update pca

b671b074 · bvenn · 9db0d97d · b671b074 · b671b074 · b671b074
Commit b671b074 authored 1 year ago by bvenn
--- a/runs/03_PCA/PCA_aggregated_normed.html
+++ b/runs/03_PCA/PCA_aggregated_normed.html
--- a/runs/03_PCA/PCA_aggregated_normed_noAnnotation.html
+++ b/runs/03_PCA/PCA_aggregated_normed_noAnnotation.html
--- a/runs/03_PCA/PCA_aggregated_raw_noAnnotation.html
+++ b/runs/03_PCA/PCA_aggregated_raw_noAnnotation.html
--- a/runs/03_PCA/PCA_allsamples_normed.html
+++ b/runs/03_PCA/PCA_allsamples_normed.html
--- a/runs/03_PCA/PCA_allsamples_normed_noAnnotation.html
+++ b/runs/03_PCA/PCA_allsamples_normed_noAnnotation.html
--- a/runs/03_PCA/PCA_allsamples_raw.html
+++ b/runs/03_PCA/PCA_allsamples_raw.html
--- a/runs/03_PCA/PCA_allsamples_raw_noAnnotation.html
+++ b/runs/03_PCA/PCA_allsamples_raw_noAnnotation.html
--- a/runs/03_PCA/README.md
+++ b/runs/03_PCA/README.md
@@ -6,36 +6,5 @@ Note:

  - TAP35 and TAP40 samples were taken at more time points than nopump samples. 1, 5, 6, 7, and 9 correspond to the same timepoints as measured in nopump samples.
  - TAP25 samples were taken at less time points than nopump samples. 1, 5, and 9 correspond to timepoints preheat, 2h, and 24h.
-
-|sample names|medium|temperature|description|
-|--|--|--|--|
-|25°C - 25°C3       |nopump|25|triplicates of preheatsample|
-|25°C_2h - 25°C_2h3 |nopump|25|triplicates of 2h sample|
-|25°C_4h - 25°C_2h3 |nopump|25|triplicates of 4h sample|
-|25°C_8h - 25°C_2h3 |nopump|25|triplicates of 8h sample|
-|25°C_24h - 25°C_2h3|nopump|25|triplicates of 24h sample|
-|35°C - 35°C3       |nopump|35|triplicates of preheatsample|
-|35°C_2h - 35°C_2h3 |nopump|35|triplicates of 2h sample|
-|35°C_4h - 35°C_2h3 |nopump|35|triplicates of 4h sample|
-|35°C_8h - 35°C_2h3 |nopump|35|triplicates of 8h sample|
-|35°C_24h - 35°C_2h3|nopump|35|triplicates of 24h sample|
-|40°C - 40°C3       |nopump|40|triplicates of preheatsample|
-|40°C_2h - 40°C_2h3 |nopump|40|triplicates of 2h sample|
-|40°C_4h - 40°C_2h3 |nopump|40|triplicates of 4h sample|
-|40°C_8h - 40°C_2h3 |nopump|40|triplicates of 8h sample|
-|40°C_24h - 40°C_2h3|nopump|40|triplicates of 24h sample|
-| - | - | - | - |
-|A_1_25C - C_1_25C|TAP|25|triplicates of preheatsample|
-|A_5_25C - C_5_25C|TAP|25|triplicates of 2h sample|
-|A_9_25C - C_9_25C|TAP|25|triplicates of 24h sample|
-|A_1_35C - C_1_35C|TAP|35|triplicates of preheatsample|
-|A_5_35C - C_5_35C|TAP|35|triplicates of 2h sample|
-|A_6_35C - C_6_35C|TAP|35|triplicates of 4h sample|
-|A_7_35C - C_7_35C|TAP|35|triplicates of 8h sample|
-|A_9_35C - C_9_35C|TAP|35|triplicates of 24h sample|
-|A_1_40C - C_1_40C|TAP|40|triplicates of preheatsample|
-|A_5_40C - C_5_40C|TAP|40|triplicates of 2h sample|
-|A_6_40C - C_6_40C|TAP|40|triplicates of 4h sample|
-|A_7_40C - C_7_40C|TAP|40|triplicates of 8h sample|
-|A_9_40C - C_9_40C|TAP|40|triplicates of 24h sample|
-
+  - **dot**: acetate depleting samples
+  - **circle**: constant acetate samples
--- a/workflows/RuAnalysis_complete_5.zip
+++ b/workflows/RuAnalysis_complete_5.zip