Skip to content
Snippets Groups Projects
Commit 0e7c9ab7 authored by Manuel Feser's avatar Manuel Feser
Browse files

Imported barley-trial setup data

parent a4e7435a
No related branches found
No related tags found
No related merge requests found
Pipeline #2969 passed
Stage: arc_json
    Stage: quality_report_generator
      Expand all Hide whitespace changes
      Inline Side-by-side
      Showing
      with 13 additions and 97 deletions
      assays/with-observation-units/isa.assay.xlsx 0 → 100644
      + 0
      − 0
      View file @ 0e7c9ab7
      File added
      assays/without-observation-units/isa.assay.xlsx 0 → 100644
      + 0
      − 0
      View file @ 0e7c9ab7
      File added
      assays/yourAssayName/README.md deleted 100644 → 0
      + 0
      − 0
      View file @ a4e7435a
      assays/yourAssayName/dataset/.gitkeep deleted 100644 → 0
      + 0
      − 0
      View file @ a4e7435a
      assays/yourAssayName/dataset/README.md deleted 100644 → 0
      + 0
      − 5
      View file @ a4e7435a
      ## ARCs
      ### Assays
      `/assays/<yourAssayName>/dataset`
      : assay dataset
      assays/yourAssayName/isa.assay.xlsx deleted 100644 → 0
      + 0
      − 0
      View file @ a4e7435a
      File deleted
      assays/yourAssayName/isa.datapackage.xlsx deleted 100644 → 0
      + 0
      − 0
      View file @ a4e7435a
      File deleted
      assays/yourAssayName/protocols/.gitkeep deleted 100644 → 0
      + 0
      − 0
      View file @ a4e7435a
      assays/yourAssayName/protocols/README.md deleted 100644 → 0
      + 0
      − 5
      View file @ a4e7435a
      ## ARCs
      ### Assays
      `/assays/<yourAssayName>/protocols`
      : assay protocol as text (e.g SOP)
      isa.investigation.xlsx
      + 0
      − 0
      View file @ 0e7c9ab7
      No preview for this file type
      metadata.json 0 → 100644
      + 1
      − 0
      View file @ 0e7c9ab7
      This diff is collapsed.
      runs/yourRunName.cwl deleted 100644 → 0
      + 0
      − 15
      View file @ a4e7435a
      cwlVersion: v1.0
      class: CommandLineTool
      baseCommand: [fsi.exe, //workflows/FSharpCodespace/script1.fsx]
      inputs:
      inputFiles:
      type:
      type: array
      items: string
      inputBinding:
      position: 1
      outputs:
      plotted_data:
      type: File
      outputBinding:
      glob: $(inputs.plot)
      runs/yourRunName.yml deleted 100644 → 0
      + 0
      − 5
      View file @ a4e7435a
      inputFiles:
      - /…/assays/yourAssay/dataset/Sample1.txt
      - /…/assays/yourAssay/dataset/Sample2.dat
      - /…/assays/yourAssay/dataset/Sample3.txt
      plot: ./yourRunResultName/plot1.html
      runs/yourRunResultName/README.md deleted 100644 → 0
      + 0
      − 6
      View file @ a4e7435a
      # ARCs
      ## ARC directory structure
      `./runs/<yourRunResultName>`
      : folder for results of your run aka. workflow execution
      runs/yourRunResultName/plot1.html deleted 100644 → 0
      + 0
      − 61
      View file @ a4e7435a
      <!DOCTYPE html>
      <html>
      <head>
      <!-- Plotly.js -->
      <meta http-equiv="X-UA-Compatible" content="IE=11" >
      <script src="https://cdn.plot.ly/plotly-latest.min.js"></script>
      <style>
      .container {
      padding-right: 25px;
      padding-left: 25px;
      margin-right: 0 auto;
      margin-left: 0 auto;
      }
      @media (min-width: 768px) {
      .container {
      width: 750px;
      }
      }
      @media (min-width: 992px) {
      .container {
      width: 970px;
      }
      }
      @media (min-width: 1200px) {
      .container {
      width: 1170px;
      }
      }
      </style>
      </head>
      <body>
      <div id="47e0f579-9104-4805-94b5-51152897c859" style="width: 600px; height: 600px;"><!-- Plotly chart will be drawn inside this DIV --></div>
      <script type="text/javascript">
      var renderPlotly = function() {
      var fsharpPlotlyRequire = requirejs.config({context:'fsharp-plotly',paths:{plotly:'https://cdn.plot.ly/plotly-latest.min'}});
      fsharpPlotlyRequire(['plotly'], function(Plotly) {
      var data = [{"type":"scatter","x":[1.0],"y":[2.0],"mode":"markers","marker":{}}];
      var layout = {};
      var config = {};
      Plotly.newPlot('47e0f579-9104-4805-94b5-51152897c859', data, layout, config);
      });
      };
      if ((typeof(requirejs) !== typeof(Function)) || (typeof(requirejs.config) !== typeof(Function))) {
      var script = document.createElement("script");
      script.setAttribute("src", "https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js");
      script.onload = function(){
      renderPlotly();
      };
      document.getElementsByTagName("head")[0].appendChild(script);
      }
      else {
      renderPlotly();
      }
      </script>
      </body>
      </html>
      \ No newline at end of file
      studies/with-observation-units/isa.study.xlsx 0 → 100644
      + 0
      − 0
      View file @ 0e7c9ab7
      File added
      studies/with-observation-units/tdf.tsv 0 → 100644
      + 6
      − 0
      View file @ 0e7c9ab7
      Variable ID Variable Name Variable Accession Number Trait Trait Accession Number Method Method Accession Number Method Description Scale Scale Accession Number Scale Type Scale Values
      AwnTip_M_date Awn tipping Awn tipping Measurement Record the date when 50% of the awns have tipped Date Date
      Head_M_date Heading Heading Measurement Record date when 50% of the heads have emerged Date Date
      Mat_M_date Maturity Maturity Measurement Record date when 50% of the heads have matured Date Date
      PlntHght_M_cm Plant height Plant height Measurement Record the height of the plant in centimeters cm Numerical
      RwTyp_E_1to2 Row type Row type Estimation Score the row type of the plant 1to2 Nominal 2:2-rowed;6:6-rowed
      \ No newline at end of file
      studies/without-observation-units/isa.study.xlsx 0 → 100644
      + 0
      − 0
      View file @ 0e7c9ab7
      File added
      studies/without-observation-units/tdf.tsv 0 → 100644
      + 6
      − 0
      View file @ 0e7c9ab7
      Variable ID Variable Name Variable Accession Number Trait Trait Accession Number Method Method Accession Number Method Description Scale Scale Accession Number Scale Type Scale Values
      AwnTip_M_date Awn tipping Awn tipping Measurement Record the date when 50% of the awns have tipped Date Date
      Head_M_date Heading Heading Measurement Record date when 50% of the heads have emerged Date Date
      Mat_M_date Maturity Maturity Measurement Record date when 50% of the heads have matured Date Date
      PlntHght_M_cm Plant height Plant height Measurement Record the height of the plant in centimeters cm Numerical
      RwTyp_E_1to2 Row type Row type Estimation Score the row type of the plant 1to2 Nominal 2:2-rowed;6:6-rowed
      \ No newline at end of file
      studies/yourStudyName/README.md deleted 100644 → 0
      + 0
      − 0
      View file @ a4e7435a
      0% or .
      You are about to add 0 people to the discussion. Proceed with caution.
      Finish editing this message first!
      Please register or to comment