BEASTworkflow.txt

Input: amino acid sequences aligned with M-coffee 
BEAST version 2.7.3
BEAUTi settings:
   Gamma Site Model, Substitution Model Blosum62
   Strict Clock - mean clock rate 1.0
   Prior Yule model, uniform (0,0,infinity), initial [1.0][0.0,infinite]
   MCMC chain length 1e6, store every 1e4, no pre Burnin, num init attempts 10
Tracer v1.7.2:
   validate ESS > 200
TreeAnnotator:
   maximum clade credibility tree
   burnIn 50%
   posterior probability limit 0.5 (median node heights)
FigTree v1.4.4:
   visualisation of generated dendrograms
     - display tip labels, node labels (posterior)