README.md

Slides

• slides01_housekeeping.pdf

  • Welcome / intro
  • Agendas
  • Wrap-ups
  • Feedbacks
  • Games / Activation

• [slides02_biocomputing]((slides02_biocomputing.pdf)

  • need for computing
  • don't fear the terminal

• slides03_experimental

  • Experimental design
  • quality RNA / quality control
  • illumina workflow

• slides04_quantification

  • de-multiplexing
  • trimming
  • alignment, mapping, quantification

• slides05_bio_knowledge

  • normalization

• slides06_statistics

  • Count data
  • Negative binomial
  • Multiple hypothesis correction, FDR

• slides07_clustering

  • distance metrics
  • hierarchical
  • k-means
  • PCA

• slides08_long_reads

  • isoform sequencing
  • IsoSeq + Nanopore
  • technique, experimental, analysis

• slides09_resources

  • data
  • tools
  • help