Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
Facultative CAM in Talinum
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Package Registry
Container Registry
Model registry
Operate
Environments
Terraform modules
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Dominik Brilhaus
Facultative CAM in Talinum
Merge requests
!13
Cwl shiny
Code
Review changes
Check out branch
Download
Patches
Plain diff
Merged
Cwl shiny
cwl-shiny
into
main
Overview
0
Commits
3
Pipelines
2
Changes
5
Merged
Dominik Brilhaus
requested to merge
cwl-shiny
into
main
2 months ago
Overview
0
Commits
3
Pipelines
2
Changes
5
Expand
0
0
Merge request reports
Viewing commit
988ac506
Prev
Next
Show latest version
5 files
+
0
−
53
Side-by-side
Compare changes
Side-by-side
Inline
Show whitespace changes
Show one file at a time
Files
5
Search (e.g. *.vue) (Ctrl+P)
988ac506
cleaning
· 988ac506
Dominik Brilhaus
authored
2 months ago
runs/kallisto/single-steps/README.md deleted
100644 → 0
+
0
−
16
Options
# Kallisto
## Executing individual steps
### Create genome index
```
bash
cwltool ../../../workflows/kallisto/kallisto-index.cwl index.yml
```
### Quantification of a single sample
```
bash
cwltool ../../../workflows/kallisto/kallisto-quant.cwl quant.yml
```
Loading
