6e7fa
- allow factor list · 070b5035
  Dominik Brilhaus authored 5 months ago
  
  070b5035
- multi-docker works, cleanup · ffdece03
  Dominik Brilhaus authored 5 months ago
  
  ffdece03
Nov 05, 2024
- try building deseq2 docker · 6efab19f
  Dominik Brilhaus authored 5 months ago
  
  6efab19f
- switch docker · 4154e6a8
  Dominik Brilhaus authored 5 months ago
  
  4154e6a8
- notes · 7c076ffe
  Dominik Brilhaus authored 5 months ago
  
  7c076ffe
- try fix fsharp isa read · 8aaa8665
  Dominik Brilhaus authored 5 months ago
  
  8aaa8665
- deseq cwl works (without docker) · 8a4c41b4
  Dominik Brilhaus authored 5 months ago
  
  8a4c41b4
- towards wrap deseq in cwl · 95b5b5bd
  Dominik Brilhaus authored 5 months ago
  
  95b5b5bd