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PCA_aggregated_normed.html
PCA_aggregated_normed_noAnnotation.html
PCA_aggregated_raw_noAnnotation.html
PCA_allsamples_normed.html
PCA_allsamples_normed_noAnnotation.html
PCA_allsamples_raw.html
PCA_allsamples_raw_noAnnotation.html
README.md
README.md

Sample annotation

PCA and heatmaps withing inc_TAP25 contain plots that include samples from TAP 25°C for time points preheat, 2h, and 24h.

Note:

  • TAP35 and TAP40 samples were taken at more time points than nopump samples. 1, 5, 6, 7, and 9 correspond to the same timepoints as measured in nopump samples.
  • TAP25 samples were taken at less time points than nopump samples. 1, 5, and 9 correspond to timepoints preheat, 2h, and 24h.
sample names medium temperature description
25°C - 25°C3 nopump 25 triplicates of preheatsample
25°C_2h - 25°C_2h3 nopump 25 triplicates of 2h sample
25°C_4h - 25°C_2h3 nopump 25 triplicates of 4h sample
25°C_8h - 25°C_2h3 nopump 25 triplicates of 8h sample
25°C_24h - 25°C_2h3 nopump 25 triplicates of 24h sample
35°C - 35°C3 nopump 35 triplicates of preheatsample
35°C_2h - 35°C_2h3 nopump 35 triplicates of 2h sample
35°C_4h - 35°C_2h3 nopump 35 triplicates of 4h sample
35°C_8h - 35°C_2h3 nopump 35 triplicates of 8h sample
35°C_24h - 35°C_2h3 nopump 35 triplicates of 24h sample
40°C - 40°C3 nopump 40 triplicates of preheatsample
40°C_2h - 40°C_2h3 nopump 40 triplicates of 2h sample
40°C_4h - 40°C_2h3 nopump 40 triplicates of 4h sample
40°C_8h - 40°C_2h3 nopump 40 triplicates of 8h sample
40°C_24h - 40°C_2h3 nopump 40 triplicates of 24h sample
- - - -
A_1_25C - C_1_25C TAP 25 triplicates of preheatsample
A_5_25C - C_5_25C TAP 25 triplicates of 2h sample
A_9_25C - C_9_25C TAP 25 triplicates of 24h sample
A_1_35C - C_1_35C TAP 35 triplicates of preheatsample
A_5_35C - C_5_35C TAP 35 triplicates of 2h sample
A_6_35C - C_6_35C TAP 35 triplicates of 4h sample
A_7_35C - C_7_35C TAP 35 triplicates of 8h sample
A_9_35C - C_9_35C TAP 35 triplicates of 24h sample
A_1_40C - C_1_40C TAP 40 triplicates of preheatsample
A_5_40C - C_5_40C TAP 40 triplicates of 2h sample
A_6_40C - C_6_40C TAP 40 triplicates of 4h sample
A_7_40C - C_7_40C TAP 40 triplicates of 8h sample
A_9_40C - C_9_40C TAP 40 triplicates of 24h sample