fix docker

• fix docker container (now using multi-package container from BioContainers)
• allow a factor list as input

workflows/deseq2/Dockerfile

-FROM quay.io/biocontainers/bioconductor-deseq2:1.42.0--r43hf17093f_2
-
-# Since our base image is an R docker base we will use BiocManager install
+FROM rstudio/r-base:4.3-jammy
 
 RUN apt-get update && \ 
-    R -e "install.packages(c('BiocManager'), repos='https://cloud.r-project.org/');BiocManager::install('tximport')" && \
+    R -e "install.packages(c('BiocManager'), repos='https://cloud.r-project.org/'); BiocManager::install('DESeq2'); BiocManager::install('tximport'); BiocManager::install('rhdf5'); \\" && \
     apt-get clean -y
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