workflows/BSA/RNAseq/run_STAR.sh

workflows/BSA/RNAseq/run_kallisto.sh

workflows/BSA/WGS/combined_filter.sh

workflows/BSA/WGS/map_reads.sh

workflows/BSA/betalain_quantification.Rmd

workflows/BSA/bsa_and_plotting.R

workflows/BSA/read_count_analysis.Rmd

workflows/BSA/read_count_analysis_from_bam.Rmd

workflows/BSA/snpEff_analysis.Rmd

workflows/genome_polishing/helper_script.R

workflows/genome_polishing/process_nextpolish_output.sh

workflows/genome_polishing/remove_ambiguous_bases.sh

workflows/genome_polishing/run_nextpolish.sh

workflows/genome_polishing/unpackSRA.sh