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Key Resources Table

REAGENT or RESOURCE SOURCE IDENTIFIER
Deposited Data
16S sequencing data This paper https://www.ebi.ac.uk/ena/browser/home (Accession number: PRJEB63568)
Metabolomics data This paper https://www.metabolomicsworkbench.org/ (Study ID: ST002779)
Arabidopsis root spatial microarray [https://doi.org/10.1126/science.1146265] GEO dataset: GSE8934 ID: 200008934
NIST14 Mass Spectral Library https://www.nist.gov/srd/nist-standard-reference-database-1a-v14 N/A
Arabidopsis thaliana Col-0 metabolic pathways https://pmn.plantcyc.org/organism-summary?object=ARA N/A
Software and Algorithms
iGraph https://CRAN.R-project.org/package=igraph. RRID:SCR_019225
COBRApy http://opencobra.sourceforge.net RRID:SCR_012096
GUROBI https://www.gurobi.com/ N/A
statsmodels https://www.statsmodels.org/stable/index.html RRID:SCR_016074
Vegan https://cran.r-project.org/web/packages/vegan/index.html RRID:SCR_011950
Qiime2 https://qiime2.org/ RRID:SCR_008249
Flash2 https://github.com/dstreett/FLASH2 RRID:SCR_005531
Dada2 https://benjjneb.github.io/dada2 RRID:SCR_008205
Others
16S data analyses This work GitHub https://github.com/duranpa/sweet_collaboration