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Restructure cwl

Merged Restructure cwl
restructure-cwl into main
Merged Dominik Brilhaus requested to merge restructure-cwl into main
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workflows/deseq2/deseq2.R
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@@ -8,12 +8,12 @@ library("rhdf5")
@@ -8,12 +8,12 @@ library("rhdf5")
library("ggplot2")
library("ggplot2")
library("readxl")
library("readxl")
## In-and-out
# ## Tests
inKallistoResults <- "../../runs/kallisto/kallisto_results"
# inKallistoResults <- "../../runs/kallisto/kallisto_results"
inMetadataFile <- "../../runs/isaSampleToRawDataSeq-run/rnaseq-samples.xlsx"
# inMetadataFile <- "../../runs/isaSampleToRawDataSeq-run/rnaseq-samples.xlsx"
inMetadataSample <- "Input [Source Name]"
# inMetadataSample <- "Input [Source Name]"
inMetadataFactorList <- list("Factor [Photosynthesis mode]")
# inMetadataFactorList <- list("Factor [Photosynthesis mode]")
### Read arguments from CLI
### Read arguments from CLI