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environment.yaml

+name: PoreC-env
+channels:
+  - nanoporetech
+  - conda-forge
+  - bioconda
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1=conda_forge
+  - _openmp_mutex=4.5=2_gnu
+  - amply=0.1.6=pyhd8ed1ab_0
+  - asciitree=0.3.3=py_2
+  - aws-c-auth=0.7.20=h5f1c8d9_0
+  - aws-c-cal=0.6.12=h2ba76a8_0
+  - aws-c-common=0.9.17=h4ab18f5_0
+  - aws-c-compression=0.2.18=h36a0aea_4
+  - aws-c-event-stream=0.4.2=h161de36_10
+  - aws-c-http=0.8.1=h63f54a0_13
+  - aws-c-io=0.14.8=h96d4d28_0
+  - aws-c-mqtt=0.10.4=hcc7299c_2
+  - aws-c-s3=0.5.8=h10bd90f_3
+  - aws-c-sdkutils=0.1.16=h36a0aea_0
+  - aws-checksums=0.1.18=h36a0aea_4
+  - aws-crt-cpp=0.26.8=h02fd9b4_10
+  - aws-sdk-cpp=1.11.267=h51dfee4_8
+  - bioframe=0.6.4=pyhdfd78af_0
+  - biopython=1.83=py38h01eb140_0
+  - blas=1.1=openblas
+  - bokeh=3.1.1=pyhd8ed1ab_0
+  - brotli=1.1.0=hd590300_1
+  - brotli-bin=1.1.0=hd590300_1
+  - brotli-python=1.1.0=py38h17151c0_1
+  - bzip2=1.0.8=hd590300_5
+  - c-ares=1.28.1=hd590300_0
+  - ca-certificates=2024.2.2=hbcca054_0
+  - cached-property=1.5.2=hd8ed1ab_1
+  - cached_property=1.5.2=pyha770c72_1
+  - certifi=2024.2.2=pyhd8ed1ab_0
+  - cffi=1.16.0=py38h6d47a40_0
+  - charset-normalizer=3.3.2=pyhd8ed1ab_0
+  - click=8.1.7=unix_pyh707e725_0
+  - cloudpickle=3.0.0=pyhd8ed1ab_0
+  - coin-or-cbc=2.10.10=h9002f0b_0
+  - coin-or-cgl=0.60.7=h516709c_0
+  - coin-or-clp=1.17.8=h1ee7a9c_0
+  - coin-or-osi=0.108.10=haf5fa05_0
+  - coin-or-utils=2.11.11=hee58242_0
+  - coincbc=2.10.10=0_metapackage
+  - contourpy=1.1.1=py38h7f3f72f_1
+  - cooler=0.9.3=pyhdfd78af_0
+  - coreutils=9.5=hd590300_0
+  - cycler=0.12.1=pyhd8ed1ab_0
+  - cytoolz=0.12.3=py38h01eb140_0
+  - dask=2023.5.0=pyhd8ed1ab_0
+  - dask-core=2023.5.0=pyhd8ed1ab_0
+  - dill=0.3.8=pyhd8ed1ab_0
+  - distributed=2023.5.0=pyhd8ed1ab_0
+  - docutils=0.20.1=py38h578d9bd_3
+  - fonttools=4.51.0=py38h01eb140_0
+  - freetype=2.12.1=h267a509_2
+  - fsspec=2024.3.1=pyhca7485f_0
+  - gflags=2.2.2=he1b5a44_1004
+  - glog=0.7.0=hed5481d_0
+  - h5py=3.11.0=nompi_py38h2c1edd7_100
+  - hdf5=1.14.3=nompi_h4f84152_101
+  - hic2cool=1.0.1=pyh7cba7a3_0
+  - htslib=1.20=h81da01d_0
+  - idna=3.7=pyhd8ed1ab_0
+  - importlib-metadata=7.1.0=pyha770c72_0
+  - importlib_metadata=7.1.0=hd8ed1ab_0
+  - isa-l=2.31.0=hd590300_1
+  - jinja2=3.1.4=pyhd8ed1ab_0
+  - keyutils=1.6.1=h166bdaf_0
+  - kiwisolver=1.4.5=py38h7f3f72f_1
+  - krb5=1.21.2=h659d440_0
+  - lcms2=2.16=hb7c19ff_0
+  - ld_impl_linux-64=2.40=h55db66e_0
+  - lerc=4.0.0=h27087fc_0
+  - libabseil=20240116.2=cxx17_h59595ed_0
+  - libaec=1.1.3=h59595ed_0
+  - libarrow=13.0.0=ha811a96_37_cpu
+  - libblas=3.9.0=22_linux64_openblas
+  - libbrotlicommon=1.1.0=hd590300_1
+  - libbrotlidec=1.1.0=hd590300_1
+  - libbrotlienc=1.1.0=hd590300_1
+  - libcblas=3.9.0=22_linux64_openblas
+  - libcrc32c=1.1.2=h9c3ff4c_0
+  - libcurl=8.7.1=hca28451_0
+  - libdeflate=1.19=hd590300_0
+  - libedit=3.1.20191231=he28a2e2_2
+  - libev=4.33=hd590300_2
+  - libevent=2.1.12=hf998b51_1
+  - libffi=3.4.2=h7f98852_5
+  - libgcc-ng=13.2.0=h77fa898_7
+  - libgfortran-ng=13.2.0=h69a702a_7
+  - libgfortran5=13.2.0=hca663fb_7
+  - libgomp=13.2.0=h77fa898_7
+  - libgoogle-cloud=2.23.0=h9be4e54_1
+  - libgoogle-cloud-storage=2.23.0=hc7a4891_1
+  - libgrpc=1.62.2=h15f2491_0
+  - libjpeg-turbo=3.0.0=hd590300_1
+  - liblapack=3.9.0=22_linux64_openblas
+  - liblapacke=3.9.0=22_linux64_openblas
+  - libnghttp2=1.58.0=h47da74e_1
+  - libnl=3.9.0=hd590300_0
+  - libnsl=2.0.1=hd590300_0
+  - libopenblas=0.3.27=pthreads_h413a1c8_0
+  - libpng=1.6.43=h2797004_0
+  - libprotobuf=4.25.3=h08a7969_0
+  - libre2-11=2023.09.01=h5a48ba9_2
+  - libsqlite=3.45.3=h2797004_0
+  - libssh2=1.11.0=h0841786_0
+  - libstdcxx-ng=13.2.0=hc0a3c3a_7
+  - libthrift=0.19.0=hb90f79a_1
+  - libtiff=4.6.0=ha9c0a0a_2
+  - libutf8proc=2.8.0=h166bdaf_0
+  - libuuid=2.38.1=h0b41bf4_0
+  - libwebp-base=1.4.0=hd590300_0
+  - libxcb=1.15=h0b41bf4_0
+  - libxcrypt=4.4.36=hd590300_1
+  - libzlib=1.2.13=hd590300_5
+  - locket=1.0.0=pyhd8ed1ab_0
+  - lz4=4.3.3=py38hdcd8cb4_0
+  - lz4-c=1.9.4=hcb278e6_0
+  - markupsafe=2.1.5=py38h01eb140_0
+  - matplotlib-base=3.5.3=py38h38b5ce0_2
+  - msgpack-python=1.0.8=py38hea7755e_0
+  - multiprocess=0.70.16=py38h01eb140_0
+  - munkres=1.1.4=pyh9f0ad1d_0
+  - ncurses=6.5=h59595ed_0
+  - networkx=2.8.8=pyhd8ed1ab_0
+  - numpy=1.24.4=py38h59b608b_0
+  - openblas=0.3.27=pthreads_h7a3da1a_0
+  - openjpeg=2.5.2=h488ebb8_0
+  - openssl=3.3.0=hd590300_0
+  - orc=2.0.0=h17fec99_1
+  - packaging=24.0=pyhd8ed1ab_0
+  - pairix=0.3.8=py38h7cf9df2_1
+  - pairtools=1.1.0=py38hd5d73cc_0
+  - pandas=2.0.3=py38h01efb38_1
+  - partd=1.4.1=pyhd8ed1ab_0
+  - pbgzip=2016.08.04=h9d449c0_5
+  - pbzip2=1.1.13=h1fcc475_2
+  - perl=5.32.1=7_hd590300_perl5
+  - pigz=2.8=h2797004_0
+  - pillow=10.3.0=py38h9e66945_0
+  - pip=24.0=pyhd8ed1ab_0
+  - platformdirs=4.2.1=pyhd8ed1ab_0
+  - pooch=1.8.1=pyhd8ed1ab_0
+  - pore-c-py=2.1.2=py_0
+  - psutil=5.9.8=py38h01eb140_0
+  - pthread-stubs=0.4=h36c2ea0_1001
+  - pulp=2.8.0=py38h578d9bd_0
+  - pyarrow=13.0.0=py38hc396e17_37_cpu
+  - pycparser=2.22=pyhd8ed1ab_0
+  - pyfaidx=0.8.1.1=pyhdfd78af_0
+  - pyparsing=3.1.2=pyhd8ed1ab_0
+  - pysam=0.22.0=py38h9bf148f_1
+  - pysocks=1.7.1=pyha2e5f31_6
+  - python=3.8.19=hd12c33a_0_cpython
+  - python-dateutil=2.9.0=pyhd8ed1ab_0
+  - python-isal=1.6.1=py38h01eb140_0
+  - python-tzdata=2024.1=pyhd8ed1ab_0
+  - python-zlib-ng=0.4.3=py38hd7de54c_0
+  - python_abi=3.8=4_cp38
+  - pytz=2024.1=pyhd8ed1ab_0
+  - pyvcf3=1.0.3=pyhdfd78af_0
+  - pyyaml=6.0.1=py38h01eb140_1
+  - rdma-core=51.0=hd3aeb46_0
+  - re2=2023.09.01=h7f4b329_2
+  - readline=8.2=h8228510_1
+  - requests=2.31.0=pyhd8ed1ab_0
+  - s2n=1.4.13=he19d79f_0
+  - samtools=1.20=h50ea8bc_0
+  - scipy=1.10.1=py38h32ae08f_1
+  - setuptools=69.5.1=pyhd8ed1ab_0
+  - simplejson=3.19.2=py38h01eb140_0
+  - six=1.16.0=pyh6c4a22f_0
+  - snappy=1.2.0=hdb0a2a9_1
+  - sortedcontainers=2.4.0=pyhd8ed1ab_0
+  - tblib=3.0.0=pyhd8ed1ab_0
+  - tk=8.6.13=noxft_h4845f30_101
+  - toolz=0.12.1=pyhd8ed1ab_0
+  - tornado=6.4=py38h01eb140_0
+  - ucx=1.15.0=ha691c75_8
+  - unicodedata2=15.1.0=py38h01eb140_0
+  - urllib3=2.2.1=pyhd8ed1ab_0
+  - whatshap=2.3=py38h2494328_0
+  - wheel=0.43.0=pyhd8ed1ab_1
+  - xopen=2.0.1=py38h578d9bd_0
+  - xorg-libxau=1.0.11=hd590300_0
+  - xorg-libxdmcp=1.1.3=h7f98852_0
+  - xyzservices=2024.4.0=pyhd8ed1ab_0
+  - xz=5.2.6=h166bdaf_0
+  - yaml=0.2.5=h7f98852_2
+  - zict=3.0.0=pyhd8ed1ab_0
+  - zipp=3.17.0=pyhd8ed1ab_0
+  - zlib=1.2.13=hd590300_5
+  - zlib-ng=2.0.7=h0b41bf4_0
+  - zstandard=0.22.0=py38ha98ab4e_0
+  - zstd=1.5.5=hfc55251_0
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