Compare revisions

c969af21 · c969af21 · c969af21 · c969af21 · c969af21 · c969af21
--- a/runs/association_gff/downstream/d_tenuifolia_te_gene_associaton.gff3
+++ b/runs/association_gff/downstream/d_tenuifolia_te_gene_associaton.gff3
--- a/runs/association_gff/downstream/d_viminea_te_gene_associaton.gff3
+++ b/runs/association_gff/downstream/d_viminea_te_gene_associaton.gff3
--- a/runs/association_gff/downstream/h_incana1_te_gene_associaton.gff3
+++ b/runs/association_gff/downstream/h_incana1_te_gene_associaton.gff3
--- a/runs/association_gff/downstream/h_incana3_te_gene_associaton.gff3
+++ b/runs/association_gff/downstream/h_incana3_te_gene_associaton.gff3
--- a/runs/association_gff/downstream/m_arvensis_te_gene_associaton.gff3
+++ b/runs/association_gff/downstream/m_arvensis_te_gene_associaton.gff3
--- a/runs/association_gff/downstream/m_moricandioides_te_gene_associaton.gff3
+++ b/runs/association_gff/downstream/m_moricandioides_te_gene_associaton.gff3
--- a/runs/association_gff/downstream/m_nitens_te_gene_associaton.gff3
+++ b/runs/association_gff/downstream/m_nitens_te_gene_associaton.gff3
--- a/runs/association_gff/downstream/m_suffruticosa_te_gene_associaton.gff3
+++ b/runs/association_gff/downstream/m_suffruticosa_te_gene_associaton.gff3
--- a/runs/association_gff/inside/a_alpina_te_gene_associaton.gff3
+++ b/runs/association_gff/inside/a_alpina_te_gene_associaton.gff3
--- a/runs/association_gff/inside/a_thaliana_te_gene_associaton.gff3
+++ b/runs/association_gff/inside/a_thaliana_te_gene_associaton.gff3
+250748	CP002686	HelixerPost	gene	430898	448644	.	-	.	ID=a_thaliana_shortenedheade_CP002686_005291;associated_TE_type=MITE/DTC
+249922	CP002686	HelixerPost	gene	767886	775239	.	-	.	ID=a_thaliana_shortenedheade_CP002686_005241;associated_TE_type=DNA/DTM
+249882	CP002686	HelixerPost	gene	778561	781648	.	-	.	ID=a_thaliana_shortenedheade_CP002686_005239;associated_TE_type=MITE/DTM
+174304	CP002686	HelixerPost	gene	986963	990904	.	+	.	ID=a_thaliana_shortenedheade_CP002686_000157;associated_TE_type=MITE/DTC
+237810	CP002686	HelixerPost	gene	5520930	5525096	.	-	.	ID=a_thaliana_shortenedheade_CP002686_004500;associated_TE_type=MITE/DTM
+226881	CP002686	HelixerPost	gene	14775895	14782319	.	-	.	ID=a_thaliana_shortenedheade_CP002686_003718;associated_TE_type=LTR/unknown
+109011	CP002685	HelixerPost	gene	205978	212046	.	+	.	ID=a_thaliana_shortenedheade_CP002685_000015;associated_TE_type=DNA/DTC
+116944	CP002685	HelixerPost	gene	7853428	7857194	.	+	.	ID=a_thaliana_shortenedheade_CP002685_000611;associated_TE_type=DNA/DTA
+119710	CP002685	HelixerPost	gene	9227015	9230387	.	+	.	ID=a_thaliana_shortenedheade_CP002685_000785;associated_TE_type=DNA/Helitron
+120639	CP002685	HelixerPost	gene	9627352	9631311	.	+	.	ID=a_thaliana_shortenedheade_CP002685_000851;associated_TE_type=DNA/DTH
+122053	CP002685	HelixerPost	gene	10431444	10433036	.	+	.	ID=a_thaliana_shortenedheade_CP002685_000943;associated_TE_type=DNA/DTM
+155962	CP002685	HelixerPost	gene	12537678	12542348	.	-	.	ID=a_thaliana_shortenedheade_CP002685_003164;associated_TE_type=LTR/Copia
+155600	CP002685	HelixerPost	gene	12727988	12729625	.	-	.	ID=a_thaliana_shortenedheade_CP002685_003134;associated_TE_type=MITE/DTC
+130453	CP002685	HelixerPost	gene	14966638	14980703	.	+	.	ID=a_thaliana_shortenedheade_CP002685_001498;associated_TE_type=DNA/DTC
+149333	CP002685	HelixerPost	gene	15454689	15469917	.	-	.	ID=a_thaliana_shortenedheade_CP002685_002747;associated_TE_type=DNA/DTM
+135441	CP002685	HelixerPost	gene	17337736	17343351	.	+	.	ID=a_thaliana_shortenedheade_CP002685_001814;associated_TE_type=MITE/DTM
+145762	CP002685	HelixerPost	gene	17332072	17345581	.	-	.	ID=a_thaliana_shortenedheade_CP002685_002506;associated_TE_type=MITE/DTM
+140441	CP002685	HelixerPost	gene	19673238	19679709	.	+	.	ID=a_thaliana_shortenedheade_CP002685_002166;associated_TE_type=DNA/DTC
+320449	CP002688	HelixerPost	gene	2720772	2727211	.	+	.	ID=a_thaliana_shortenedheade_CP002688_000420;associated_TE_type=DNA/DTT
+397683	CP002688	HelixerPost	gene	4970172	4971476	.	-	.	ID=a_thaliana_shortenedheade_CP002688_005546;associated_TE_type=DNA/Helitron
+396701	CP002688	HelixerPost	gene	5406873	5411579	.	-	.	ID=a_thaliana_shortenedheade_CP002688_005484;associated_TE_type=DNA/DTC
+392909	CP002688	HelixerPost	gene	7103912	7106799	.	-	.	ID=a_thaliana_shortenedheade_CP002688_005250;associated_TE_type=MITE/DTM
+391551	CP002688	HelixerPost	gene	7683685	7685096	.	-	.	ID=a_thaliana_shortenedheade_CP002688_005176;associated_TE_type=MITE/DTM
+331245	CP002688	HelixerPost	gene	7919470	7929446	.	+	.	ID=a_thaliana_shortenedheade_CP002688_001105;associated_TE_type=DNA/DTM
+389594	CP002688	HelixerPost	gene	8599749	8603258	.	-	.	ID=a_thaliana_shortenedheade_CP002688_005060;associated_TE_type=DNA/Helitron
+334628	CP002688	HelixerPost	gene	9823712	9827168	.	+	.	ID=a_thaliana_shortenedheade_CP002688_001313;associated_TE_type=MITE/DTM
+386725	CP002688	HelixerPost	gene	13360054	13361514	.	-	.	ID=a_thaliana_shortenedheade_CP002688_004864;associated_TE_type=MITE/DTM
+386647	CP002688	HelixerPost	gene	13474150	13482669	.	-	.	ID=a_thaliana_shortenedheade_CP002688_004861;associated_TE_type=DNA/DTC
+386432	CP002688	HelixerPost	gene	13749630	13753517	.	-	.	ID=a_thaliana_shortenedheade_CP002688_004850;associated_TE_type=DNA/DTM
+386230	CP002688	HelixerPost	gene	13936057	13940944	.	-	.	ID=a_thaliana_shortenedheade_CP002688_004837;associated_TE_type=DNA/DTT
+337745	CP002688	HelixerPost	gene	15260938	15262857	.	+	.	ID=a_thaliana_shortenedheade_CP002688_001541;associated_TE_type=DNA/DTC
+341518	CP002688	HelixerPost	gene	17191483	17194245	.	+	.	ID=a_thaliana_shortenedheade_CP002688_001807;associated_TE_type=MITE/DTM
+380691	CP002688	HelixerPost	gene	17569203	17575040	.	-	.	ID=a_thaliana_shortenedheade_CP002688_004409;associated_TE_type=DNA/DTM
+379757	CP002688	HelixerPost	gene	18083330	18093674	.	-	.	ID=a_thaliana_shortenedheade_CP002688_004346;associated_TE_type=DNA/DTM
+344809	CP002688	HelixerPost	gene	19071844	19079337	.	+	.	ID=a_thaliana_shortenedheade_CP002688_002038;associated_TE_type=DNA/DTC
+345049	CP002688	HelixerPost	gene	19183632	19185664	.	+	.	ID=a_thaliana_shortenedheade_CP002688_002051;associated_TE_type=DNA/DTM
+376526	CP002688	HelixerPost	gene	19803523	19805111	.	-	.	ID=a_thaliana_shortenedheade_CP002688_004112;associated_TE_type=DNA/DTM
+354858	CP002688	HelixerPost	gene	23717726	23719748	.	+	.	ID=a_thaliana_shortenedheade_CP002688_002668;associated_TE_type=MITE/DTM
+359308	CP002688	HelixerPost	gene	25727341	25730381	.	+	.	ID=a_thaliana_shortenedheade_CP002688_002949;associated_TE_type=DNA/DTM
+310743	CP002687	HelixerPost	gene	2086894	2097822	.	-	.	ID=a_thaliana_shortenedheade_CP002687_003863;associated_TE_type=LTR/Gypsy
+309633	CP002687	HelixerPost	gene	4572730	4575834	.	-	.	ID=a_thaliana_shortenedheade_CP002687_003788;associated_TE_type=DNA/DTM
+309119	CP002687	HelixerPost	gene	5551223	5553150	.	-	.	ID=a_thaliana_shortenedheade_CP002687_003755;associated_TE_type=MITE/DTC
+304214	CP002687	HelixerPost	gene	8507387	8510077	.	-	.	ID=a_thaliana_shortenedheade_CP002687_003406;associated_TE_type=MITE/DTM
+267720	CP002687	HelixerPost	gene	11577410	11584040	.	+	.	ID=a_thaliana_shortenedheade_CP002687_001077;associated_TE_type=MITE/DTM
+297543	CP002687	HelixerPost	gene	11817946	11826454	.	-	.	ID=a_thaliana_shortenedheade_CP002687_002983;associated_TE_type=LTR/Gypsy
+270257	CP002687	HelixerPost	gene	12864533	12866818	.	+	.	ID=a_thaliana_shortenedheade_CP002687_001248;associated_TE_type=DNA/DTM
+270257	CP002687	HelixerPost	gene	12864533	12866818	.	+	.	ID=a_thaliana_shortenedheade_CP002687_001248;associated_TE_type=DNA/DTC
+270447	CP002687	HelixerPost	gene	12923855	12929168	.	+	.	ID=a_thaliana_shortenedheade_CP002687_001259;associated_TE_type=DNA/DTC
+294504	CP002687	HelixerPost	gene	13201939	13204147	.	-	.	ID=a_thaliana_shortenedheade_CP002687_002802;associated_TE_type=MITE/DTM
+271171	CP002687	HelixerPost	gene	13224423	13227816	.	+	.	ID=a_thaliana_shortenedheade_CP002687_001306;associated_TE_type=MITE/DTC
+293434	CP002687	HelixerPost	gene	13620778	13631357	.	-	.	ID=a_thaliana_shortenedheade_CP002687_002736;associated_TE_type=LTR/Copia
+274498	CP002687	HelixerPost	gene	14685537	14686988	.	+	.	ID=a_thaliana_shortenedheade_CP002687_001524;associated_TE_type=MITE/DTM
+276049	CP002687	HelixerPost	gene	15441045	15443895	.	+	.	ID=a_thaliana_shortenedheade_CP002687_001616;associated_TE_type=DNA/Helitron
+105731	CP002684	HelixerPost	gene	1375759	1379218	.	-	.	ID=a_thaliana_shortenedheade_CP002684_006931;associated_TE_type=DNA/DTM
+100439	CP002684	HelixerPost	gene	3497122	3499481	.	-	.	ID=a_thaliana_shortenedheade_CP002684_006600;associated_TE_type=DNA/Helitron
+10618	CP002684	HelixerPost	gene	4567883	4569592	.	+	.	ID=a_thaliana_shortenedheade_CP002684_000660;associated_TE_type=DNA/DTM
+89703	CP002684	HelixerPost	gene	8372800	8376560	.	-	.	ID=a_thaliana_shortenedheade_CP002684_005902;associated_TE_type=DNA/Helitron
+19339	CP002684	HelixerPost	gene	8662002	8662906	.	+	.	ID=a_thaliana_shortenedheade_CP002684_001253;associated_TE_type=MITE/DTM
+21764	CP002684	HelixerPost	gene	9763341	9768084	.	+	.	ID=a_thaliana_shortenedheade_CP002684_001418;associated_TE_type=DNA/DTM
+79995	CP002684	HelixerPost	gene	17332279	17334339	.	-	.	ID=a_thaliana_shortenedheade_CP002684_005243;associated_TE_type=DNA/Helitron
+78742	CP002684	HelixerPost	gene	18011014	18020354	.	-	.	ID=a_thaliana_shortenedheade_CP002684_005162;associated_TE_type=DNA/DTM
+30998	CP002684	HelixerPost	gene	18504812	18505592	.	+	.	ID=a_thaliana_shortenedheade_CP002684_002041;associated_TE_type=MITE/DTM
+75656	CP002684	HelixerPost	gene	19531087	19536090	.	-	.	ID=a_thaliana_shortenedheade_CP002684_004975;associated_TE_type=DNA/DTM
+71950	CP002684	HelixerPost	gene	21244286	21250121	.	-	.	ID=a_thaliana_shortenedheade_CP002684_004737;associated_TE_type=LTR/Copia
+36542	CP002684	HelixerPost	gene	21345494	21353739	.	+	.	ID=a_thaliana_shortenedheade_CP002684_002397;associated_TE_type=LTR/Copia
+56121	CP002684	HelixerPost	gene	29167654	29173036	.	-	.	ID=a_thaliana_shortenedheade_CP002684_003722;associated_TE_type=DNA/DTC
--- a/runs/association_gff/inside/b_gravinae_unkown_te_gene_associaton.gff3
+++ b/runs/association_gff/inside/b_gravinae_unkown_te_gene_associaton.gff3
--- a/runs/association_gff/inside/b_oleracea_te_gene_associaton.gff3
+++ b/runs/association_gff/inside/b_oleracea_te_gene_associaton.gff3
--- a/runs/association_gff/inside/b_tournefortii_te_gene_associaton.gff3
+++ b/runs/association_gff/inside/b_tournefortii_te_gene_associaton.gff3
--- a/runs/association_gff/inside/c_annua_te_gene_associaton.gff3
+++ b/runs/association_gff/inside/c_annua_te_gene_associaton.gff3
--- a/runs/association_gff/inside/c_gynandra_te_gene_associaton.gff3
+++ b/runs/association_gff/inside/c_gynandra_te_gene_associaton.gff3
--- a/runs/association_gff/inside/d_erucoides_te_gene_associaton.gff3
+++ b/runs/association_gff/inside/d_erucoides_te_gene_associaton.gff3
--- a/runs/association_gff/inside/d_tenuifolia_te_gene_associaton.gff3
+++ b/runs/association_gff/inside/d_tenuifolia_te_gene_associaton.gff3
--- a/runs/association_gff/inside/d_viminea_te_gene_associaton.gff3
+++ b/runs/association_gff/inside/d_viminea_te_gene_associaton.gff3
--- a/runs/association_gff/inside/h_incana1_te_gene_associaton.gff3
+++ b/runs/association_gff/inside/h_incana1_te_gene_associaton.gff3
--- a/runs/association_gff/inside/h_incana3_te_gene_associaton.gff3
+++ b/runs/association_gff/inside/h_incana3_te_gene_associaton.gff3
No results found