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CEPLAS
Germann-2023
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da811409
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da811409
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1 year ago
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Viktoria Petrova
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add Figure 1 caption
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assays/MetabolicModeling/README.md
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### Figure caption
**Figure 1**
Overview of fluxes predicted to change upon increased squalene production. Blue arrows indicate an increased flux and red arrows a decreased flux, respectively. Black arrows indicate no change. Reactions with no flux have a dotted line. The numbers indicate the maximum fold change of the corresponding flux. It is stated that this is not a minimal network but a part of the genome-scale model and not all active reactions are shown. 13DPG, 1;3-bisphosphoglycerate; 2OG, 2-oxoglutarate; 2PGL, 2-phosphoglycolate; AcCoA, acetyl-CoA; ATP synth., ATP synthase; CDP-ME, 4-(cytidine 5′-diphospho)-2-C-methyl-D-erythritol; CDP-MEP, 2-phospho-4-(cytidine 5′-diphospho)-2-C-methyl-D-erythritol; Cit, citrate; Cytb6f, cytochrome b6f complex; DHAP, dihydroxyacetone phosphate; DMAPP, dimethylallyl diphosphate; DXP, 1-deoxy-D-xylulose 5-phosphate; E4P, erythrose 4-phosphate; F6P, fructose 6-phosphate; Fdox, ferredoxin (oxidized); Fdred, ferredoxin (reduced); FDP, fructose 1;6-biphosphate; FNR, ferredoxin-NADP+ reductase; FPP, farnesyl pyrophosphate; Fum, fumarate; G3P, glyceraldehyde 3-phosphate; Glc, D-glycerate; Glx, glyoxylate; Gly, glycolate; GPP, geranyl pyrophosphate; HMBPP, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate; IsoCit, isocitrate; IPP, isopentenyl diphosphate; Mal, malonate; MEcPP, 2-C-methyl-D-erythritol 2;4-cyclodiphosphate; MEP, 2-C-methyl-D-erythritol 4-phosphate; NDH, NADPH dehydrogenase; OAA, oxaloacetate; PC, plastocyanin; PEP, phosphoenolpyruvate; PG2, 2-phosphoglycerate; PG3, 3-phosphoglycerate; Pi, orthophosphate; PPi, diphosphate; PQ, plastoquinone; PQH2, plastohydroquinone; PSI, photosystem I; PSII, photosystem II; Pyr, pyruvate; R5P, ribose 5-phosphate; Ru5P, ribulose 5-phosphate; RuBP, ribulose 1;5-biphosphate; S17DP, sedoheptulose 1;7-bisphosphate; S7P, sedoheptulose 7-phosphate; Succ, succinate; X5P, xylulose 5-phosphate.
### Figure source
https://www.frontiersin.org/files/Articles/1024981/fpls-14-1024981-HTML/image_m/fpls-14-1024981-g001.jpg
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