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Commit 2f6e0776 authored by Alisandra Denton's avatar Alisandra Denton
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usage for new UID matching docker

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# docker setup
rebuild the image with one final detail so as to
match the UID of the host and be able to share files
w/o continuous premission trouble
## build docker image
`sudo docker build --build-arg USERID=$(id -u) -t rnaseqme --rm .`
## start docker container
Do this from the parent directory of the 'rnaseq-workshop' repository, so that the mounted folder contains the repository
`sudo docker run -it --name rnalive --rm --mount type=bind,source="$(pwd)"/rnaseq-workshop,target=/home/zim-gast/rnaseq-workshop rnaseqme:latest`
Or for course participants
`docker run -it --name rnalive --mount type=bind,source="$(pwd)"/rnaseq-workshop,target=/home/zim-gast/rnaseq-workshop rnaseqme:latest`
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