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Figure 1. Average ATAC- and ChIP-seq coverage ±3 kpb around the TSS for each species in the dataset. (a) Average ATAC-seq coverage including unplaced scaffolds and non-nuclear sequences. (b) Average ATAC- and ChIP-seq coverage excluding unplaced scaffolds and non-nuclear sequences. The species are sorted into the three categories dicots, monocots, and algae/mosses.

Figure source

https://academic.oup.com/view-large/figure/464175126/vbae074f1.tif

Table 1. Plant genomes and available datasets.

Domain Species ATAC-seq ChIP-seq (H3K4me3)
Algae Bigelowiella natans ✔️
Chlamydomonas reinhardtii ✔️
Mosses Marchantia polymorpha ✔️ ✔️
Monocots Brachypodium distachyon ✔️ ✔️
Eragrostis nindensis ✔️ ✔️
Oropetium thomaeum ✔️
Oryza brachyantha ✔️
Oryza sativa ✔️ ✔️
Panicum miliaceum ✔️
Setaria italica ✔️
Sorghum bicolor ✔️
Spirodela polyrhiza ✔️ ✔️
Zea mays ✔️ ✔️
Dicots Actinidia chinensis ✔️ ✔️
Arabidopsis thaliana ✔️ ✔️
Brassica napus ✔️ ✔️
Brassica oleracea ✔️
Brassica rapa ✔️
Glycine max ✔️ ✔️
Malus domestica ✔️ ✔️
Medicago truncatula ✔️ ✔️
Prunus persica ✔️
Pyrus x bretschneideri ✔️
Sesamum indicum ✔️
Solanum lycopersicum ✔️ ✔️