
Figure 1. Average ATAC- and ChIP-seq coverage ±3 kpb around the TSS for each species in the dataset. (a) Average ATAC-seq coverage including unplaced scaffolds and non-nuclear sequences. (b) Average ATAC- and ChIP-seq coverage excluding unplaced scaffolds and non-nuclear sequences. The species are sorted into the three categories dicots, monocots, and algae/mosses.
Figure source
https://academic.oup.com/view-large/figure/464175126/vbae074f1.tif
Table 1. Plant genomes and available datasets.
Domain | Species | ATAC-seq | ChIP-seq (H3K4me3) |
---|---|---|---|
Algae | Bigelowiella natans | ✔️ | |
Chlamydomonas reinhardtii | ✔️ | ||
Mosses | Marchantia polymorpha | ✔️ | ✔️ |
Monocots | Brachypodium distachyon | ✔️ | ✔️ |
Eragrostis nindensis | ✔️ | ✔️ | |
Oropetium thomaeum | ✔️ | ||
Oryza brachyantha | ✔️ | ||
Oryza sativa | ✔️ | ✔️ | |
Panicum miliaceum | ✔️ | ||
Setaria italica | ✔️ | ||
Sorghum bicolor | ✔️ | ||
Spirodela polyrhiza | ✔️ | ✔️ | |
Zea mays | ✔️ | ✔️ | |
Dicots | Actinidia chinensis | ✔️ | ✔️ |
Arabidopsis thaliana | ✔️ | ✔️ | |
Brassica napus | ✔️ | ✔️ | |
Brassica oleracea | ✔️ | ||
Brassica rapa | ✔️ | ||
Glycine max | ✔️ | ✔️ | |
Malus domestica | ✔️ | ✔️ | |
Medicago truncatula | ✔️ | ✔️ | |
Prunus persica | ✔️ | ||
Pyrus x bretschneideri | ✔️ | ||
Sesamum indicum | ✔️ | ||
Solanum lycopersicum | ✔️ | ✔️ |