.gitattributes

@@ -3,4 +3,5 @@ assays/rnaseq/dataset/DH_RNA_Nodules_S19_R1_001.fastq.gz filter=lfs diff=lfs mer
 *.xlsx diff=ssdiff merge=binary
 **/dataset/**/* filter=lfs diff=lfs merge=lfs -text
 *.fq.gz filter=lfs diff=lfs merge=lfs -text
-
+**/dataset/** filter=lfs diff=lfs merge=lfs -text
+runs/ppl14025-sup-0002-table.xlsx filter=lfs diff=lfs merge=lfs -text

assays/rnaseq/protocols/SeqDataDeliveryNote_Abbreviation.txt

+Sequence Data Delivery Note
+VProject VB2275 
+15.10.2022
+The NGS libraries (2 samples) were single-read sequenced on an Illumina NextSeq 500 system using 75 bp read length.
+
+Summary of sequencing Run:
+Total Reads 	130.024.459
+Cluster(PF) 	116.060.162
+% Cluster 	89,3
+Reads ident. 	107.465.709
+% Index 	92,6
+
+Sample ID Sample Name Barcode i5 Barcode i7 Number of Reads
+1 DH_RNA_Nodules CAAGTGGG TCCGCGAA DH_RNA_Nodules_S19_R1_001.fastq.gz 54.042.636
+2 DH_RNA_Control AGATTTGG TCCGCGAA DH_RNA_Control_S20_R1_001.fastq.gz 53.423.073
+
+The NGS library pool was analysed on a Shimadzu MultiNA microchip electrophoresis system.
+

runs/BEAST/alignment_files/g31563_select.fasta

+>4J7R_A_Crystal_Structure_of_Chlamydomonas_reinhardtii_Isoamylase_1_(ISA1)_Chlamydomonas_reinhardtii                  
+---MGS---S------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------------------------------HH---------------------------------------------------------------
+---HHHHS----------------------S---G-----------LVPRG-----------S-----------------HMVELE--------------
+-A-----------------------------------PTLS--SSP--------ATVSTKKLF---------------------CEPSGQPASTA-----
+YGPALTG----RPAPLGASIDAD-T--------------------------G-AINFSVF-SSSAESVSLVLF----TEADLNA----------------
+--------------------------------------------------GRATFEIPLDPYVNRTGDVWH-IMLPD-LR-------------DD-LL--
+YGY-RVEGVHQE-----EDKDYPGMRH--DKRRVVLDPYAVA------------------------------V-LNRRRWG------Q-----MGPNLPY
+GEEGVLGV-MPTW-------------------------------PQAAAA-LP----------AARGSA-----FDW---EGD--TPL--NL--PMESLV
+IYEAHVRGFTAHASSGV-------AAPGTYAGMVE-RLDYLKSLGVNAIELLPVFEFNELEYYSQIPGSDQYRFNFW--GYSTVNYFSPMGRFSAAVGQG
+APARASCDEFKQLVKECHRRGIEVILDVVFNHTAEGN--ERGP-TISF-R---GLDN-----RVYYMLAPG----------G-EYY--N--------YS-
+----GCG---NTLNCNQPVVRQFILDCLKHWVTEYHVDGFRFDLASILTRAHSAWHPQQYDQETGQRVAMSSGGAIVTAEGIMTDGAG-----VPTGYPL
+ADPPLVE-SISEDPVLRNTKMIAEAW-DCDG-LNQVGAFPHYGGRWSEWNG---KFRDVVRNFIKGTD-----GPWAGDFASAICGSPN----------I
+YANNTPHETDWWANNGGRQWKGGRGPHA----SINFVAAHDG-----FTLADMVAYNNKHNEANGENN----RDGEQHNNSWNCGE---EG--PTTKW--
+-EVNRLRQRQMRNL-TGALLLSCGVPMINMGDEYGHSKNGNNNTYCHDS-----------ELN--YLRWDQLAE--D---PHGFNRFVRLLIHFRR----
+-------------------ATPALQRTTFVNDKDIQWHGELPNTPDWT-DTSRLVAFTLHDG--------------------------------------
+--------------------KGGGLYVAFNTSHLPKLLQLPKW-G-GRVWQPLVDTSKVAPYD---FLA--------VDG--------VLSAEDVAAARR
+QMAMWTADHTYPVLPWSCIVLQSAPEDPAATS-MI-----------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------------------------------------------K----------------------------------------------------
+----------------------------------
+>AAP85534.1_isoamylase_Chlamydomonas_reinhardtii                                                                      
+MLLQAP---G------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------------------------------LAPG------------------------------------------------------------S
+ARRQAACSVAR----------EATNVRIVTAPALTPGRAGVSGRRILPPSR-----------V-----------------VSVELE--------------
+-A-----------------------------------PTLS--SSP--------ATVSTKKLF---------------------CEPSGQPASTA-----
+YGPALTG----RPAPLGASIDAD-T--------------------------G-AINFSVF-SSSAESVSLVLF----TEADLNA----------------
+--------------------------------------------------GRATFEIPLDPYVNRTGDVWH-IMLPD-LR-------------DD-LL--
+YGY-RVEGVHQE-----EDKDYPGMRH--DKRRVVLDPYAVA------------------------------V-LNRRRWG------Q-----MGPNLPY
+GEEGVLGV-MPTW-------------------------------PQAAAA-LP----------AARGSA-----FDW---EGD--TPL--NL--PMESLV
+IYEAHVRGFTAHASSGV-------AAPGTYAGMVE-RLDYLKSLGVNAIELLPVFEFNELEYYSQIPGSDQYRFNFW--GYSTVNYFSPMGRFSAAVGQG
+APARASCDEFKQLVKECHRRGIEVILDVVFNHTAEGN--ERGP-TISF-R---GLDN-----RVYYMLAPG----------G-EYY--N--------YS-
+----GCG---NTLNCNQPVVRQFILDCLKHWVTEYHVDGFRFDLASILTRAHSAWHPQQYDQETGQRVAMSSGGAIVTAEGIMTDGAG-----VPTGYPL
+ADPPLVE-SISEDPVLRNTKMIAEAW-DCDG-LNQVGAFPHYGGRWSEWNG---KFRDVVRNFIKGTD-----GPWAGDFASAICGSPN----------I
+YANNTPHETDWWANNGGRQWKGGRGPHA----SINFVAAHDG-----FTLADMVAYNNKHNEANGENN----RDGEQHNNSWNCGE---EG--PTTKW--
+-EVNRLRQRQMRNL-TGALLLSCGVPMINMGDEYGHSKNGNNNTYCHDS-----------ELN--YLRWDQLAE--D---PHGFNRFVRLLIHFRR----
+-------------------ATPALQRTTFVNDKDIQWHGELPNTPDWT-DTSRLVAFTLHDG--------------------------------------
+--------------------KGGGLYVAFNTSHLPKLLQLPKW-G-GRVWQPLVDTSKVAPYD---FLA--------VDG--------VLSAEDVAAARR
+QMAMWTADHTYPVLPWSCIVLQSAPEDPAATS-MI-----------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------------------------------------------K----------------------------------------------------
+----------------------------------
+>AAU01394.1_putative_1_4-alpha-glucan_branching_enzyme_2_Toxoplasma_gondii                                            
+---MLG---GLPSPSRPRVVSGGLAVSSGAANSD-----------------CRPVERGPSPSTEGKETRGQREDTDDEEAVALAC---HKGSLFSQEERG
+LSLPLSPVEEESGGDSGS-----EFKREEVSPSLHREPGERVAPGKEEREEEHGDPSAEV----------------------------------------
+PSSAEHKMPSTVFQSKGGLPGFFAALLGGKEADGAAGPP----------------------------------------------------------PRP
+PEAPVSPF--R----------PQGDGETESHESAVSAGPSASSSSSSLSSSS-----------FSSSSCTALKTRG----------------------S-
+-------------------------------SEEE---GWE--TRVEARGVRTRNEAQEGGPQ-SVSHGLERSEENALEA----RETQELEETESR----
+QLLRDHGGKMGA-C---VLRD-SD---------------------------EDLCLFRLW-GPHVDRCWVQLN----P-----------TK---------
+--------------AG-ES-----------------------PRRFELK---------------NEGNALWGTVLRG-VP-------------S--R-HF
+RCP-L------------SI--P--SLG--YS-G---DPYAR------------------------------HT-DF---F--------------SNTCYV
+-TDASRFPWKHLQ---------------SFDP-----------------------------------------------------------P--TWNKLI
+IYELHPGTFSPAS-----------ADRTVFETLVD-KLDHIRSLNFNAVEFLPVQEFGG----------------EW--GYNPRLLLATHGKY----GTP
+-------DQLRKLVDECHRKGLAVIFDLVLNHGSAKL--NS-LW--NW-DGYGKDAS-----GGIYFEG----------GGE-------SG---------
+----W-G---RKFSFHKREVRDMILAAALCFIEEYGADGLRLDSVHSMPWDL------------------------------------------------
+--------LQELT------HAVRSKHPSKIL-IAEV--------------T---PENPQICN-----SAGFDSCWIHSAYYDA-I-KVTRGQDGNHH---
+----------------------------LDMLRAMIDVH---RGFRMSH--QGVNSLLGSHDQAGNKQGGHTDGR-----------AG---RYFVDLF-G
+GRNNWHSRAQCRMW-YSLQAVCRGLPMMFMGTETHQDKWWNVDEQH--------------K-----MNWNFVENHDPL--AEQMMNLVAAANKLRLSFPS
+LTDDHAPVRFCHL----------------------DYQNRV-------------LGFVRGS-------------------------------------LL
+VVLNCS-ESQWEGRDYEVQ--------------------TDC--VNR-KFKQVFNSQAA----EFGGWEASWSSADRN------------LSSSVH----
+------ARLPVNLPKWSVTVYE-RQE--------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------
+>ACY56095.1_isoamylase_Oryza_sativa_Indica_Group                                                                      
+---MAS---L------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------------------------------PHCL----------------------------------------------------------SAR
+PLVVAAAPG------------RPGPGPGPWLRGGARRRNAAFSAGNAGRRV-----------G------------------LRRSV--------------
+-A-----------------------------------SAVE--VGVGEDEE-GVEEEEEEVEA---------------------VVMPERYALGG-----
+ACRVLAG----MPAPLGATALDG------------------------------GVNFAVY-SAGASAASLCLF----TPDDLEA----------------
+--------------------------------------------------DEVTEEVPLDPLFNRTGNVWH-VFIEG-EL-------------HN-ML--
+YGY-RFDGMFAP-----HC----GQYF--DVSNVVVDPYAKA------------------------------V-ISRGEYG------V-----PGPG---
+---------GDCW-------------------------------PQMAGM-IP----------LP-YST-----FDW---QGD--LPL--RY--PQKDLV
+IYEMHLRGFTKHSSSNV-------EHPGTYIGAIS-KLDYLKELGVNCVELMPCHEFNELEYFSCS-----SKMNFW--GYSTINFFSPMIRYSSG-GIR
+NCGRDAINEFKTFVREAHKRGIEVIMDVVFNHTAEGN--EKGP-ILSF-R---GIDN-----STYYMLAPK----------G-EFY--N--------YS-
+----GCG---NTFNCNHPVVREFIVDCLRYWVTEMHVDGFRFDLASIMTRGCSLWD-----------------PVNVYGS--PVEGDM-----TTTGTPL
+ATPPLID-MISNDPILGDVKLIAEAW-DAGG-LYQVGQFPHWK-IWSEWNG---KYRDIVRQFIKGTD-----GF-AGGFAECLCGSPH----------L
+YQA------------------GGRKPWH----SINFVCAHDG-----FTLADLVTYNKKYNSSNGEDN----RDGENHNLSWNCGE---EG--EFAGL--
+-SVKRLRKRQMRNF-FVSLMVSQGVPMFYMGDEYGHTKGGNNNTYCHDH-----------YVN--YFRWDKK-E--E---SSDLQRFCSLMTKFRK----
+-------------------QCESLGLADFPTAQRLHWHGHQPGKPDWS-ETSRFVAFSTKDE--------------------------------------
+--------------------TKGEIYVAFNASHLPAVVGLPER-P-GYRWEPLVDTGKPAPYD---FLT--------DD----------LPDRAH--AVH
+LFSHFLNSNLYPMLSYSSIILELQPD--------------------------------------------------------------------------
+-------------------------------------------D--------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------
+>BAA01617.1_1_4-alpha-glucan_branching_enzyme_partial_Oryza_sativa_Japonica_Group                                     
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------------------------------------------------------------------------------TGYFAPTLRY----GSP
+-------DDLKYFIDRCHAANIGVILDWVPGTFPKDD--WALAR--FF-DG----TA-----LY-EHADPRL-------GEH-------MD---------
+----WGT---YIFYYGRNEVRSFLLSNAYYWLREFHIDGLRVDAVASMLYLDY-SR-------------------KDGE-WL-----P-----NAYGGRE
+NLDVIEF-LKQLN------VMVGERFPGVLT-IAEE--------------S---TAWPAVSRPVYAGGL-------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------
+>CBr_g31563_1_4-alpha-glucan-branching_protein                                                                        
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-------------------------------MYSQLC---------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------TPGLG-----------------------------
+AILDGQGG----------------------------------------------CVFRVW-APNAEAAFIALH----D------------E---------
+--------------AS-SV-----------------DGQEGTVKMIAME---------------KQGAFW-AQRVRN-VR-------------AG-D-KY
+HYVFR------------HQ--G--VDY--HR-R---DARAR------------------------------HT-DF---N--------------SDACII
+-TDPT----YEWY---------------PFQT--------------------------------------------------------------PAFEEM
+IIYQLHVGAFTGR-----------DGAGSFMEAEG-KLDHIKGMGFNTIQLMPVHEFSG----------------EW--GYNPRLLCAIHQKY----GTP
+-------EQLRHFVNECHIRGIAVIFEVVLNHMATNL--NS-LW--AY-DGLNTEDD-----GGLYFDR----------AFD-------TG---------
+----S-S---RGFAYEEREVREMISDAVRMFLSEYKADGLRIHAVHNTPREV------------------------------------------------
+--------LEDMT------STMHEEFPGKIL-ISDV--------------T---PENPKIVS-----RTGFDSTVIHSTYFDM-R-KHMRGD---LD---
+----------------------------GRKLEKAIGLH---YGFTKPT--QCIKHFLGAHDHIGDRNDGMFDAA-----------IDGFHRYAVDLF-G
+GRAKWEANAAARAW-YMVMTMSAGIPLLFMGTEFSQDGWWGVQPDE--------------C-----VNWEKAE--DDT--GKTMMKLVKAANEFRRESPA
+VLH--GTVDVVHY----------------------DENHGI-------------IGFWRKSE---------------------------------KEWLF
+VVANLS-SYQWSEEEYEVR--------------------VGNCGTGH-KFIEVFNSQDA----QYGGWEGSGNAGKKL------------KG--NG----
+------RRISINLPQWSVLIFE-PTD--------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------
+>EFJ37770.1_hypothetical_protein_SELMODRAFT_437348_Selaginella_moellendorffii                                         
+---MAW---SV--------------------TQA------------------------------------------------------------------
+-------------------------------------------PAGRASCICPRGIGGSG----------------------------------------
+GIGAAASSSQALRSS-ARRRKRVALCCGSPLLGRALSLS----------------------------------------------------------CHV
+HGKHYSRP--S----------TRVSCADPVSPAESTAASTATASKDLLEP-S-----------KADHSMEEQTMEIA-KQIQAFRDGSLKLKEQD-----
+------------------------------AALPKVVPPPG--DGQRIYEIDPYLKNYRDHLE---------------------YRYSQYKAKVD-----
+AINKHEG----GLEAFSRGYE-KFGF---------------------NRTAA-GITYREW-APAAKSASLMGD---------------FNN---------
+--------------WN-P------------------------NADMMKK---------------NEYGVWE-LFLPNNADGS-----------AA-IP--
+HGS-RVKIH--M-----ET--A--SGV-KDA-I---PAWIK------------------------------FAVQA------------------------
+-------------PGE-------I-PYN------------------GI-Y-Y----------DPPPEER-----YEF---K----HPR--PK--RPNSLR
+VYEAHVGMSSTEP------------KVNSYSAFRDDVLPRIKGLGYNAVQLMAVMEHAYYG--------------SF--GYHITNFFAVSSRC----GTP
+-------DELKSLIDKAHELGLFVLMDVVHSHCSNNV--LDGLN--MF-DG----TD-----SQYFHSGAR--------GYH-------WM---------
+----WDS---RLFDYSSWEVLRFLLSNLRWWMEEYKFDGFRFDGITSMMYTHHGLQ------------------MTFTG-QY-----S-----EYFGMTT
+DVDAVVY-LMLAN------DLLHALYPQTIT-VAED--------------V---SGMPTLCIPVADGGIGFD-YRLQMAIADKWI-DILE---------K
+LK---------------------DEEWN----MGNIVFT---L-TNRRWMEKCISYAESHDQALVGDKT--LAFW-----LMDKDM---YDHMALDRPST
+PRIDRGIALHKMIR-LITMALGGEGYLNFMGNEFGHPEWIDFPRSDQKLPNGKFVPGNKNSFDKCRRRFDLGDA--DYLRYRGLQEFDRAMQQLEAKYEF
+MVA--PHEYVSRK----------------------NEGDKI-------------IVFEKGD-------------------------------------LV
+FVFNFH--WQKSYTDYRV----------------------GCLK-PG-NYKVVLDTDER----LFGGFGRLDHSAVFHTN--------EGWYDDRP----
+------QSFQVYSPCRTAVVYA-PGLSQRVAMADSSWDDAALITAFNSAVGKYQERHSSKESDGKSSHQE-KIESASQQDQAAAEGSSQHADSSFVDPSS
+YYPYPYPQPHPSYPYPAFVYPVPAYACAPPPSHCCHHSCCHSSSTQSSRSDDPSFETLKLAILQSLSQLPPDKQLSLEDNAEVLIAWFNAGFRTARSPSR
+VVPISLFLIYWAERWLDQGFLPRTSESKKEAFRKYLEASGVLDSLTKVLVALYEENDKPPLAIDFIQHNLGGYTNEEYTKLKGERDELQLKYNELVAAHE
+ELGRKFEE-LQLQLPPP-E---EAPPVEGAPP-A
+>GAQ78433.1_alpha-amylase_Klebsormidium_nitens                                                                        
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------MGGVES
+SPGGAEDG----QSGHKEVER-GE--------------------------------G-----------LTKHP----P----SPD---K---PKVQLTHE
+-----------------------------------------------------------------KPSVED-SVAAK-IV-------------EQG----
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-EEILIQGFNWES----------HH-RNWYQTLLE-KVPELKAAGFTGIWLPPASDSLA----------------PQ--GYLPKDLYCLNSAY----GSS
+-------DQLRHLLRTLKAAGIRPIADIVINHRIGSAQGNGGQW-NRY-E---------GMRMAWDETAVTSD--SYGGLGNPGTG--E--------TF-
+----EGA---PNIDHSQEHVQQDITEWLRWLKDDVGFSGFRFDYAKGYSPDF-V-K-------------------KYIE-AVR-PDFA----VGEYW---
+--D--ACSY--------------GPEPESVL-EANQ--------------E---EHRQRIVDWIDGTG-----G-LASAFDFTTKGVLQ----------E
+AVS-------------------KSEYWR----LKDDQGRPPGV-I-GLWPARAVSFVENHDTGSTQN---------------------------HWPF--
+-----P-KDEVLQG-YAYILTHPGVPTVFYDHYFEWGGE--------------------------------------------MKAALSRLIQIRRQQHI
+TSQ--STVHILE-------------------------AA-S------------VYVAEVDD-------------------------------------CT
+L-MKLG-KEDWAPPD-------------------------NQ------KWC-WVHSGR--NYS---IWT-------------------------------
+-----------------------REKKPP-----------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------
+>GAQ80182.1_isoamylase_Klebsormidium_nitens                                                                           
+---MQ-----------------------------------------------------------------------------------------------
+-------------------------------------RQCTGRDTASARSKSSPAVHALKKDGNT-----------------------------------
+-------FVYHINGGGRVLASVRKE-ARRFMVTLEVNTK----------------------------------------------------------ELE
+IDSATPLHL------------HWGLSRSDSEDWVLLDAKSAPPNTT-LSGG-----------ETEAMRTPILESRPGVRRIEIALD--------------
+-A-----------------------------------RKAP--VELHFVLYQPPTEKVPE-KW---------------------FRSTKESNFSV-----
+PVGLGRG----SPDPLGATWQSN----------------------------G-SVNFALY-SRNAEGVILCLF----KPGAVEP----------------
+-----------------------------------------------------STELDLSPGLHRTGDVWH-AQLES-VE-------------GY-DR--
+YGY-RVRGAVGW-----AT----GNRF--HSRPVLLDPYAHF------------------------------I-APH----------V-----PGQE---
+---------DLPS-------------------------------PALALG-LL----------QP-EEP-----FDW---EGD--YPP--LV--PMEELI
+AYKLHVGGFTRDASSGV-----ADAARGTFLGVVE-KVQHLVDMGVNAVILQPIAAFDETL---------------G--SFFPISFFAPASIYGPG----
+GSGVAASRSLKLLVKELHRAGIEVLLDVVYSHTAEGN--DEDPKTVSL-R---GIDN-----ATYYLVDEF--------GQF-KI---P--------EF-
+----GVG---NAFNCNHPTVQRMIVDSIRRWVEEFHVDGFCFANAGALVTG-------------------------------------------PHGQQL
+SRPLLVE-ALAFDPVLADIKLIADLRSPITG-VHQPVDFPHWS-RWAEWNS---RYRDDVRRFIRGEG-----GQ-LSSFATRLVGSGD----------I
+FDD-------------------RRGPGF----SFNHVTSPYG-----YTLADVVSYTGYPNDF-----------RCQNEFGWNAGV---EG--QVADP--
+-GVTDARQRQMRTY-LVALFLSQGVPVLTMGDEYGHTKNGNLDVE---D-----------RNS--VFHWGQMEG--PL--GSQLKELIARLVAFREE---
+-------------------HPELLQRREYLLPHELVWHGYWPAHPEWDNPSSAFLAASLHQYVPVEEPEPDSEYEPEPELEAPERAPFSVPGVSLEAP-S
+GAGEDL-PEAVDPLAGLEPVGHGDLYIAFNAHGDQVTLGLPAP-PRGAVWHRLADTSMPVQSY---FVG--------EG----------EALHAP--PPG
+APDVVHPHGSYDLAPFSALLLEAKFPKGADGV-RR-----------------------------------------------------------------
+-------------------------------------------P------------S-------------YEMQT-------------------------
+---------------------------------NKAAPFAVSLSGF------------------------------------------------------
+----------------------------------
+>GAQ89829.1_Malto-oligosyl_trehalose_hydrolase_Klebsormidium_nitens                                                   
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-------------------------------MIPLGP---------------------------------------------------------------
+---------------------------------------SWLGLLTKVEGSE-----------YDGKLVTVVP---------------------------
+----------------------------------K---AVA--TGVDVIDRTSAAALTDEQIL-DSTPGLG-----------------------------
+AILDAEGG----------------------------------------------CVFRVW-APEAQYAELVVL----G-----------PN---------
+--------------TP-DD-----------------------DNVLGMR---------------WEGGNF-AVRAPG-VR-------------AG-A-KY
+YFIFH------------HN--G--EKF--YR-R---DARAR------------------------------YT-DF---D--------------GCACYV
+-VDPS----YDWA---------------PFEA-----------------------------------------------------------P--TWDKLI
+LYQVHVGAFTGRE-----------EGGGTFNALAA-KVDYIKSLGFNAIQLMPVTEFGG----------------LW--GYNPRLLTSTHQAF----GTP
+-------AELQSLVDTCHKAGIAVIFDVVLNHGAARL--NS-LW--AY-DGWNPNNG-----GGIYHHG----------AGK-------TP---------
+----W-G---KKFAFGRWEVDDYILEGAEIFLRDFNGDGLRFDSVHNMPWQL------------------------------------------------
+--------LQRMT------WTLHDKYPGKIL-ISEI--------------T---PEDSAAVS-----SAGFDATWIHSTFFET-R-KYMEGD---RA---
+----------------------------LGKVQHVLGLG---SGFSKPT--QMLKYVMGCHDQIGCRNNGAFCHD-----------IGGLHRYPVDHY-G
+GRNKWGARAIARMW-YAAMIAASGIPMAFMGTECHHDGWWHVEQNR--------------C-----FNWWFAG--DPL--GQEMMRLVTSANTLRTQSHA
+LGA--GGFDTVHF----------------------DDHHKV-------------LGFRRESN---------------------------------DQTLL
+VIVNAG-GNQWENSDYGVG--------------------VGDRGIGR-RYVERFNSQDA----SFGGWEGSGNAGRDL------------HE--HG----
+------GRIYINVPKWSTLIFE-VL---------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------
+>KAF2951986.1_hypothetical_protein_DAI22_01g302500_Oryza_sativa_Japonica_Group                                        
+---M----------------------------------------------------------------------------A---VAS-------------
+------------------WSIPAIPRAGPT---ARGVLLGGAFVTAARPPVAWRCRATLP----------------------------------------
+RRVRLGGVVARAGAAETPVAGSGEAGLLFSEKFPLRRSRTVE--GKAWVRVDAEPDGEGKCKVVIGCDVEGKWVLHWGVSYDGEQGREWDQPPSDMRPPG
+SVPIKDYA--IETSLDTPHNSEGKTIHE----------VQIKIDKGTSIAAI-----------NFVLKEEET------------GAWFQHKGQDFRIPLS
+G--------------------------------SF---GGD--LLGTEQDIDVRPGALGHLSNVLQKPEGPIAE-PHKT--------------VP-----
+----------------------------DDKGSRTKHIS-------------GFYEEYPILKTVYVQNFITVN----V----REN---NGTTKHAVEFDT
+DIPGEVIIHWGVCKDNTMTWEIPPEPHPPATKIFRQKALQ--TMLQQKA---------------DGTGNSL-SFLLD-GE-------------YSGLI--
+FVV-KLDEY--TWLRN---------------------VENGFDFYIPLTRADAEADKQKADDKSSQDDGLISDIRN-LVVGLSSRRGQ-----RAKNKVL
+-QEDILQEIERLA-------------------------------AEAYSI-FRSPTIDTVEESV------------Y---IDDS--SI--VKPACSGTGS
+GFEILCQGFNWES----------HKSGKWYVELGS-KAKELSSMGFTIVWSPPPTDSVS----------------PE--GYMPRDLYNLNSRY----GTM
+-------EELKEAVKRFHEAGMKVLGDAVLNHRCAQFQNQNGVW-NIF-G---------G-RLNWDDRAVVADDPHFQGRGNKSSG--D--------NF-
+----HAA---PNIDHSQEFVRSDLKEWLCWMRKEVGYDGWRLDFVRGFWGGY-V-H-------------------DYLE-ASE-PYFA----VGEYW---
+--D--SL-S-------------YT---YGEM-DYNQ--------------D---AHRQRIVDWINATN-----G-TAGAFDVTTKGILH----------S
+ALE-------------------RSEYWR----LSDEKGKPPGV-L-GWWPSRAVTFIENHDTGSTQG---------------------------HWRF--
+-----P-FGMELQG-YVYILTHPGTPAIFYDHIFSH-----------------------------------------------LQPEIAKLISIRNRQKI
+HCR--SK---------------------------------------------------------------------------------------------
+------------------------------------------------------------------VWE-------------------------------
+-----------------------VSS--------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------
+>KAH7288477.1_hypothetical_protein_KP509_31G027800_Ceratopteris_richardii                                             
+---MEL---H------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------------------------------FVSY----------------------------------------------------------PGA
+YRNNTACLG------------LPPFGSH--LVPSPKACLQQQEVMR----------------------------------RCKRRV--------------
+-S-----------------------------------VCRS--SY---------VDVSVSEN------------------------EVKAADDTL-----
+FGAPSHG----SPLPFGATMVGD------------------------------GVNFSIH-SSSATSVTLCLF----TSSDLQQ----------------
+--------------------------------------------------GQVTREIPLDPRLNRTGDVWH-ICLPN-IS-------------EE-LL--
+YGY-RMDGPFFP-----ES----GQRF--NPACILVDPYAKA------------------------------V-ISREVYG------V-----PASN---
+---------GNCW-------------------------------PQMGGM-VP----------FN-AEP-----FDW---EGD--ISP--RL--SQKDLI
+VYEMHVRGFTRHESSNV-------NYPGTYHGLVE-KLDHLKELGINAIELMPCNEYNELESYAYNAVMGGYKMNFW--GYSTLNFFSPMIRYSKS-GNS
+RCGLDAINEFKTLVREAHKRGIEVLMDVVFNHTGEGN--EMGP-TLSF-R---GVDN-----AVFYMLAPK----------G-EFY--N--------YS-
+----GCG---NTFNCNHPIVRRFIVECLRYWVIEMHIDGFRFDLATILTRSSSLWD-----------------KANVFGHTEGLEGDL-----LTTGSPL
+AEPPLID-MISNDPVLCDVKLIAEPW-DCGG-LSQVGKFPHWG-LWSEWNG---KFRDTVRQFIKGTD-----GV-VGDFANCLCGSPQ----------I
+YQD------------------GGRKPWH----SVNFTTAHDG-----FSLADLVSYNKKHNTANGEGN----RDGEDHNNSWNCGE---EG--ELVSL--
+-HVHDLRQRQMRNL-LLALFVSQGIPMMTMGDEYAHTKGGNNNTYCHDN-----------YIN--YFRWDKKET--D---INGFYRFSRLLLNFRRE---
+--------------------CDSLGMEDFLTSDRLSWHGECPNMPDWS-ETSRFVAFTLIDS--------------------------------------
+--------------------RYKELYVAFNASHLAKIVSLPLR-Q-GHKWQPLIDTSKCSPYD---FLA--------MD----------ILDKDV--AVA
+QYAHFLKSNIYPMSDYSSIVLHLVP---------------------------------------------------------------------------
+-------------------------------------------Q--------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------
+>KAH7425702.1_hypothetical_protein_KP509_11G067000_Ceratopteris_richardii                                             
+----------------------------------------------------------------------------------------------------
+-----------MQ-----RSLFKGNRCEGN---RASKTAAVEEGGKNVEEALNELVKEAD----------------------------------------
+EGLSDQKTDTDDVVALREALAAAHDRIASAENEKADALKALA--QAEAKVQEYADIVVKGTESALQEMQAAKESFHMELQHILEQKLAVESELVLAKQDA
+LELAVSVD--K----------VADYVIKETTAHIAEDAMLKMAAAKTAAAEA-----------ALTVEERIKDATLEAANSMIEETRDAIEKSFAALEAA
+K--------------------------------DK---AQK--SEIALFQKMQILDDMVLKEASALGLQQAVSN-LQRQLQAAENEIQRLETEVKATLAR
+AEAAEARA----AAADESLKQ-FQEKACQSAQEHEESAR-------------KALEALK-NAGAARLEAARSA----F----KSD---IEALQTALNTVH
+K----------AEKSQEKAYA---------------------RRYQALE---------------RALAASE-ALSIT-WK-------------ERALA--
+VEK-LLQRF--RTEGSDAA--G--GNG--GI-E---GVLTGGRMKALLGNDSRKWDLLANGPRRDTPEWMERRIEV-ALQGLPPRKHGQV--QQEADEKF
+-LLPGIEDVWCIATAK---------VK-----------------EDVYTQ-HAAEKEAIDEQRRVLEKTLS-----K---RSAR--RP--LKASESGTGS
+GYEIVLQGFNWES----------WR-KKWYLELGP-KAADISSCGITTIWFPPPTESVS----------------PQ--GYMPGDLYNLNSAY----GTE
+-------DELKNCVEEMHNHDLLVLGDVVLNHRCAQRKGPTGVW-NVF-G---------G-KLAWGPEAIVRDDPNFHGRGNPSSG--D--------FF-
+----HAA---PNIDHSQDFVRKDIVGWMKWLRTEIGFDGWRLDFVRGFWGGY-V-K-------------------EYIE-ATA-PVFA----IGEYW---
+--D--SL-A-------------YE---GGNV-CYNQ--------------D---AHRQRIVNWVNATG-----G-TSSAFDVTTKGILH----------A
+ALH--------------------NEYWR----LIDPQGKPPGV-M-GWWPSRAVTFLENHDTGSTQG---------------------------HWPF--
+-----P-RDKLMQG-YAYILTHPGTPVIFYDHFYDFG----------------------------------------------LRDAITELIAVRRRTGV
+HCR--STVKIYH-------------------------ATNQ------------GYVAQIGE-------------------------------------NL
+V-MKLG-HLDWNPSK-------------------------QNNL-EG-NWQRCLDSGA--DYQ---IWE-------------------------------
+-----------------------RN---------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------
+>NP_001324597.1_isoamylase_1_Arabidopsis_thaliana                                                                     
+---MDA---I------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------------------------------KCSS------------------------------------------------------------S
+FLHHTKLN--------------------------TLFSNHTFPKISAPNFK-----------P------------------LFRPI--------------
+-S-----------------------------------ISAK--D-----------RRSNEAEN---------------------IAVVEKPLKSD-----
+RFFISDG----LPSPFGPTVRDD------------------------------GVNFSVY-STNSVSATICLI----SLSDLRQ----------------
+--------------------------------------------------NKVTEEIQLDPSRNRTGHVWH-VFLRG-DF-------------KD-ML--
+YGY-RFDGKFSP-----EE----GHYY--DSSNILLDPYAKA------------------------------I-ISRDEFG------V-----LGPD---
+---------DNCW-------------------------------PQMACM-VP----------TR-EEE-----FDW---EGD--MHL--KL--PQKDLV
+IYEMHVRGFTRHESSKI-------EFPGTYQGVAE-KLDHLKELGINCIELMPCHEFNELEYYSYNTILGDHRVNFW--GYSTIGFFSPMIRYASA-SSN
+NFAGRAINEFKILVKEAHKRGIEVIMDVVLNHTAEGN--EKGP-IFSF-R---GVDN-----SVYYMLAPK----------G-EFY--N--------YS-
+----GCG---NTFNCNHPVVRQFILDCLRYWVTEMHVDGFRFDLGSIMSRSSSLWD-----------------AANVYGA--DVEGDL-----LTTGTPI
+SCPPVID-MISNDPILRGVKLIAEAW-DAGG-LYQVGMFPHWG-IWSEWNG---KFRDVVRQFIKGTD-----GF-SGAFAECLCGSPN----------L
+YQ-------------------GGRKPWH----SINFICAHDG-----FTLADLVTYNNKNNLANGEEN----NDGENHNYSWNCGE---EG--DFASI--
+-SVKRLRKRQMRNF-FVSLMVSQGVPMIYMGDEYGHTKGGNNNTYCHDN-----------YMN--YFRWDKKEE--A---HSDFFRFCRILIKFREY-VI
+F-FHESID-LNCLVDRF-----------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-------------------------------------------T--------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------
+>XP_002967402.2_1_4-alpha-glucan-branching_enzyme_chloroplastic/amyloplastic_isoform_X2_Selaginella_moellendorffii    
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------------------------------MADPRW-----------------------------------------------NFHRSVI-----
+------------------------------KAVKTEEHVAR--EDLPVVRVDPLLAPHQDHLK---------------------YRFSQYEGRKK-----
+AIEKYEG----GLEKFSLGFQ-KFGF---------------------NYEDG-YIVYREW-APPAQAAQLIGD---------------FNN---------
+--------------WD-G------------------------WSHPMEK---------------DKYGVWS-VRIPD-VDGK-----------PG-IP--
+HGS-RVKFR--M-----QR--G--DGQWIDR-I---PAWIK------------------------------YATVE------------------------
+-------------AGKM-----GA-SYD------------------GI-L-W----------NPPEDQR-----YKF---E----HPR--PP--KPVVPR
+IYEAHVGMSSKEP------------CVASYIDFADNVLPRIKSNNYNTVQLMAVMEHSYYA--------------SF--GYHVTNFFGVSSRS----GTP
+-------EELKYLIDRAHSLGLRVLMDVVHSHASNNI--KDGLN--GF-DL-GQQTQ-----ESYFHTGDR--------GYH-------KL---------
+----WDS---RLFNYNNWEVERFLLSNLRWWLEEYQFDGFRFDGVTSMLYHHHGIH------------------MSFSG-RY-----R-----DYFSEAS
+DVDAAVY-LMLAN------ELVHTLYPDATT-IAED--------------V---SGMPTLGRPVSEGGVGFD-YRLAMGIPDTWI-KLLK---------E
+VA---------------------DEHWS----MAEIAST---L-LNRRYTEKAIAYAESHDQSLVGDKT--LAFM-----LMDKEM---YAGMSALQEQS
+IIIERGIALHKMIH-FLTMALGGDGYLNFMGNEFGHPEWIDFPRE-----------GNKWSYDKCRRQWDLVDT--DHLRYKFMNEFDKAMNALEEKYHF
+LTL--PL-IVSST----------------------HDKDKV-------------IVFERGD-------------------------------------LV
+FVFNFH--PETTYEGYKI----------------------GCDL-PG-KYKIALDSDAF----DFGGRVRVGHDVDHFTSPEGIPGRPETNFNNRP----
+------SSFLVLSPARTCQVYF-KVPK------------------------------------------------DAVQSEEENEDVSQPAASVL-----
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----QLISQSAAQKELPFNFMDDIPDFSQ---D
+>XP_002988323.2_uncharacterized_protein_LOC9662716_Selaginella_moellendorffii                                         
+---M------------------------------------------------------------------------------------------------
+-----------AS-----AAVIRPHSCSTF---IPGN---------------------------------------------------------------
+----------------RQGVRATG--IQKRLSYT-HFVNAAL--QRDSPVVEDSKRKTVTKQMSASTSDWSNESLKSELGNVLQEKIA-----ALEKQNV
+KDINKKAQ--K----------IAEFVLEEISRRSAK---RKDVVEKTSVADA-----------NLTVEKTVKDAASDAAVSVATELEAVADEARKALETA
+K--------------------------------EC---AQR--AEETLAQKLLLLEKVPKPELLLSTLEESVAS-LEKQLEIAKDDLSRLQFAADAAKSQ
+AKVAEARA----AKADVTIQE-LRQKVGDAAQERASMFN-------------ETVESLR-ATASAREESLKVA----F----EAQ---LAALQAAMEASE
+K----------AKKIKEQANL---------------------RRFQAFE---------------NALAASE-ASLLA-WK-------------ERALN--
+SEG-LLQR----------------SDA--EW-S---VVFSDGRMTALLGGD-KIAELVEGGPRREIPDWMKKRIQA-AMQGIPPRHQTTVSADTETSKPL
+-ELPSLEEVWSVAKAK---------VKQ----------------DDLFSK-DVVAKETLDKQRRDLEQALGQTTITK---RKGR--VI--KEKPESGTGS
+GREIVFQGFNWES----------CR-KRWYQDLAP-KAADLSQSGITTVWFPPPTESVA----------------PQ--GYMPVDLYNLNSAY----GSM
+-------DELKHCIQEMHKHDLLVLGDVVLNHRCAYKQNSNGVW-NIF-G---------G-KLSWGPEAIVNDDPNFQGRGNPSSG--D--------IF-
+----HAA---PNIDHSQAFVRKDIKEYLDWLKTEIGYDGWRLDFVRGFWGGY-V-K-------------------EYIE-ASE-PAFA----IGEYW---
+--D--SL-L-------------YE---GGNV-AYNQ--------------D---AHRQRIIDWINATG-----G-TSSAFDVTTKGILH----------A
+ALH--------------------NEYWR----LIDPRQKPPGV-M-GWWPSRAVTFLENHDTGSTQG---------------------------HWPF--
+-----P-RDKLLQG-YAYILTHPGTPVIFYDHFYDFG----------------------------------------------LRDPIVDLIAARNRTGI
+NCR--SPVKIFH-------------------------ANND------------GYVAKVGE-------------------------------------QL
+V-VKLG-RFDWNPSK-------------------------QNDL-IG-NWKRSVGQGS--DYQ---VWE-------------------------------
+-----------------------EE---------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------
+>XP_015644348.1_1_4-alpha-glucan-branching_enzyme_3_chloroplastic/amyloplastic_isoform_X1_Oryza_sativa_Japonica_Group 
+---MDS---CA--------------------LFL------------------------------------------------------------------
+-------------STPRP-----PPPLVPAHRRRPLASRSGLRRREGCPCSCASSSSSSG----------------------------------------
+RAGSQDRPPRPWQQKQRTQRPGRGEAIDPVGFLAKHGIS----------------------------------------------------------DRA
+FAQFLRDR--Y----------KALKDRRWELHSRLIDLKEASSGFELMGMHR-----------HRQHRVDFMEWAPGARYCSVVGDFNQWSTTENCAREG
+HLGHDDFGYWTIILEDKLREGQEPDEYYFQEYNYADDYDKGDNGVDVEELIHRMNEEYWEPGE-------------------------------------
+-IKSQKS----RLEVVAKLYE-QMFGP----------NGPQTEEELGDIPDA-ETRYNEW-KALQKDDSASSLPCYDI----IDNGQEFDI---------
+--------------FN-V------------------------ATDRVSF---------------EKFQGKS-PPLAYWVEMRKGRKAWLEKYVPA-IS--
+HKD-KYRVY--F-----NT--P--DGG-LER-I---PAWATYVLPG-------------------SPNLSFFCVDA------------------------
+-------------EGK---------QSY------------------AV-H-W----------DPPPEEI-----YKW---R----FER--PK--VKGSLR
+IYECHVGISGSEQ------------KISSFQEFTSNVLPHIKDAGYNAIQLIGIVEHKDYS--------------SV--GYKVTNYFSVSSRF----GSP
+-------DDFKKLVDEAHGLGLVVLLDIVHSYASADE--LVGLS--LF-DG----SN-----DCYFHSGKR--------GHH-------KY---------
+----WGT---RMFKYDDIDVLHFLLSNLNWWVTEYRVDGFQFHSLPSMLYTHNGFS-------------------TFTG-AT-----E-----EYYNQYV
+DEDALIY-LIIAN------EMLHELHPDIIT-IAED--------------A---TFYPGLCEPTTQGGLGFD-YWVNLSIPEMWL-WHLE---------N
+VP---------------------EQEWS----MNKIMRV---L-VNNNS--NMLSYVENHNQSISGRKS--FAEI-----ILYEGK---CSNSSVDND--
+-LIFRASSLLNIIK-LITFTTSGGAYLNFIGNEFAHPKRIEFPMS-----------SNDYSFCLANRQWELLDK--GV--HKHIFNFDKDIMSLDGKERL
+ISG--GSPIVHHC----------------------DDTSMI-------------IYFTRGP-------------------------------------FL
+FVFNFN--PDASYQLYSV----------------------GVDE-AG-EYQLILNTDET----KYGGRGELTSNQYMKRT-------SDNRVGGCR----
+------NSLELTLPSRSAQVFK-LVRILRI----------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------
+>XP_015649620.1_alpha-amylase_3_chloroplastic_Oryza_sativa_Japonica_Group                                             
+---M----------------------------------------------------------------------------A---VAS-------------
+------------------WSIPAIPRAGPT---ARGVLLGGAFVTAARPPVAWRCRATLP----------------------------------------
+RRVRLGGVVARAGAAETPVAGSGEAGLLFSEKFPLRRSRTVE--GKAWVRVDAEPDGEGKCKVVIGCDVEGKWVLHWGVSYDGEQGREWDQPPSDMRPPG
+SVPIKDYA--IETSLDTPHNSEGKTIHE----------VQIKIDKGTSIAAI-----------NFVLKEEET------------GAWFQHKGQDFRIPLS
+G--------------------------------SF---GGD--LLGTEQDIDVRPGALGHLSNVLQKPEGPIAE-PHKT--------------VP-----
+----------------------------DDKGSRTKHIS-------------GFYEEYPILKTVYVQNFITVN----V----REN---NGTTKHAVEFDT
+DIPGEVIIHWGVCKDNTMTWEIPPEPHPPATKIFRQKALQ--TMLQQKA---------------DGTGNSL-SFLLD-GE-------------YSGLI--
+FVV-KLDEY--TWLRN---------------------VENGFDFYIPLTRADAEADKQKADDKSSQDDGLISDIRN-LVVGLSSRRGQ-----RAKNKVL
+-QEDILQEIERLA-------------------------------AEAYSI-FRSPTIDTVEESV------------Y---IDDS--SI--VKPACSGTGS
+GFEILCQGFNWES----------HKSGKWYVELGS-KAKELSSMGFTIVWSPPPTDSVS----------------PE--GYMPRDLYNLNSRY----GTM
+-------EELKEAVKRFHEAGMKVLGDAVLNHRCAQFQNQNGVW-NIF-G---------G-RLNWDDRAVVADDPHFQGRGNKSSG--D--------NF-
+----HAA---PNIDHSQEFVRSDLKEWLCWMRKEVGYDGWRLDFVRGFWGGY-V-H-------------------DYLE-ASE-PYFA----VGEYW---
+--D--SL-S-------------YT---YGEM-DYNQ--------------D---AHRQRIVDWINATN-----G-TAGAFDVTTKGILH----------S
+ALE-------------------RSEYWR----LSDEKGKPPGV-L-GWWPSRAVTFIENHDTGSTQG---------------------------HWRF--
+-----P-FGMELQG-YVYILTHPGTPAIFYDHIFSH-----------------------------------------------LQPEIAKLISIRNRQKI
+HCR--SKIKILK-------------------------AEGN------------LYAAEIDE-------------------------------------RV
+T-MKIGA-GHFEPSG-------------------------PT------NWVV-AAEGQ--DYK---VWE-------------------------------
+-----------------------VSS--------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------
+>XP_024394371.1_isoamylase_1_chloroplastic-like_Physcomitrium_patens                                                  
+---MAM---A------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------------------------------MAMG----------------------------------------------------------VGG
+HRSSSAGAV------------FTSQVCSRGAGVGTKVAVRVDHVVKAIKADDGSGNGKEKNTL--------GWKSTH---LSARPL--------------
+-T-----------------------------------ICRV--AG---------VSSDSANTE---------------------TESKEEAGHRL-----
+CGPPLRG----RPLPFGATACEE------------------------------GVNFAVH-SSGATAVALCLF----TESDLQQ----------------
+--------------------------------------------------GVVTKEVPLHPVFNRTGDVWH-IFLPD-LQ-------------SN-LL--
+YGY-RVDGRYIL-----EE----GACY--DARRILVDPYAKA------------------------------V-ISRERYG------T-----LGEG---
+---------GDCW-------------------------------PQMAGM-IP----------DL-HDE-----FDW---DGD--FPP--RI--PQKDLV
+IYEMHVRGFTKHASSEV-------EHPGTYIGMIE-KLAYLKALGINAIELMPSHEFNELEYHAYNPMMSDYKMNFW--GYSTINFFSPMIRYASA-GNK
+NCGKEAIKEFKSLVREAHKLGMEVLMDVVFNHTAEGN--EMGP-TISF-R---GFDN-----HVYYMIAPK----------G-EFY--N--------YS-
+----GCG---NTFNCNHPVVRRFIIDCLRYWVTEMHVDGFRFDLASIMTRASSLWD-----------------KVNVFGRSDELVNDT-----VTTGTPL
+NEPPLID-MISNDPVLRGVKLIAEAW-DCGG-LYQVGSFPHWG-VWSEWNG---QFRDMVRLFIKGTE-----GT-AGIFAQCLCGSPH----------L
+YQE------------------GGRKPWH----SINFITAHDG-----FTLADLVSYNQKHNVANGEDN----NDGDNHNNSWNCGE---EG--EVVSI--
+-PVQRLRQRQLRNF-FVALMVSQGVPMITMGDEYGHTKGGNNNTYCHDN-----------FIN--YFRWDMKRA--D---PNGFHRFASLMMNFRSG---
+--------------------TECLRLGDFLTGDRLEWHGIFPNTPDWT-ESSKFVAFTLVDQ--------------------------------------
+--------------------QKRELYIAFNASHLPVMVTLPDR-V-GAKWYPLVDTSKPTPYD---FLV--------DD----------VPNIDV--VLA
+QTSNFLNSNLYPMISYSSIVLVLKDEDA------------------------------------------------------------------------
+-------------------------------------------F--------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------
+>XP_024531535.1_isoamylase_1_chloroplastic_Selaginella_moellendorffii                                                 
+---MAM---A------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------------------------------PAIV----------------------------------------------------------SGA
+IPSASP---------------DAPRVCHRGDAAAASCSDRAPPHCVNLARG--------WHCR--------GKISWWRHCNGGDPV--------------
+-V-----------------------------------SCRA--ME---------TST-SSYSS-----------------------SESVDVKKL-----
+AGSPKRG----RPLPFGATPVEG------------------------------GVNFSVH-SSGAIAVSLCLF----TEEDLQK----------------
+--------------------------------------------------GRVSKEFPLHPVFNRTGDVWH-VYLPD-VC-------------PN-LL--
+YGY-RLNGKFSL-----EE----GCCY--DLSRILVDPYAKA------------------------------V-VSRGKYG------A-----LGPG---
+---------NSCW-------------------------------PQMAGM-VP----------QL-NDE-----FDW---QGD--SPP--RH--KQKDLI
+IYELHMRGFTQHPSSNV-------DFPGTYLGALE-KLPHLKDLGINAIELMPIHEFNELEYYSYNPVMGDHKMNYW--GYSTINFFSPMTRYASS-GIQ
+NCGRDAIKEFKTFVREAHKLGIEVFMDVVFNHTAEGN--EMGP-IISF-R---GLDN-----RVYYMTAPK----------G-EFY--N--------YS-
+----GCG---NTFNCNHPVVRRFIVDCLRYWVLEMHIDGFRFDLASILTRASSLWD-----------------KANVFGTSEDVDGDS-----VTTGTPL
+SEPPLID-MISNDPVLRGVKLIAEAW-DSGG-LYQVGNFPHWG-IWSEWNG---QYRDTVRLFIKGTD-----GL-AGAFAQCLCGSPH----------L
+YQD------------------GGRKPWH----SVNFVTAHDG-----FTLLDLVSYNSKHNIANGESN----NDGETHNNSWNCGE---EG--ELVSI--
+-RVRRLRHRQLRNF-LVALMVSQGVPMVTMGDEYAHTKGGNNNTYCHDN-----------AIN--YFRWDKLRT--D---PTGLFRFSRHLFNFRRQ---
+--------------------SESLGLGDFPTAERLEWHGVVPETPDWS-ETSRFVAFSLVDA--------------------------------------
+--------------------KKRELYIAFNTSHLPVLVTLPER-P-GFKWQPVVDSSKPAPYD---FLA--------DD----------IPDLAT--AYA
+QYSPLLNAQIYPMISYSSVILVLVPLNE------------------------------------------------------------------------
+-------------------------------------------D--------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------
\ No newline at end of file

runs/BEAST/alignment_files/g41182_select.fasta

+>CBr_g41182_beta-amylase_3                                                              
+------MSAAVSTVSNKWVSLNS---SKNRTSS----------RVKGGGGGGHCQRSPVVVVAAAPGTKS--GSRSRSPL-STSSSAAAARADLATGR--
+----------------------------------------------------------------------------------------------------
+---------RRKSFLQTSSSSSSSSSPSSPSS------PSSSSFAHSRSHPELYVSFLAVRPSGGPVQARISSSSSRCIVAIDRRPFEAVSPTALSSIAR
+TETLPCGFSRSCSLFPPPSSSSFFACSFASSSSSSSSSSSSSSRACASCSSSCPSSSSSSSSCPSTSSTERWELTSRAENPSSGGPHESEGPGCCASETS
+TESSLSSEFGVTLTHLPGAGPLSLTQLSGRKITTGWSHLAAVIRREKLKKSLKEAEDELSDIELCLRRAGLTSDQRKKVATVVGSRRDSSSSRELARAS-
+-PPHPHPHPHPAASAGK-----------A------VAHSLAISDA--G-RFIGERGQTGGNSASIGPTWCRSGLCPAASAPPSLIQEHRQGRDSRWNGGA
+PKGACGVEEKVAERQKKKEEEEEREEREKREEREEKGDHQPAQHRWSCPAQSQLKEPGAL-----------LQLAVEGGVGAVNMVEGGDGPFRSTTGPT
+GRRPSMGNETSTTQSTMLDTPTSFYTLGHDGHHGWPTDSRDRGLE-N--QR--------------------------------------EDGRDR-G---
+---T-AENES-EDGESASEVPVYVMLPLNTVSEQG--------LS---NPKMLETALKALK-NVGVRGVMVDVWWGVVERDEPRRYDWTPYRQLFVILRR
+LGLKLQAVMSFHSCGSNVGDDYKQPLPRWVLQIGDVDEDIYFADVHG-----NKNAECVSLFADEE-PVLHGRTPIQCYQDFMRSFRQELGEFIG-SVVV
+EVSVGMGPCGELRYPSYPEG--RWKFPGIGEF-------QCYDKRAAAHLRSAATARGHPEWGHCGPHD-SGTYNCFPHETGFFRDHG-GNWDTEYGRFF
+LEWYSGALLQHGERMLRAACRAFF-DV-------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+--------------------------DLSGMGYCSVARRSGPHTGNGRGGELQS----------------------------------------------
+-PWRSRT-DGQVKLSVKCAGVHWWYNTASHAAELTAGYYNTRK-----KRGYDDIVYMCWMY-GAELNFTCIEMRDSEQ---PGSAYCSPEGLLKQVRLA
+AARRRVPLTGENALSRYDDEAF-----RQMLTQSFEVVVDEDSSSERGQ--PKKRHLLPPLAGLTYLRLTPLLLDDVQFTRFKNFVESMR-R-RSRDTNR
+-VV--DASRR----AGQQP-----VCHRRG-----------------------------TS------------VGGG--AGGGGGPAAVVVVV-G----G
+EAAGGGGGAAGSPSSTSGSNNNGSPRHL--------------------------------D----------LD---------------------------
+-----------------------------------LDLDFDF------------------------DFDFD-----------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------L-----------------------------------------D
+>EFJ18922.1_hypothetical_protein_SELMODRAFT_419538_Selaginella_moellendorffii           
+---------------------------------------------------------------MDARFLC--CPVALLPR-CHPKLAPAARSNHFVQA--
+----------------------------------------------------------------------------------------------------
+---------ITGRKVSNLASHKMVSRSSTSS---------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+--------------------------------------------T--A-A--------------------------------------------------
+----------------------------------------------------------------------------------------------------
+---------------------------------------------------------------------------------------AVEEMTKE-----
+-----EEKEE-RDFAGTPYVPIYVM-------LPLGLISES-NEL--VNPEGIRRDLQALK-SVNVDGVMVDCWWGLVE-DTPQKYNWSAYRELFTIVKE
+SDLKLQVVMSFHQCGGNVGDDVNIPIPKWVLEIGKENPDIFFTDKHG-----HRNPECLTWGVDKE-RVLKSRTGLEVYFDYMRSFRQEFDDLFQSGVIA
+EIEVGLGACGELRYPSY-----------------------CYDKYLIKSLKQAAEARGHTEWGC-CPDN-AGEYNSKPQETDFFRD-G-GDYDSYYGRFF
+LKWYSKVLIEHGDRVLMLAKLAFE-GF-------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------HIASKVSGIHWWYKTASHAAELAAGFYNPCN-----RDGYVEIAEMFAKH-DASLNFTCVELRTLAQEEDFPEALADPEGLVWQVLNA
+AWDAGIYVASENALPCYDRDGY-----NKILENAKPSKN------------P----DGRHISAFTYLRLSPVLMEEHNLHEFARGRRLRTLK-QA-----
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------------------------------K
+>EFJ25140.1_hypothetical_protein_SELMODRAFT_149606_partial_Selaginella_moellendorffii   
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------M-------LPLDSINSGNNQV--NRARAMNASFQALK-SAGVEGVMVDVWWGIVEKDGPCNYNWSGYRELLEMAKK
+HGLKVQAVMSFHQCGGNVGDSAFIPLPWWIVEEAKNNPDMVYTDRYG-----NRNFEYLSLGCDHL-PVLKGRTPVQAYSDFMRSFKESFSDMLGD-VIV
+EIQVGMGPAGELRYPGYPERDGIWKFPGVGEF-------QCHDNYMLASLKASAEAIGKPDWGC-APSD-AGHYNQWPEDSIFFKR-D-GGWNTDYGRFF
+LEWYSGKLIEHGESVLTAAEGIFR-GS-P-----------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------VRLSAKVAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPLARMFGRH-GVTFNFTCFEMRDVEQ---PAAAQCSPEGLLKQVVAA
+AKSAGVPLAGENALPRYDEGAY-----HQIVMKSRLEVEGEES----------MERAYEPMCCFTFLRMNERLFHPENWRRFVQFVKEIG-D-G------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-------------------------------------------------------------------------------------------
+>GAQ79600.1_beta-amylase_Klebsormidium_nitens                                           
+------------------------------------------------------------MSSGTPP---------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------PYRIRAKSRG----VYHEEKLSNNTIH--F-S--------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-------------------------------------------------------------------------------------------PLPG-S---
+---G-PQVLS-REPLVQNHVPIYVM-------LPLDTVTIV-NTL--NHVKALNAGLRALK-SIGVAGVMVDVWWGIVEADGPRQYDWSAYMALIKMVHS
+MGLKVQAVMSFHACGGNVGDSCLVSLPYWVLQEAEKNPEVLYTDQNG-----NRNGEYLSLGVDCLP-LFEGRSPVQIYHDFMESFRDTFHQYLGD-CIV
+EVAVGMGPAGELRYPSYPEGDGRWRFPGIGEF-------QCYDKYMMANLRACAAAVGRPEWGLRGPHN-SGNYNNWPDETGFFNQ-HSGAYMNEYGDFF
+LSWYAENLAAHGDRVLGAAAAVFQ-GT-------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------GVVLAGKLAGVHWWNRHPSHAAELTAGYYSCRGKNLVRKEGYERIVRVFAKH-EAVLNFTCVEMADNEQ---PPEAMCSPERLLLKVRQT
+AARYGVPVSGENALPRYDLSAH-----RMIKHNVHRKDM----------------RNLPRMVAFTFLRMGESLFQTDHWRLFVEFVRNMDK--RE-LLED
+PKK---P--R-K-EGQHGVPHSVDVRK----------------------------------------------------NTQVL----------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------------------------QMQ---L
+>KAH7283555.1_hypothetical_protein_KP509_34G013300_Ceratopteris_richardii               
+------MMVCVR-LPEA---------------------------------------------AEMVR-FWLPGATARAKF---LRSSM------------
+----------------------------------WRICLAFCWTSKQQRQSNHARIISRRSQLPFHQ----------KK----------KKHGARHF---
+---CRR-GFSVRGLVEA-----------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+---TK--RQPR--SIVDV---------------CLP---------C------------------------------------------------------
+-----------------------------------------------SPSLFEDGD--------------------------------------------
+----------------------------------------------------------------------------------------LFLQQKV-H---
+----RDSRSVIRRGPEAG-VPVYVM-------LPLDSINPHNNTI--NRRRAMDASLLALK-SAGVEGVMLDVWWGR-----------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-------------------------------------------------------------------------------------------
+>KAJ0630873.1_putative_beta-amylase_Helianthus_annuus                                   
+----------------------------------------------------------------------------------------------------
+------------------------------MALTLRSSTS-FISSKDIKT-LK------------------------SL-E-DFP-GTVCFAHIKPT---
+---PR--RLRAKNSLQDAHITREK----------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-------------------------------------------------ITSPFEGMFDEQ---------------------------------------
+---------------------------------------------------------------------------------------KEKFHALS-S---
+---------S-HHTKNDSRVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-SAGVEGVMVDVWWGLVEKDGPMKYNWEGYVELVNMVQK
+HGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISGNPDVVYTDRSG-----RRNPEYISLGCDSL-PVLRGRTPIQVYSDYMRSFQQKFKNYLGN-VIV
+EIQVGLGPCGELRYPSYPESNGTWRFPGIGEF-------QCYDKYMKASLEAAAEATGQKDWGKSGPHD-SGHYNQFPEDTGFFKR-D-GTWDTEYGRFF
+MQWYSGKLVQHGDRILNSANAIFT-GT-G-----------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------AKLSAKVAGIHWHYKTRSHAAELTAGYYNTRN-----SDGYLPIARMLAKH-DAVLNFTCMEMRDHEQ---PQHAECSPEGLVRQVKMA
+VQAAGVELAGENALERYDGAAY-----KQVQETSR-------------------SDSGNGLCAFTFLRMNKRLFEAENWRELVNFVRSMS--EGGRV-RL
+-PE--R-----TDL----Y----VRFVDDK-----------------------------KM------------KGSL--KGDKE-----VV---------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------------------------L--V---
+>NP_001352477.1_Beta-amylase_3_chloroplastic_Zea_mays                                   
+----------------------------------------------------------------------------------------------------
+------------------------------MALTLRSSTS-FLSHVDPAS-KL-----------------------LHKPTDEAP--PCCVS-VPPA---
+---PSR-RPRALRAAAATATAPSP----------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------ATHRAPAEA---------------------------------------
+---------------------------------------------------------------------------------------AELLHGGG-A---
+---G-----Q-QHGLPRGGVPVYVM-------LPLDTVGPG-GQL--SRQRAVAASLMALR-GAGVEGVMVDVWWGVVEREGPGRYDWEAYAELVRMVER
+AGLRLQAVMSFHQCGGNVGDTCNIPLPPWVLEEMSSNPNIVYTDRSG-----RRNPEYISLGCDTL-PVLRGRTPIQVYTDYMRSFRQRFRDYLGN-VIA
+EIQVGMGPCGELRYPSYPEANGTWRFPGIGEF-------QCYDKYMRASLEAAAVASGHEEWGRGGPHD-AGEYKQMPDDTGFFRR-E-GTWSTEYGHFF
+LEWYSGMLLEHGDRVMDAAEAVFG-GT-G-----------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------ATLSAKVAGIHWHYRTRSHAAELTAGYYNTRG-----RDGYAPIARMLAKR-GAVLNFTCMEMKDEQQ---PQHASCSPELLVQQVKAA
+TSAAGVQLAGENALERYDDAAF-----SQVVSTAR----------------------GAGLAAFTYLRMNKTLFDGDNWGRFVSFVRAMA--DGGARPAL
+-PR--C---D-T-GHSDLY----VGFVDAA-------------------------------------------KERKAAEAKGA--AT-TA---------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------------------------A--L---
+>NP_189034.1_beta-amylase_1_Arabidopsis_thaliana                                        
+----------------------------------------------------------------------------------------------------
+------------------------------MALNLSHQLGVLAGTPIKSGEMT-----------------------DSSLLS-IS-PPSARMMTPKA---
+---MNR-NYKAHGTDPSPPMSPILGAT-------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+---------------------------------------------RAD----------------------------------------------------
+-----------------------------------------------LSVACKAFAVENGI---------------------------------------
+---------------------------------------------------------------------------------------GTIEEQRT-Y---
+---R-EGGIG-GKKEGGGGVPVFVM-------MPLDSVTM-GNTV--NRRKAMKASLQALK-SAGVEGIMIDVWWGLVEKESPGTYNWGGYNELLELAKK
+LGLKVQAVMSFHQCGGNVGDSVTIPLPQWVVEEVDKDPDLAYTDQWG-----RRNHEYISLGADTL-PVLKGRTPVQCYADFMRAFRDNFKHLLGE-TIV
+EIQVGMGPAGELRYPSYPEQEGTWKFPGIGAF-------QCYDKYSLSSLKAAAETYGKPEWGSTGPTD-AGHYNNWPEDTQFFKK-EGGGWNSEYGDFF
+LSWYSQMLLDHGERILSSAKSIFE-NM-G-----------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------VKISVKIAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPIAQMLARH-NAIFNFTCIEMRDHEQ---PQDALCAPEKLVNQVALA
+TLAAEVPLAGENALPRYDDYAH-----EQILKASALNLDQNNE------------GEPREMCAFTYLRMNPELFQADNWGKFVAFVKKMG-E-GRDSHRC
+-RE--E---V-E-REAEHF----VHVTQPL-----------------------------V--------------------QEAA-----VA---------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------------------------L-TH---
+>OAE23062.1_hypothetical_protein_AXG93_3509s1060_Marchantia_polymorpha_subsp._ruderalis 
+------MMNIM----------------------------------------------EQHLEHLDSLDQL--DTETGSDS-DMLALTPAQSGQERKSR--
+----------------------------------------------------------------------------------------------------
+---------RGGRPRSLVWQHFIVSGERTDK------SRR------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+--------------------------------------------------------------------------------------------FNVCCKS-
+-CGIDMVSRLGTMEKHI-----------A------FECEKADPDG--R-V--------------------------------------------------
+------------------------------------------------KIQERLAVKSAQIIG-------------------------------------
+------------------------------------------------------------------------------HAAKRVKKEGRRKLFEV-H---
+-----ERDFE-RDFAGTTYIPIYVM-------LPLNTIDEN-NEV--SDPEFLKYDLRALK-SVNVDGVMVDCWWGLVEGKAPQHYNWNGYRQLFNIVRE
+AGLKLQVVMSFHQCGGNVGDDTNIPIPSWVLDIGEKNPDIFFTDRQG-----VRNPECLSWGVDKE-RVLAGRTGLEIYYDFMRSFRSQFDEFFEDGTIT
+EIEVGLGACGELRYPSYPERHG-WKYPGIGEF-------QVYDKYLQKSLTKAAVQRGHGDWAR-APDN-AGEYNSRPQDTGFFRD-G-GDYDSYYGRFF
+LKWYSQVLIEHGDNVLTLANLAFE-GY-------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------KIAAKVSGIHWWYKTASHAAELAAGFYNPSN-----RDGYAPIAEMLAKH-KAALNFTCVELRTSSQEEGHPEAMADPEGLVWQVLNA
+AWDSNISVASENALPCYDRDGY-----NKILENAKPLKD------------P----DGRHLVAFTYLRLNPTLMEDSNLDEFALFVKRLH-G-KQTHFS-
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------------------------------S
+>PRW56984.1_Beta-amylase_chloroplastic_isoform_A_Chlorella_sorokiniana                  
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+---------------------------------------------------------------------------ML-----------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------SRIYQA------------------S----------------------------------DA--RM-A---
+---P-ARQRARITAPV-RGVPVYVMLPLDTVWLLERDGATQ-PLL-I-REKAMEVGLEMLS-RAGVDGVMIDVWWGIAEHAGPGHYDFSAYRKLFEQVAS
+KGLKVQAVMSFHAAGNNVGDCCRISLPRWVVEAGEADPDIFFTDSSG-----YRNRECLSIGADEQ-PVLAGRTPIQAQADFIAAFADEFGDMLG-GVIT
+EVTVGMGPAGELRYPSYPEGDGRWRFPGIGQF-------QCYDKYMLASLREAALAAGHPEWGHGGPHD-SGSYNSHSSETGFFKSYG-GSWDTEYGRFF
+LNWYSGLLNQHADRLLGAARQVLS-AR-------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+--------------------------CR-------------PRTMREARELSDG----------------------------------------------
+-GMLYVF-EPAVQLGIKLAGVHWWFKSRAHAAELTAGYYNTRE-----RNGYLPIFEMLKRH-GATASFTCVEMRDCEH---PIEGRCSPEGLLNQVLST
+AARVGVPMSGENALQRYDQWAF-----DKICDSAFG-----------------QSVMAGRLEKLTFLRMGDMMI-D-NWSAFGAFLQRLT-C-PP-----
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------------------------------S
+>PTQ29109.1_hypothetical_protein_MARPO_0147s0005_Marchantia_polymorpha                  
+------MA-VS----------------------------------------------LMSGIH-VGLNAQ--CARAASAP-ACQANADADAARKVSEL--
+----------------------------------------------------------------------------------------------------
+---------RLGGFRLNKWQGLKCDGRARRD------ALL------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+--------------------------------------------------------------------------------------------LPISSNS-
+-R--------RDSPRMI-----------R------AEAAQQEGDV--A-V--------------------------------------------------
+------------------------------------------------RTQELTVEKPVES---------------------------------------
+---------------------------------------------------------------------------------------TEDDQVKV-H---
+-----ERDFE-RDFAGTTYIPIYVM-------LPLNTIDEN-NEV--SDPEFLKYDLRALK-SVNVDGVMVDCWWGLVEGKAPQHYNWNGYRQLFNIVRE
+AGLKLQVVMSFHQCGGNVGDDTNIPIPSWVLDIGEKNPDIFFTDRQG-----VRNPECLSWGVDKE-RVLAGRTGLEIYYDFMRSFRSQFDEFFEDGTIT
+EIEVGLGACGELRYPSYPERHG-WKYPGIGEF-------QVYDKYLQKSLTKAAVQRGHGDWAR-APDN-AGEYNSRPQDTGFFRD-G-GDYDSYYGRFF
+LKWYSQVLIEHGDNVLTLANLAFE-GY-------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------KIAAKVSGIHWWYKTASHAAELAAGFYNPSN-----RDGYAPIAEMLAKH-KAALNFTCVELRTSSQEEGHPEAMADPEGLVWQVLNA
+AWDSNISVASENALPCYDRDGY-----NKILENAKPLKD------------P----DGRHLVAFTYLRLNPTLMEDSNLDEFALFVKRLH-G-ESI----
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------------------------------H
+>XP_001691372.1_uncharacterized_protein_CHLRE_06g307150v5_Chlamydomonas_reinhardtii     
+------MPTS-------------------------------------------------LPQC-----------PS------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------------------------------------APRSVQPLRSALLAAQRLSQC-------------RG-SRSQRGS-------GACHSQGR
+-------------------------Q-------------------------------------------------VTHPTAHPRTSR-------------
+---------TLDDDSGF-----------A------SFAPEPIVTT----------------PGAS-----------------------------------
+----------------------------------------------------------------------------------------------------
+-------------------AFSEVEDDLQIHRLLRET-----GQHIK--IPMIDE----------------------------------DRFDTQ-Y---
+---P-ESQAE-EPSSSGSGCPVYVMLPLDTVWVVERDGKRI-SVL-K-KERSLDIALHTLK-QAGVEGVMVDVWWGIVERAGPRQYDFSAYKRLFYKVAA
+AGLKVQAVMSFHAAGGNVGDTCKIPLPKWVLEIGERNPDIFYTDKAG-----HRNRECLSLGCDEV-PLFWGRTPVLMYRDFINAFADKFQHLFG-TVIT
+EVTVGLGPAGELRYPSYPEGDGRWRFPGVGEF-------QCYDKFMLESLRRTAEAAGHAEWGLSGPHD-AGHYNSSSWETGFFVSQN-GSWNTAYGHFF
+LSWYSNMLLEHADRVLSSAAEVLN-KH-------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+--------------------------GR-------------PRVFNSMRDASNG----------------------------------------------
+-HVIYEF-TPACKMGIKLAGVHWWFKSRAHAAELTAGYYNTRD-----RDGYLPFMAMLRRH-DASLSFTCVEMRDCEH---PPEGRCSPQALLQQVIEA
+AEKYGVPLSGENALQRYDDYAF-----ERIAESAFG-----------------RNARAGRLTQVTFLRMGDLMF-D-NWDAFSRFLNRMR-N-K------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------------------------------A
+>XP_002968794.2_beta-amylase_1_chloroplastic_Selaginella_moellendorffii                 
+------MSSSS-----------------------------------------------------------------------------------------
+--------------------IVGRGRALFPESE--PSTSASVWNPDFSTTRVS-----------------------CSTLAR-RS-IICHMASPPAE---
+---EWW-KQQPQQHRSSSPISCFP----------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+--------------------------------------------------------------------------------------------SQVASHG-
+-PALA------PDFFEE-----------R--------PFELQ--HGIS----------------------------------------------------
+-----------------------------------------------SPSPSGF----PSK---------------------------------------
+---------------------------------------------------------------------------------------IAPPVEKE-H---
+---S-AQETP-TSKGKRSGVPVYVM-------LPLDSINSGNNQV--NRARAMNASFQALK-SAGVEGVMVDVWWGIVEKDGPCNYNWSGYRELLEMAKK
+HGLKVQAVMSFHQCGGNVGDSAFIPLPWWVVEEAKNNPDMVYTDRYG-----NRNFEYLSLGCDHL-PVLKGRTPVQAYSDFMRSFKESFSDMLGD-VIV
+EIQVGMGPAGELRYPGYPERDGIWKFPGVGEF-------QCHDNYMLASLKASAESIGKPDWGC-APSD-AGHYNQWPEDSIFFKR-D-GGWNTDYGRFF
+LEWYSGKLIEHGESVLTAAEGIFR-GS-P-----------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------VRLSAKVAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPLARMFGRH-GVTFNFTCFEMRDVEQ---PAAAQCSPEGLLKQVVAA
+AKSAGVPLAGENALPRYDEGAY-----HQIVMKSRLEVEGEES----------MERAYEPMCCFTFLRMNERLFHPENWRRFVQFVKEIG-D-GKGSSSS
+--R--E---H-E-HRASEL----LVATKPL-----------------------------I--------------------QEAA-----AA---------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------------------------L--V---
+>XP_023758910.1_beta-amylase_3_chloroplastic_Lactuca_sativa                             
+----------------------------------------------------------------------------------------------------
+------------------------------MALTLRSSTF--LNLKDIKT-LK------------------------TLDV-DFV-TTICFAQIKPT---
+---TR--RLRTRNSIQDAQLSREK----------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-------------------------------------------------MISPFEGMYDAQ---------------------------------------
+---------------------------------------------------------------------------------------KEKFHALS-S---
+---------S-HQMQNDSKVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-NAGVEGVMVDVWWGLVEKDGSLKYNWEGYVELVNMVQK
+HGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISRNPDLVYTDRSG-----RRNPEYLSLGCDSL-PVLRGRTPIQVYSDFMRSFKQRFKNYLGN-VIV
+EIQVGMGPCGELRYPSYPESNGTWKFPGIGEF-------QCYDKYMRASLEAAADANGKKDWGNSGPHD-SGQYNQFPEDTGFFRR-E-GTWDTDYGRFF
+MEWYSGKLLEHGDKILGSADRIFR-GT-G-----------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------AKLSGKVAGIHWHYKTRSHAAELTAGYYNTRH-----SDGYLPIAKMLAKY-DVVFNFTCMEMRDNEQ---PQHANCSPEGLVRQVKLA
+VKAAGIGLAGENALERYDGGAY-----AQVLTTSR-------------------SDSGNGLCAFTFLRLNKRLFEAENWRQLVNFVRSMS--EGGRV-RQ
+-PE--S---D-S-STTDLY----VRFVDNK-------------------------------------------LKSL--KEDKE-----AV---------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------------------------L--L---
+>XP_024357748.1_beta-amylase_2_chloroplastic-like_Physcomitrium_patens                  
+------MSIG------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+---E-AEHAE-CPSPVTPYIPTYVM-------LPLSTISNE-NKV--ADPEKLKEDLDKLK-RASVDGVMIDCWWGIVEGVTPQVYDWSAYYDLFSMVRD
+CKLKLQAIMSFHQCGGNVGDDVFIPLPAWVLRVGKENPDIFFTNRAG-----VRNPESLTFGIDDE-AVLDSRTALEVYYDFMESFRKDMQEFLEDGTIT
+EIEVGMGPCGELRYPSYPETQG-WKYPGTGEFQ-------CWDKYLLKNLKNAANEKEHPEWGV-GPAD-AGDYNCTPHNSAFFEE-G---RKSPYGEFF
+LDWYSRALIEHGDNLLTVARHALG-NT-------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------KLAVKVSGIHWWYKSASHAAELAAGYYNQAS-----KCGYTPIAKMLATH-DATLNFTCVELRTADETVKFPGALADPEGLVSQVLRA
+AWEQGVEVAAENALSFYEKSGY-----DQILVQAKP-K----D--------Y----TNHHLSAFTYLRLTPELMEEQNLEEFTQFVHKLH-G-AQ-----
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------------------------------C
+>XP_024365489.1_beta-amylase_1_chloroplastic-like_Physcomitrium_patens                  
+----------------------------------------------------------------------------------------------------
+-------------------------MSSAMCRSATLANRFVCGNVLTDRLQSE-----------------------ASSSGR-VE-LARFSARRAVP---
+---GVS-CSQRNQSDGHVAHTSSGSVS----S------FG------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+--------------------------------------------------------------------------------------------SLS-SEE-
+-WWRK--NTGSAGDSTG-----------G--------LRATH--HTQM----------------------------------------------------
+-----------------------------------------------DTMFPEHKSLLDWD---------------------------------------
+---------------------------------------------------------------------------------------NTADEWKE-H---
+---A-FHETP-TSRGVHGGVPVFVM-------LPLDSVNIN-NTL--KRRRALNASLLALK-SAGVEGVMMDVWWGIVEKEGPRNYNWSAYRELIDMVRK
+HGLKVQAVMSFHQCGGNVGDSCNIPLPPWVLEEVQKNPDLAYTDKAG-----KRNAEYISLGADNV-PALKGRTPVQCYADFMRSFRDNFKDLLGD-VII
+EIQCGMGPAGELRYPSYPESEGRWRFPGIGEF-------QCYDKYMLASLKANAQALGKPAWGHGGPCD-AGNYNQWPDETGFFHR-D-GSWCSEYGQFF
+MEWYSEMILAHGERLLASASGIFK-GT-G-----------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------AVISGKVAGIHWHYGTRSHAAELTAGYYNTRT-----RDGYATIAQMFAKY-GVTLNFTCIEMRDYEQ---PSQASCSPEGLVRQVALA
+TRRAGIPMAGENALPRFDSSAH-----EQIVRKSRLRMNEHGD----------CHEEYEPMAAFTFLRMCESLFHSENWKLFVPFVRHME-E-GRTFQPW
+--E--E---E-H-HRTETH----VHATRPL-----------------------------V--------------------QEAA-----S----------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------------------------LM-Y---
+>XP_024517073.1_beta-amylase_2_chloroplastic_Selaginella_moellendorffii                 
+------MRQAL-----------------------------------------------LSQAAMDTRFLC--CPVALLPR-CHPKLAPAARSNHFVQA--
+----------------------------------------------------------------------------------------------------
+---------ITARKVSNLASHKMVSRSSTSS---------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+--------------------------------------------T--A-A--------------------------------------------------
+----------------------------------------------------------------------------------------------------
+---------------------------------------------------------------------------------------AVEEMTKE-----
+-----EEKEE-RDFAGTPYVPIYVM-------LPLGLISES-NEL--VNPEGIRRDLQALK-SVNVDGVMVDCWWGLVE-DTPQKYNWCAYRELFTIVKE
+SDLKLQVVMSFHQCGGNVGDDVNIPIPKWVLEIGKENPDIFFTDKHG-----HRNPECLTWGVDKE-RVLKSRTGLEVYFDYMRSFRQEFDDLFQSGVIA
+EIEVGLGACGELRYPSYVPRSG-WEYPGIGEFQ-------CYDKYLIKSLKQAAEARGHTEWGC-CPDN-AGEYNSKPQETDFFRD-G-GDYDSYYGRFF
+LKWYSKVLIEHGDRVLMLAKLAFE-GF-------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------HIASKVSGIHWWYKTASHAAELAAGFYNPCN-----RDGYVEIAEMFAKH-DASLNFTCVELRTLAQEEDFPEALADPEGLVWQVLNA
+AWDAGIYVASENALPCYDRDGY-----NKILENAKPSKN------------P----DGRHISAFTYLRLSPVLMEEHNLQEFARFVKRLHG--EG-----
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------------------------------V
+>XP_025876615.1_beta-amylase_1_chloroplastic-like_Oryza_sativa_Japonica_Group           
+----------------------------------------------------------------------------------------------------
+------------------------------MALNLAQSAAAAACFATAG---------------------------DARRAA-SV-VAMPSSSSSAT---
+---TSL-RMKRQAACE------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------P------VA-------------------------------------------
+----------------------------------------------------------------------------------------CRAVAR------
+-----HVAAA-AASSRRNGVPVFVM-------MPLDTVSKCGSAL--NRRKAVAASLAALK-SAGVEGIMVDVWWGIVESEGPGRYNFDGYVELMEMARK
+TGLKVQAVMSFHQCGGNVGDSVNIPLPRWVVEEMEKDNDLAYTDQWG-----RRNFEYISLGCDAM-PVFKGRTPVECYTDFMRAFRDHFASFLGD-TIV
+EIQVGMGPAGELRYPSYPESNGTWRFPGIGAF-------QCNDRYMRSSLKAAAEARGKPEWGHGGPTD-AGGYNNWPEDTVFFRG-DCGGWSTEYGEFF
+LSWYSQMLLEHGERVLSGATSVFGDGA-G-----------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------AKISVKVAGIHWHYGTRSHAPELTAGYYNTRH-----RDGYLPIARMLARH-GAVLNFTCVEMRDHEQ---PQEAQCMPEALVRQVAAA
+ARAAGVGLAGENALPRYDGTAH-----DQVVAAAADR------------------AAEDRMVAFTYLRMGPDLFHPDNWRRFVAFVRRMS-E-SGSP---
+-RE--A---A-E-SAAHGV----AQATGSL-----------------------------V--------------------HEAA-----VA---------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------------------------L-RS---
+>XP_042923635.1_uncharacterized_protein_CHLRE_06g270350v5_Chlamydomonas_reinhardtii     
+---------M---------------------------------------------------RASIDRQCC---AAASSPA-S------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-------------------------------ARCPILGLLSRGQKRLGWRLGGHIASS--------------PHAEL-----------------------
+---------------------------------------------------------------------------------------T------------
+----------SPTPVAA-----------G------ATARA------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+---A-APTWR-STVDEEAVLPLYTCLDGDILTPAN--------KF--AYYEALRSGLKALR-ALGINGISVDVYWGIVEGAAPMEYDWSSYKQLFALIRD
+EGFMAQVCLCFHGTEA-------VPLPAWVLAAGAANPDIYFTDRA-----GVRNTHCISLGVDEVP-ALDGRTALACYRDLMTSFRVELEPLLG-STIV
+DVCVGLGPDGELKYPAHPRDRR-WNFPGIGEF-------QCYDKYMLAGLRACSHQVSQPSWGLGGPHD-AGAYTVWPQQTGFFNQ-Y-GNWSSPYGKFF
+LQWYSDMLMQHADSVLGIARDVLL-PAD------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-------------------------------------------------------------------------GSLSFSGSSAGFGSSSSSSSVRPGFYG
+NGYGNGNGIWRG---------------------------------------SPAAAAEPPR---------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------LRLHAKLPGVHWWYNTASRAPELTAGFYNTTS-----RDGYLPIMEVLSRH-GISVRLRSAEMRSSEIA--PQQACCDPERQVAQQRTV
+AAALLVPVGLENAHERFD-----ESALARLEASLFDTSVH-------------EGIELPQVQSLVFNRMCDSMFEPGNWSRFKEFVRRVR-N-RADTLVV
+-PAWRWRGGP----GSSMD-----GMALPL-T-----------------------------------------VELP--M-GGE----PQQVS-AGSGSN
+VAMAAAAAAAAAAAAVAAGNGHG-----------------------------------------------SGA---------------------------
+-----------------------------------TGAAGGGGDA------------------GMTAAAPT-----------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------GSAGALQL----------------------------------V
+>XP_042928768.1_uncharacterized_protein_CHLRE_01g044100v5_Chlamydomonas_reinhardtii     
+------MSSE---------------------------------------------------NILLDRALS---VQGPGYG-Y------------------
+----------------------------------------------------------------------------------------------------
+------------L---------------------------------------------------------------------------------------
+------------------HLGG---------VY----------GDCVATTALGYRAAA--------------PSMPAS-------ASVPS----------
+-------------------------F-----------------------------------------------------GQSGVLR-P------------
+----------HPRRYSQ-----------N------AFGTS------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+---L-S-PVH-GPSDGGTGANVYCMLPLDTVNSEG--------VFRYAGSAWFAQALQLLV-ASGAHGVAMDFWWGAVER-SPGQYNWSGYKQALEVIKQ
+TGLKVQVVLSFHACGGNVGDTVQIPLPDWVVQCAEADPDLFFADRPRNGGLGNRNREYLSIWADDAPGVLRGRSPMQCYEEYMVSLRENFSQELG-TVID
+EVVVGAGPCGELRLPSYVEANG-WRFPGAGEF-------QCYDRRALASLAQAAREAGHPEWGYTGPHD-AGEYNSTPEHTGFFSH-N-GSWNTPYGRFF
+LEWYSGCLLKHGDRLLTVANAVFA-SKLNPPPQPPQSLLQTLGAAGSALAAQLQQVAQQTVGSLGHGSSGGNAMGNGAGSGPSSSHGVQAFLSPMAPGGM
+NSYVTNTPFQPMSFMGLHTSQTSSGGPRMSTHSLNRILETGGSCGSRPGSGHASGNELTGSASADGGGMPPPPAPPLPRRQATEGMLSSCGVPSSISPCC
+TYSSMSTYTGTSSGGASGSTANMIMATAGSSGSLMSPRSMSVFHGTACGAPHSEAHGAVGAAAAAGTVLGGRRSSGGGAAGSPQNASGVFSAAMNAMVTR
+GVATAAALMQAAAAQGGAATSMAATNARAVAAACGSSSRTSSDSAAATNVGTTGAAALASGDATMIDVEPSDNSHTSTVAELMNAQGLSGSSNASGPLAH
+PLNAAAQPGTLAPTAVTAAASGAIVAAPGAGHASCHPSPLSGVRFRSSASTLADAEPMFGSGQGTAFAAVAAAGVIIASGHTARMDLCNSLSSLSTEFTT
+TGATNGAGNIASMHYLDVAASLVADGDDESDVGTSCCTAGAAEEADELFLGAGNSAGRTPHPSISEHAAALSLVPVAGRPLHHGQSAGTSSGSSGGGLQA
+QLQQLQPPHGARMAGIYSDDGRRSSAELSGMGLGVATLGVGMSTA------SAGTAVISGVGGVGGVAAAATNPVTALLSPTTSYHTAGTAPALATSSGG
+GAGAALYGATGMHLALKIAGIHWWYRSRSHAAELTAGYYNVDG-----HDGYEAIVNLCARH-RANLVLTCVEMCDSQHP---AQAQCGPEGLLRQLRQL
+AARAGVQLSGENALPIFSSGGVDNDALDRIVNNMRSWPMP-----------------NNNVNSRVGISPAPSMVMPSGNGNGNGNGNGNG-N-GAHASSG
+-GN-IVCVGY----RM------------SE-S--GRMV---------------------PV------------GTAA--SAVVN----ANGNG-SGNGNG
+YGLNGASGSQSAAESGSQINGQPTSAVTPHGSTDLNGAYSTCLSPAPPEVLPSLRAFTFLR---------LVP---------------------------
+-----------------------------------EMLLPGYQSL------------------WMRFMGKL-----------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------LA----------------------------------------S
+>XP_043639661.1_beta-amylase_3_chloroplastic_Erigeron_canadensis                        
+----------------------------------------------------------------------------------------------------
+------------------------------MALTLRSSSTCFLNLKDIIKSST-------------PPPAAAALKTTTLHD-DFTATAVINNSIKPI---
+---IL--RRRLIKSSMQSEINVQYN---------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+---LA-----P---------------------------PPQK--SI------------------------------------------------------
+-----------------------------------------------MMTSSPFEGTYEEQ---------------------------------------
+---------------------------------------------------------------------------------------KEKFHALS-T---
+---S-SRHDE-SQNGSSSRVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-GAGVEGIMVDVWWGLVEKDGPGKYNWEGYVELVNMVQR
+HGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISRNPDLVYTDKSG-----RRNPEYISLGCDSL-PVLRGRTPIQVYSDFMTSFQQRFKNYLGD-VVV
+EIQVGMGPCGELRYPSYPESNGTWRFPGIGEF-------QCYDKYMKASLEAAADANGEKNWGKSGPHD-SGQYNQFPEDTGFFKR-D-GTWDTDYGRFF
+MEWYSGKLLQHGDRILGSADSIFR-GT-G-----------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------AKLSGKVAGIHWHYKTRSHAAELTAGYYNTRH-----SDGYLPIARMLAKH-DVVLNFTCMEMRDNEQ---PRHADCSPEGLVRQVKMA
+VKEARVDLAGENALERYDSGAY-----GQILKTSK-------------------SDSGNELCAFTYLRLNKRLFEAENWRELVNFVRSMS-SEGGKA-RL
+-PA--S---D-S-TRTDLY----VRFVDHK-------------------------------------------LKRL--KDDME-----IV---------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+------------------------------------------------------------------------------------L--V---
\ No newline at end of file

runs/BEAST/alignment_files/pap11_align_name.fasta

+>CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase                                                           
+MASCATLLGGEFAVTAMAGALAGGGSEERRRRMERPSAGFSESRIG-LSPM-SACPETRLTWSADVGTSAGQEYLFDIGTLRSSGATAGATAGG------
+------SFRKQRNAYCPRSRLRPVIERAP-----PYLGFCHGLGSADGDSGGASTSIPAASKG----------------STERRPFDGLLNP------RC
+SACLLLGRR--TLAMSRKRR------------------GADRSSS----GRT---------TLRTAALHPM---DHATRRWGPM-IRAVGTTTSMSTGVR
+DLVLVSSARQFAEGLMRNSR--GRISRFQNPTLTSGEAGA--AVVRHVGLPVSSSSWSL-----APLGRCAPCGDDKMKGVQQCRVSSSNTRGRAGRYAK
+EEAAAEEEEEGADDAEEEEEEEEEEEEEEEMIVGRREAYVDDAD-FDLDFG-DDVLGERDEFDDYAEATMNFGREGG---VGEGGGANG-AES-SATLRE
+LLEEAG-V-Q---------------------------------------------P-------IY--VA-GN-AEVVVTGVS-IDSRTTSPGDVFVCIVG
+--DKT--DGHLYVAEAVEKGAVAVVASKE----------EE-----VVFDGEKVKALVMVEDTSKVISALSSAVYRHPSRQMAVIGVTGTNGKTTTTYLL
+RGMYNAMGLETGLVGT------INHFVG------KKKL-------------------ESSQ--------------T--TPEAAPLHRLMKDMVDAGVSAC
+VMEASSHGLELGRVDDVDFDVAVFTNFTR--------DHMDFHKTE-EDYRSA-KGKLFDRM-VDPDRHRKVVNLDDPNADWFVARGNP-NVPVVTFGME
+--REDADVRALEVQLSLFE-TEVV--VRTPKGDIEISSGLLGRHNVYNILATVAVGIAIDAPLEDVVKGIEEVDAVPGRCELI--DEEQAFAVVVDYAHT
+PDALGRLLDSVRECGPRRLITVIGCGGDR--DRGKRPLMAKIATEKSEVTILTSDNPRTENPLDIIDDMLAGVGWSIEDYLKWG-RDG------------
+---------------------FYPPLPNGHRLYVHDMRIIAVRAAVAMGEEGDAVVIAGKGHETYQIT-----GT------ERDYFDDREECREALQHVD
+ALHA-AGIDTSEFPWRFVNQ----------------------------
+>KAG0583458.1_hypothetical_protein_KC19_3G137600_Ceratodon_purpureus                                                                        
+MALRP---------------------------CSNQLLPLQCSLLS-PS----GHNLGFSQG-CLVRNSFRLVKNG---GVGSSGG-VSVGP--------
+--------------RACGFDLRGAFGRKE-----LG-----FGLGLGLDVERGSRIGCQARRR----------------DEDTEEFDDYIDP------AK
+AEPMEAMDP--D--------------------------EEEMTKF----DRV---------VREADRVRKS-QEEEYKRTKPVF-MRAIGLG--------
+-----D--QVDIEGEEEDV------------------DTD--DTFDLVNEAVASKKAVA-----KSN-----------------GRTSGPSKAKAPVAPR
+VIEDEEEEE---LDPE----EVADLEDIDD-----AMPVELD-E-EDEEGF-INFKD--STFGGLGFDDDDGEGEDG------EEPLVE-PTY-RMTLGE
+LLDEAR-V-T---------------------------------------------P-------IS--VE-GD-LDVEITGIQ-HDSRHVIPGDLFVCVKG
+--LKS--DGHEFANQAIEKGAIAVISCT------------------EVPPTEGVKAAVVVEDTNVILSGLAGAFYGHPSKSLAVVGITGTNGKTTTSYLI
+RSMYEAMGSQVGLLGT------INYYINA-----KKKL-------------------EASH--------------T--TPDAVHLQKLMASMVHHGTDTC
+IMEVSSHAMVLERCKEVDFDVAVFTNLTR--------DHMDFHKTE-DEYKEA-KGKLFAKM-VDPERHRKIVNIDDPHASYFVEQGNP-DVPVVTFGME
+--NKNADVYPLEVQLSLFE-TELL--VRTPRGNIEISSGLLGRHNVYNILAAIAVGIAVEAPLEDIVRGIEEVDAVPGRCELI--DEEQAFAVIVDYAHT
+PDALSRLLDTVRECGPRRIITVVGCGGDR--DKGKRPMMAKIATDKSDICIFTSDNPRTEEPLDILDDMLAGVGWSMDEYCKMG-EED------------
+---------------------YYPPLPNGNRLFVYDIRTIAVRAGVAMGEEGDAVVIAGKGHETYQIV-----GD------TKEYFDDREECREALQHVD
+ALHA-AGVDTSEFPWRVPES---------------------------N
+>PTQ33238.1_hypothetical_protein_MARPO_0091s0082_Marchantia_polymorpha                                                                      
+MAGLC--------------------------SAAGLGAARTCAPAR-LQQQ-QQQRNGPHLGSDFFPSPISFARSSALSRKIVRRQFVRSEQ--------
+---------------G--IQFSLGRYGGK-----SG-----SDGSICAGLRLWSVGECRAVPK------------------NAKEFDDYIDP------AN
+AEPLEVED---D--------------------------EEGISKF----EKV---------AQEAERVRKL-QEEEYTRMKPIF-LKAIGID--------
+-----P--EDYKSAQDLQEEEEEE----ELAPEVTGAGED--DFYNVVNRAVASKRKPK-----PLNLKSAAA---R-----SFLDRDDDALDIVNDIGK
+VVSEESESE---LEEE-----EEDIVGIDD-----EEEDEEDDE-EEEEES-IELGDFADELDELGLDDFDEFDSDL---L--DDEFKP-PVY-KMTLAE
+LLDEAK-V-T---------------------------------------------P-------LS--VE-GD-LDVEITGIQ-HDSREISTGDMFVCCIG
+--HSS--DGHLYSSEAVERGASVLVVSK------------------EVTLNKSVRALVIVEDTNSILSALAGAFYGHPSQKLSVIGLTGTNGKTTTSYLI
+RSMYEAMGLTTGLLGT------IAYYINN-----RTKL-------------------DAPN--------------T--TPDAVYLQQLMAKMVSSGTEAC
+VMEVSSHALTLDRCKEVDFDVAVFTNLTR--------DHMDFHKDE-EEYRAA-KGRLFAKM-VDPEKHRKVVNIDDPNSSYFVAQGNP-AVPVVTFGLE
+--NTDADVYPLEVQLSLFE-TELL--VRTPKGNVEISSGLLGRHNVYNILAAVAVGVAVEAPLEHIVRGIEEVDAVPGRCELI--DEEQAFAVIVDYAHT
+PDALSRLLDTVRECGARRIITVVGCGGDR--DKGKRPIMAKIATDKSDVCIFTADNPRSEDPLDILDDMLAGVGWSMEEYLKWG-ESD------------
+---------------------YYPPLPNGNRLFVYDIRTIAVRAGVAMGEEGDAVVIAGKGHETYQII-----GT------EKEYFDDREECREALQHMD
+ALHA-AGVDTSEFPWRVLES---------------------------T
+>GAQ90408.1_UDP-N-acetylmuramoylalanyl-D-glutamate-2_6-diaminopimelate_ligase_Klebsormidium_nitens                                          
+------------------------------------MGSRISNQTQ-VAEQ-GLFRRRCRRA-----------QP-------LGIARAT-----------
+-----------------------------------------------------------NAADAGREDGGDEGEEEAEDDYDEEGFDDDATF------EE
+GDFDEFLEE-VD--------------------------EPE-GEG----GEI---------LEEA--ALGS-TEDRLGPSKPLSGVKAIEVG--------
+--------LVDVVKDD------------------LDLEEA--EELGTVEELEGNEGLIA-----ADE--ED-----------------------------
+-DVAEAVYTEDYEEDAGSRGELVEEEEDEGG----AAAAREQKY-AAPPLN-AVNLDVNQSVSYLDDDALDVEFDDAQEQF--LDEVEE-ADY-TIALGE
+LLENAG-V-K---------------------------------------------P-------ML--IE-GD-LDVEVFGIT-QDSRQVKEGDLFVCIKG
+--LST--DGHLYAAEAVEKGASAVIASE------------------EVLVGASCKAVVLVEDTTEILSALAGAFYREPSKKLTVVGITGTNGKTTTSYIV
+RGIIEEMGQQTGLLGT------IAYYV-G-----KKRL-------------------DAPN--------------T--TPDAIRTQQLMATMVEKDVSAC
+VMEVSSHALQLGRVKEVDFNVAVFTNLTE--------DHRDFHGNM-DNYREA-KGKLFAKM-TDPEWHRKVVNIDDPNAQWFISQGNP-DVPVITFALE
+--DESADVYPLNVVLSLFE-TELE--IRTPYGNLQISSGLLGRHNIYNVMAAIAVGLAIGAPLEAIVKGVEEVDNVPGRMELI--DEGQPFGVIVDYAHT
+PDALERLLDTVRECGPNRLITVLGCGGDR--DRQKRPVMGKIATDKSEVTIFTSDNPRSEHPYQILDDMFKGVGWELDDYLTFGSEND------------
+---------------------FYPQLGNGHRLFAYDHRAVAVRSAIAMAQEGDCVIVAGKGHETYQII-----GE------ERKYFDDREHCREALERLD
+LLRT-SGIDSSELPWRTEYGESWEDE-D--EDIPKH-----DSADIAM
+>XP_001696935.2_uncharacterized_protein_CHLRE_12g519900v5_Chlamydomonas_reinhardtii                                                         
+MLAQQL------------------------------ARSVRRP-AAPPCTS-SPCTICPVVVRQP-----------------------------------
+----------------------------------------------------ANKCHAPRIAP----------------VAPAPARQTLCAARRGRPPGG
+P----PEPTPEGPEPE-FFEDDDINYEDEAEDGEFVEQLDPHTRRLMGI---------------------------------------------------
+-----------------AEQREDV----EEAGYEEY------EEYEEAEDEGALDDAA-EADR--------------D--GI------------------
+------------------------------------AADEDVG--------------------------------EP---S--TSYPEP-PDR-AFRAPD
+LFGEAA-L-F--------------------------------------------EA-------ALWLA--AHFPNIEVTGVQ-SNPHLVTPGDVYVHHEG
+L--TD-EDQVAAVSVALEQGAVLVVAPHLPKDSTG--LHVGEDPLE--GVVPDEVPLVRVKDSTEAGSRLAAAFYETPSRNMVTVGVVGLLGKTTTSWLV
+RGILEELGQTVGLMSS------IEHAIAEDRLDEDGYLWEPLEEDPSADR-----ESSVPFKLIPYEGKYEQHYGR--RLPGLNAQKVLAGMRDRGAGVA
+VVELQADGLMLGTYDFMSLNVAVVTSLSPRPGVPAAQQPAELVAAAADEVHAAIE-LLSARLV-DPETQALVLNADDPAAEQLLERLGG-AVPVVTYGVV
+--NKGADVVAESIKSNIWE-TELI--VRTPGGRLQIITNLLGRHNVANVLAAVATGVALKAPLASIVAGIEAVEI-PGRSEVI--DEGQEFSVVVDAART
+PEALGDMLDALRAGGARQIFTVFGCSGNE--DASIRPRMGAVAHAKSDYVIITNENPRLEDPAKVVADIVAGFPDDMVNRYSAY-A--YFPFQDQGRT--
+---P------------LWFEPYLQKAQRDNKRYVMEDRYSAIRAAIGTAGPEDVVLLAGKGSEDWVEHADEDGSV------LTGWLDDRVEARNALSKLK
+YLKQIPRFSRETLPWGSRIEGLMETLAVDPAELSAAAVGGLE--GALD
+>XP_005851510.1_hypothetical_protein_CHLNCDRAFT_137921_Chlorella_variabilis                                                                 
+MQGSSKR----------------------------LLRAAAARPVL-AAGG-DAGDDLEEMRERR-----------------------------------
+----------------------------------------------------DELLRIKE----------------------------DL----------
+---------------------------DVGLNTDEDEELAGITERLLKFGYLEDTGSLDEVVPGI--GSDG-TDEEYEEV---V-AELFS----------
+---------SDDDEEEEEEEEEDS----EESEDSEE------SEEEEEEEEGDVLTAA-DRESEVAPRRKVARK---PPSDLAID--------S------
+--IVLEAQRGGTQDMRNMGMFATSSPGVGGEQGEPGANGEQEE--------------------------------AP---Q--ARFPEP-PAR-SYRLAE
+LLRLAG-Y-EEQASAQPGMLADSGRSQGPWPHRRQLAMAAAAAYWRRLSPSSIRST-------AVLQA--ASAPDVDIRNILTCNSISGGEDSLYVCVPS
+A--DGQCDGHDWADEASEMGAVAVIAGRPLP--D------------------ALLPVVVVDDVAAALGSLADAFYERPSRRMRTVGVVGSYGKTTTAWLS
+RGMFEETAERCGMIGTI------EYALEEVRLTEEGEVWVAEEQDVTLQAGGGLRDCSSPFHITPYEGKYPQVP-T--TPDALHMQKALAGCADRGASVA
+LVECDPASLGDGRADHVDFDVLVYTNSY--------AEKEAGAEGGSQACHDR-VAELFRRVQGDVERQRAVINIDDPLGAELAQAAAAAGATVLTYSAD
+--SRDADIYAEKAKSSIWE-TEVL--VNTPLGRLQIITPLLGRSNVCNVLAAVSTGIACGVPLKNIVAGIEAVDIIPGRCEII--DEGQPFSVVVDSAST
+PEQLSRLLDEVKEAGSKRVLLVFGCPGT-----------TSMAHYKGDAIFITNDSPGASWPSDVIADMVGGLPTEVTNKYTGT-A--YPFLQDPHRV--
+---P------------HWFQKYMLQYQSVVGVYVIEDRFQAIRVAIGMARARDVVVVAGKGHIDWQEYWDGAEFDLEERTTLKSWFDDRVECRNALSKLP
+YLSGIKDLNTDVLPWTRYPEERDIL-SL--EGISEAPVGDF------R
+>XP_024517730.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic_Selaginella_moellendorffii 
+-----------------------------------MALAAFSCPLP-LSRV-LAQPRAGWNG-----------------ARVCSDRSVAVCAT-------
+--------------RSRG----------------------------------------RKPRR----------------GGDGEGEHRYADS------AG
+NDPPEAEGP--E--------------------------E----AF----QPR---------KNGGPDQDKA-AVNGVANSSSMF-NKLKDLG--------
+---------------------------------------------ERYEASKVSKRRAA-----NVV-----------------VKSSEES---------
+---DGSEEE----EAK----DESAQASIPE-----EAPPPPKVK-VDKDD---------PSFN-LELG-------EL---Q--ESVIKE-PRF-KMTLTE
+LLDEAK-V-V---------------------------------------------P-------LS--VE-GD-LDVIISGIH-HDSRQVNSGDMFVCCIG
+--ETS--DGHSFVPQAAEQGAVVIVATK------------------EVEIGESVKAVVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKTTTSYLL
+RSIYESMGLKTGLIGT------ISYSIHG-----KHKQ-------------------DAPH--------------T--TPDAVYLQKLMATMVHNRTEVC
+VMEVSSHALAQDRCKEIDFDVAVFTNLTR--------DHMDYHENE-DSYKEA-KGKLFASM-VDPARHRKVVNIDDPNAGYFVSLGNP-KVPVVTFGME
+--KS-ADVHPLDIQLTLFE-TNVL--VKTPRGNIEISSGLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELV--DEEQPFAVIVDYAHT
+PDALSRLLDTVRECGPRRIITVVGCGGDR--DRGKRPVMAKIAAAKSEVCIFTSDNPRSEDPLEILDDMLAGVGWSMDEYLKCG-ERS------------
+---------------------YYPPIWNGNRVFVYDLRKIAVRAAVAMGEEGDAVVIAGKGHEKYQII-----GK------ERKYHDDREECREALLHVD
+MLHA-SGIDTSEIPWKFPGHK--------------------------L
+>GJP33877.1_hypothetical_protein_CLOM_g18381_Closterium_sp._NIES-68                                                                         
+MSFAASSAVIS--------------------PSTAAFPPLMRAQDR-SAQP-RPRGPPPVPATSASASASAAASASPSPAMRRHAPQATSQR--------
+-----------------------------------------------AKPRGARRRVACQAGS----------------GRGEGSGSEFPNP------AE
+LPPKAAEEE--A--------------------------RRDGESR----AEM---------IRAEAIKLREEEERRLYGEPGAA-PRELVEA--------
+-----A--VAEEEAEGEADG----------------EGEGLMKKVEASSQSVA---SAG-----GSS----------------LTRGSLREQREEGE---
+---VEEEEEIEVEEEEEEEGSEVDEEEYEE-----EEEGEDEEDEEEEE-EEEE-EEEEEEDEEDEEASFDMRMVTA---M--AEAGEEGGAG-ALTVAE
+ILEDAG-V-E---------------------------------------------P-------LD--VD-GD-LTVEVTGIQ-ADSREVKPGDLFVCVVG
+--QQT--DGHMYVGDAAERGAAAVVLSRG-----------------DVEVDERVDAVVQVEDTQGVLSALAGAFYDHPSEKLAMVGLTGTNGKTTTTYLI
+KSIYDAMGVSAGLLGT------ISYKIKD-----QE-L-------------------EAPN--------------T--TPDAILLQKLLSQMVDAGCEAC
+VMEVSSHALTLGRVADVDFDVAVFTNLTR--------DHLDFHGTM-EEYRDA-KARLFDAM-TDASRHRKVVNLDDPHAEFFMSRGGA-DVPTITFSLE
+--NTQADVHALEVALSLFE-TELL--VRTPRGDLEISSGLLGRHNVSNILAAVAVGIAINAPLEALVRGLEEVDAVPGRAELV--DEEQAFAVVVDYAHT
+PDALSRLLDTVRECGPRRIITVVGCGGDR--DRGKRPMMAKIAAEKSDVTILTSDNPRTEDPLGILDDMLAGVGWSMEEYVEYN-QAG------------
+---------------------FIPPLPSGNRLYVYDIRGIAVRAAIAMADDGDAVVVAGKGHETYQIV-----GQ------EKTYFDDREECREALQHVD
+ELRT-H-FDTSQLPWRILDMSDMKVI-P--DPDAN------A-----Y
+>KAH7279093.1_hypothetical_protein_KP509_37G004600_Ceratopteris_richardii                                                                   
+MQAS----------------------------------CYQR-FEP-LEIS-RPHCCAFFHT------------------FRSSFYQVSFKD--------
+-----------------------LSS--------------------------------QQFFR----------------ACFAMSSKEIPNP------SE
+ADPPEVEDFDEE--------------------------APDVTKF----DRI---------WVKSQEARKK-EEKYYQENRAVF-REAIGLD--------
+-----P--NGEDEDEDEDKIEGPEIISLEDREAASMSEDG--DFFSAVDAAVASLKRRE-----RAAKQGKGML----------NKIDSEDIDKVKK---
+-----EENTSSIPKRKG-LVEVEAAEDAEGEEL--EDDREAEID-DDEDIQE-EGIEEEDDVLTDPSFDLDFT-LEE---D--LEQIKE-PKF-SMTLSE
+LLDEAR-V-V---------------------------------------------P-------IL--VD-GD-EDVEITGIQ-WDSRQVMPGNMFVCGIG
+TPSSS--TENPPLTEAIEKGAVVVVASME----------V------SVQENVRT---VLVEDTVTALSSLSAAFYRNPSKEMSVVGICGSNGKASTSFLV
+KSMFEAMEKKTGLISS------IANYVFG-----KKKA-------------------DITN--------------P--DLDAVSLHKLLATMVHNDAGAC
+VMEVG----EVSDSLNLDFNIAVFTNLMQ--------LNDSAERMD-EKHSHS-ISNLFAKM-VDPKRHAKVVNLDDSYAPFVIAQGSA-DVPVITFSMN
+--NRDADVFPLDVQLSLFE-TDML--VRTPRGNVEISSGLLGRSNVYCILAAVAVGIAINIPLEMIVQGIEEVDAVPGRCELI--DEEQAFAVIVDHART
+PDTLSRLLDTVRECGARRLITVVGCEGEC--ERGKRPIMAKIASDKSEVSILTSNNPRNEDPLYILDDMLAGVGWTMKEYLEHG-DRD------------
+---------------------YYPPLRNGNRLFLYDDRAIAVRAAVAMGEEGDAVVITGKGHEAFQLI-----GD------KKEYLDDREECREALQHVD
+ALHA-AGIDTSEFPWRLPESH---------------------------
+>KAH9541295.1_hypothetical_protein_CY35_14G055500_Sphagnum_magellanicum                                                                     
+MAMTALWWWCP--------------------AGSRLCTPPLPAALS-LPST-SPFSRRRSNSREWVSFSSSLKTFGRRRGRRSPSSLQSVSFSPASIACC
+KDSLLVTNPALLVGSTRGIQLQVVAPPRANGDDCYC-----HCCSRTCGLKHSSSVKCRAKQP----------------RRQRSEFDDYIDP------AK
+AEPFEAEDE--E--------------------------DEEMTKF----DRV---------AREAAKVRKQ-QEAEYKRTKPIF-MKAIGLA--------
+-----A--DAEEEEEEEEEE--EE----DDDLPEELLDPD--DDFFNISQAVSIKKKQA-----KASQKKNKA---AVVEFENLARTPPKTGPRIPLSSL
+RLSEDDDEEDNLLEEEDEEQEQAELEEEEN-----VADVQPEAD-EEEAAE-EEYG---AAFGGLDFDGDDDDDGEE------DEEMSE-PHY-RMTLGE
+LLDEAR-V-T---------------------------------------------P-------IS--IE-GD-LDADITGIQ-HDSRQVSPGDLFVCVKG
+--LSL--DGHDFATQAVERGAVAIVASGE----------IA-----ALSASEGLKAIVLVDDTNAILSALAGAFYGHPSQSLAVVGITGTNGKTTTSYLL
+RSMYEAMGLQTGLLGT------INYFINN-----KKKL-------------------DAPN--------------T--TPDAVYLQKLMATMVHSRTDAC
+IMEVSSHAMVLERCKEIDFDIAVFTNLTR--------DHMDFHKTE-DEYKAA-KGKLFAKM-VDPERHRKVANIDDPNAAYFINQGNP-DVPVVTFGIE
+--SVDADIFPLEVQLSLFE-TELL--VRTPKGNIEISSGLLGRHNVYNILAAVAVGVAVEAPLEDIVRGIEEVDSVPGRCELI--DEEQAFAVIVDYAHS
+PDALSRLLDTVRECGPRRVITVVGCGGDR--DRGKRPIMAKIATDKSDVCIFTSDNPRTEEPLDILDDMLAGVGWSMEEYVKWG-HDD------------
+---------------------YYPPLPNGHRLFVYDIRSIAVRAAVAMGEEGDAVVIAGKGHETYQII-----GK------AKEYFDDREECRDALQHVD
+ALHA-AGVDTSEFPWRVPE----------------------------S
+>XP_024364396.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic-like_Physcomitrium_patens  
+MALQC---------------------------AHKLVVPSQYPPVS-PSES-TGHSLRFSQS-CLVKSSVQLRQNGTSFGRGVQRWRLSVAA--------
+--------------EALG-NVKGGFGRRS-----LG-----HRSSVE-GVNSRDLVRCRTRRR----------------NDDTKEFDDYINP------AK
+AEPMEAMDA--E--------------------------DEDMSKF----DRV---------VREAEKVRKS-QEEEYKRTKPVF-MRAIGLG--------
+-----D--QVGEEEEEEEDE--EE----IDE-EDDISDFD--DTFELVDAAIASKKSQT-----KSN-----------------GRKPAASKPK------
+PVIDEDEEE---LDPE----EVADLEDIDD-----AIPLDEELD-EDEDGF-INFKD--ETFGGLRFDDDEVYNGDE------GEAMME-PTY-RMTLAE
+LLDEAR-V-T---------------------------------------------P-------VA--VE-GN-LDIEITGIQ-HDSRLVIPGDLFVCVKG
+--LKS--DGYEFAHQAIEKGAVAIVSSS------------------EVLPAEGLEASVVVEDTNILLSGLAGAFYGHPSKNLAVVGITGTNGKATTSYLI
+RSIYEAMGLQAGLLGT------INYYING-----KKKL-------------------EATH--------------T--TPDAVHLQKHMASMVHHGTDAC
+IMEVSSHAMHLGRCKEVDFDVAVFTNLTH--------DPEDFHKSE-DEYKEA-SGKLFAKM-VNPEKHRKIVNIDDPQSDYFVTQGNQ-DVPVVTYAMG
+--NKNADVYPLEVQLSLFE-SELL--VRTPRGNLEISSGLLGRHNVYNILAAVAVGIAVDAPLEDIVRGIEEVDAVPGRCELI--DEEQAFAVIVDHANT
+PDGLSRLLDTVRECGPRRIITVLGSQGDR--DKAKRPLMAKIATDKSDVCIFTSDNPRSEDPLDVIDDMLAGVGWSMEEYCKWG-EDD------------
+---------------------YYPPLPNGHRLFCYEIRTIAVRAGVAMGEEGDAVVIAGKGHNTYEII-----GD------NKEYFDDREECREALQHVD
+DLHA-AGVDTSEFPWRVPES---------------------------N
+>WP_194018526.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Synechocystis_salina                                  
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------MVKLGQ
+LLASVPEVVT---------------------------------------------AAPWLAQEPD--RY-PA-LGEMVRGLS-TNSHACPPGTLFIGMPG
+--TRV--DGGEFWSGALGAGAIAAVVSEKALQ---------------KFPPQNGECVIAVPDLVPVCAGIAAAFYQHPARTLQLVGVTGTNGKTTTSHLI
+EYFLNQQQRASALLGT------LYTRWPG-----YQKT--------------------ATH--------------T--TPFATDLQRQLAEALQAGNQYA
+VMEVSSHALAQGRVLQCGFACAVFTNLTQ--------DHLDFHGTM-ENYFAA-KALLFEG---QYLKGRAVINKDDVYGQKLIDRL-P-SAQVYTYSVT
+--DSSADFYTKDLDYQPTG-VQGI--LVTPQEELPFQSPLVGQFNLANVLAAIASGLHLGLDPGAMVKDLLDFPGVPGRMEQVKIRPDQDISVMVDYAHT
+PDSLENALKAARPFIPGRLICVFGCGGDR--DRTKRPLMGNIAAQLADLAVVTSDNPRTEDPEQILADVVQGIDLEIKPW--------------------
+---------------------------------IIGDRATAIHKAIREAKPGDGVLIAGKGHEDYQIL-----GT------EKIHFDDREQAREALILRY
+-S----------------------------------------------
+>XP_021969154.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic_Helianthus_annuus          
+-MFS----------------------------------SLSS-PFS-LSLS-KPHLHPPLRH------------------RLPPFFHRT-----------
+-----------------------------------------------------------NLTL----------------FAINRDGKHYPNP------AD
+IDPPEAPED--T--------------------------VHGVSKF----KQL---------DLRIARARKA-QDAQYEKDQSIF-LKAIQDV--------
+-----E--DAPDESAST----------------ANDDSEG--DLYSEIDDSIAL-KRKE------FVKKGLLKP----------NPKKDESKEEIKD---
+----EVADELQPQEEDD-LDEIDELEELKG--V--GEDSEAEN--SDLDI-D-DDLGPGNSS-VKSEFESEFDAFRK---G--EVRIVE-PKC-KMTLAE
+LLDESK-V-V---------------------------------------------P-------VS--VL-GN-LEIEITGIQ-HDSRLVEPGDLFVCCVG
+--KKT--DGHLFLTEADKRGAVAVVASKE----------I------DIEETLGCKALVLVEDTSSVLATLAASFYKHPSKNVAMIGITGTYGKSSSAYLI
+KGMYEVMGLRTGMITN------VAHYIHG-----ENQL-------------------ETKN--------------T--IPDGVSRQKLMAKMVHNGTEAL
+VMEASSHELESGKCDEVDFDIAVFTNLST--------DHLDTHGSE-EEYKNA-QLKLFGRM-VDPTRHRKVVNIDDASAPLFIAQGNQ-DVPVVTFALE
+--DKKADVHPLQFDLSLFE-TQVL--VDTPKGILEISSGLLGRQNIYNILAAVAVGIAVEAPLEDIVRGIEEVDVVPGRCELI--DEEQTYGVVVDYANT
+PDGLSRLLDNVRELNPKRIITVIGCPGET--ERGKRPVMTKIATDKSDVTMLTSDNPRNEDPLDILDDMLAGIGLTMQDYLKHQ-ADD------------
+---------------------YHPPLANGHRLFLHDIRRVAVRSAVAMGEEGDIVVVTGKGHETYDTV-----GD------TTEFFDDREECREALQYVD
+ELHQ-SGIDTSEFPWRLPESY---------------------------
+>OAP16898.1_PDE316_Arabidopsis_thaliana                                                                                                     
+MAFT----------------------------------FLSPHPVF-LSLT-GTTSSFSYKP------------------VLLPFSRNSR----------
+-----------------------------------------------------------TLTV----------------AAGPARRNSYPNP------AD
+DDPPEAPED--S--------------------------MHGVSKF----QQI---------QRQAARARKL-EEEDFEKNRNTY-LSAIADV--------
+-----E--DAAETGR------------------DDEESGG--DLFSDIDRAISM-KRSE------FVKQGLLKP----------NPPKTASLKKIGEEGN
+EEEGDVTDDVDELDEEE-VVDLDEIDKLTG--L--TEISDEEDW-VDEEG-N-TRINKKKEFGSDHQFEFDLDDFGE---S--KARIVE-PKF-KMSLAE
+LLDESK-V-V---------------------------------------------P-------IS--VY-GD-LDVEITGIQ-HDSRGVSAGDLFVCCLG
+--SEN------FLSEADKRGAVAVVASKE----------I------DIEDTLGCRALVIVEDTNAVLAALASSFYRHPSKNMSVIGVTGTDGKTTTTYLI
+KSLYEAMGVRTGMFST------VSCYIHG-----DNKL-------------------DTPN--------------ATMNPDAVLVQSLMAKMLHNGTESL
+VMEASPQELALGKCDEVDFDIAVFTNLTR--------ENTDFRGTD-EEYRDA-EAKLFSRM-VDPERHRKVVNIDDPNAAFFVQQGNP-NVPVVTFAME
+--NTKADVHPLKFELSLFE-TQVL--VNTPQGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELI--DEEQAFGVIVDHANT
+PDGLSRLLDSIRELKPRRIITVIGCEGEN--ERGKRPLMTKIATEKSDVTMLTSDNPRNEDPLDILDDMLSGIGWTMQEYLKHG-EHD------------
+---------------------YYPPLANGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAYQLE-----GE------KKEFYDDREECREALQYVD
+ELHQ-AGIDTSEFPWRLPESH---------------------------
+>MBF2019582.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Hydrococcus_sp._C42_A2020_068                           
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------------------------------------------------------------------------------------------MKLRD
+LLAKVSGISQ---------------------------------------------I-------P---EH-PA-LDKEVKGIS-TNSHACQLGDLFIGMPG
+--TRV--DGGEFWQSALEAGAIAALISPQSAA---------------KYPPTPNACVIQVADPVSACADLSAAFYGYPSQQLRMVGVTGTNGKTTITHLI
+EFFLNQSQLPTALLGT------LYTRWAG-----FQQT--------------------AVH--------------T--TPFAAQLQAQLAAARDAGNQYA
+VMEVSSHALAQGRVKGCSFDVGVFTNLTQ--------DHLDFHKDM-EDYFSA-KALLFSP---DYLKGRAIANLDDSYGKRLIEAL-D-SDKVWSYSVS
+--NPAADFYTAQLNYESTG-VSGV--MHTPVGQISFRSPLVGQFNLSNLLAAVAAVLHLGLNLEIVIEQLLKFPGVPGRMERVQISENQDIGVIVDYAHT
+PDSLENLLKAARPFISGKMICVFGCGGDR--DRTKRPIMGKIAAELADVAVVTSDNPRTEDPKRILQDIVAGIPASVKPI--------------------
+---------------------------------VICDRATAIHQAIQNAKPGDGVVIAGKGHEDYQIL-----GT------EKIHFDDREQAREALSIRL
+-G----------------------------------------------
+>WP_190370564.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Anabaena_sp._FACHB-1237                               
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------------------------------------------------------------------------------------------MKIRE
+LLAVINHLEY---------------------------------------------S--------------KI-ADVEVTGIK-TNSHACTTGDLFIGMPG
+--TRV--DGGEFWQSAINAGAVAAIISPEAAL---------------KHPFKPSDPVIVVENINRLCAEVARAFYGYPGRKLKLVGVTGTNGKTTTTHLI
+EYFLNQASLFTALFGT------LYTRWSG-----FSQV--------------------ATH--------------T--TPFAVDLQQSLSEAVNAGCEFG
+VMEVSSHSLAQGRVFGCGFDVAVFTNLTQ--------DHLDYHKDM-EDYFAA-KALLFSD---DYLQGRAIINADDEYGQRLIARL-N-KQQVWTYSVN
+--NASADFWMSDLLYQPNG-VQGI--LHSPVGDVSFNSPLVGQFNLENLLAAIAAVVHFGIDLQLIADQIPHFSGVPGRMERVQITPKQNISVIVDYAHT
+PDSLESLLKAARPFIPGKMICVFGCGGDR--DRTKRPKMGKIAAELADIVVVTSDNPRTENPQKILEDILAGIPDTVQPI--------------------
+---------------------------------VMSDRATAIKTAILQAQPGDGVLLAGKGHEDYQIL-----GT------EKIHFDDREQAREALKQKM
+LV----------------------------------------------
+>WP_190950786.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Nostoc_punctiforme                                    
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+-----------------------------------------------------------------------------------------------MKLRE
+LLTAVDSVEQ---------------------------------------------L-------P---SHPAL-GDAEVRGLK-TNSHACGVGDLFIGMPG
+--TRV--DGGEFWPSAIASGAVAAIISPQAAQ---------------KHPPTDEAVVISASNITQACAQIASAFYGYPGQKLKLVGVTGTNGKTTTTHLI
+EFLLNKANLATALMGT------LYTRWPG-----FEQT--------------------AVH--------------T--TPFAVELQQQLAEAVNAGNEFG
+VMEVSSHALAQGRVLGCKFEVSVFSNLTQ--------DHLDYHKDM-EDYFAA-KALLFSP---EYLKGRAIINADDSYGERLIASL-N-PEQVWSYSVN
+--NNNADLWMSDLSYEPNG-VSGT--LHTPKGDVAFRSPLVGQYNLENLLAAVGAVLHLGLDLQLVASVISEFPGVPGRMERVQISSQQDISVIVDYAHT
+PDSLENLLKAARPFIPGKIICVFGCGGDR--DRTKRPKMGKIAAELADVAVVTSDNPRTENPEKILEDILAGIPQTVQPK--------------------
+---------------------------------VIGDRAIAIRTAILQAQPGDGVLLAGKGHEDYQIL-----GT------EKIHFDDREHAREALQARL
+-G----------------------------------------------
+>WP_211627413.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Leptolyngbya_sp._7M                                   
+----------------------------------------------------M-----------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------------------
+----------------------------------------------------------------------------------------S-GIP-L-----
+-TILAE-K-L--------------------------------------------NA-------SL--F--GKS-DGDVTNVT-HDSRQASEGTIFVAIKG
+S--TV--DGHRFVGDVMRRGAAGVISEFEAPD-------------------AFDGAWLQVANARVALAKAASLVNDDPSHKLDLIGITGTNGKTTTTYLC
+YALAEAEGIKPAMLTT------VEYRIGDRTE--------------------------------------EAVR-T--TPEASDTNRFLKQAVEEGCGFA
+AMEASSQAIDLHRCDWLRFRVAIFTNLS--------RDHLDYHLTM-ENYFDA-KKKLFDGRL-GERPGSCVVNIDDDWGIRLADELRANGQKVMTFSQN
+L-DKNADLSGDDINVSLLQGTSFL--LKTPIGERKITSPLVGRPHVYNMLAASAAALELGYGLDSIVKGISRCVGAPGRFERV--SHPGNFAVIVDYAHT
+DDALLNTLKTAKELATARIITVFGCGGDR--DKTKREPMGRIAGEYSDLAIITSDNPRTEDPLKIISEIEVGVKASGGNY--------------------
+--------------------------------VAISDRREAIRLAINAAAPNDVVIIAGKGHENYQIIGND-----------KFHFDDREVALEAIEDRK
+D----------------------------------------K------
+>QDZ19900.1_UDP-N-acetylmuramyl-tripeptide_synthetase_Chloropicon_primus                                                                    
+MATCRQ---------------------------------------G-LGGP-RGRRRLVLDGKGR-----------------------------------
+-----------------------------------------------------------V-------------------------------PA-------
+----------------------------------SSSPRRGRTT----SGSR------------------------------------------------
+--------------------------------LRGG------FPVRR------------VLEG--------------T--R-------------------
+-------------------------------QRAERPTARVSAA-SEKSS------------------------SEQ------PAGAVV-PRV-S-----
+-VALSD-I-L--------------------------------------------P--------EA--DG-PAA-QLQVENLS-NDSRVIGSNCVFFCIEG
+T--QN--DGHDFAAQAAENGAIAVVASKQVDL-E-----------------GLDVPVLFVEDTQSRLAAASKAFYGDPSSKLKTVAVTGTNGKTTTTWLV
+RGILEEAGFITGMVGT------VEYALAEHRLDSEGKIWESGEEDPTLQM-----QQTLPAHIVPYFGKYEVQN-T--TPDALQVQKIMASMVNQGGEAV
+VMEASSHALAMGRCDNVDVNVGIFTNLS--------REHMDFHGDM-DSYEQA-KLRLFELIS-T--NGTGVVNLDDPVSASFIEVARRRGLKVLTFSAN
+A-SSGADITCLSAELSLFQ-TDMVVGVRATGSEVEITSSLLGHANVSNILGAVAAGVAMGYPNDVIAGGIQSTEFVPGRYELI--NEGQDFAVLVDYAHT
+PDALANVLDDVKAMGAKRVITVFGCGGCR--DTGKRPLMGKIAHDKSDVVFVTSDNPRTENPDVVIDDIVSGFSAELYEKFQVDKELGLHWLQDIHNLDP
+VYIPETTTRRWEKFKYIGNRSRAQYLQNAVRRYVVQERYYAIRLAIGMAEEGDAVVIAGKGHEDYQILANDDYQA------VKSWFDDRVESYAALQEMV
+KIQA-AGWRTDELPWTWGKPELP------------IDPDDIE------
+>KAA6418459.1_MAG:_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_Trebouxia_sp._A1-2                                                          
+MLAHYA-----------------------------------SQPQA---WK-QEHAHRPRKRQRR-----------------------------------
+----------------------------------------------------CTRSHAVE----------------------------QSDAAL------
+DNSPDIESNP-VDVQSLATD----N---A-D--LTDVDLDAI--IS------------------------------------------------------
+--------------------QGSF----DQVSTGSQ------DWYSELDKT-----ST-SIVP--------------Q--DI------------------
+------------------------------------EPQDDEE--------------------------------DP---D--ASYPER-PSR-SYTLAS
+LLKLAD-I-S--------------------------------------------LP-------EDFGE--DEL-EVAITGLQ-NRPHKVQAGDLYIHITK
+P--DE--DVWGCVHEALQRGASAVIAGDIFEAEE-----------------DLEVPVMLLPDCLAAQQRLAIAFYDNPSTKMTVV---GSTGKTTTSWLI
+RGMFDELDKSAGLIGT------VEYGIDEFLMTEDGDLWKRDEPDPTLQR-----ESSVPNCLTPYCGKYEVPE-T--LPDGLHVHKIMAGQADRGAAAC
+VLECTTSGLKEGRCAYVDFDVAVFTNIL--------QEKVDAFGGI-APYLEA-QGSLFLKLK-DPNRQRAVVNSDDPYADDM-KRFAA-AVPVVTYAIS
+--DRSADVYAEKVVMGIWE-SEIT--VRTPIGHLRIITPLIGRNNVYNVLAAVATGLSINVPLKTIVAGVEATEVVPGRTEYI--DLQQNFQVLVDSANT
+PGALNRLLEDVRLCGARKILLVFGCEGEE--DKAKRPYMGEIAHYKADTVIMTNQNQRSEAPEQIIQDIITGFPDEILDKNARRPWA-GGFLQDPCRV--
+---S------------HTVREFLFYHQNVWRRYVCEDRYTAIRWAIAAAQKGDVVIVAGKGDQDWTEVADGRGGS------IRGWLDDRVECRNALSKLY
+RLDTIRSMDRTEIPFVVMGEREPRF---------WEWGK--------K
+>PNH05610.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Tetrabaena_socialis                                       
+MLVKHG-----------------------------LG---RPP-ASAHSRAVTSCVPCPLHRAPL-----------------------------------
+----------------------------------------------------ASVGLACPAPH----------------VESGRKLSVVAKARRGRPPAQ
+PEPDEPGPGPDLPDDE-LFL---DDEFDEGEDTAYAEELDPMSRRLV-----------------------------------------------------
+--------------------EPDQ----PEPDWDDD------GEYEEAEDE---DEAT-ETDR--------------D--GI------------------
+------------------------------------AADGDAG--------------------------------EP---S--TSYPEP-PDR-EFRASD
+LFGEAG-L-M--------------------------------------------DA-------ALWLA--SRYPDVGVTGVQ-SNPHLVVPGDVFVLHPG
+L--TE-DDDLYAIGAAVEKGATVVVAPTLQPDDINVEPWSGADPLKEPGMLPDDLPVVRMEDTSAAGSMLAAAFYGAPAREMVTVGVLGEHGKTTTAWLI
+RGVLEELGQTVGLMSN------IEHAIAEDRLDEDGYLWEATEEDPSVDR-----ESSVPFKLIPYEGKYEQFYGQ--ALPGLNAQKMLAGMHDRGAKVA
+VLEMGIPSLVIGTFDFVDINVAVVTSLPPTKPAPGEQQGRDAAKASSSEAAELIMGTLAVKFR-DSDAQVLVLNLDDPQAAGFLKRLDG-VVPVVTYSLT
+--NSKADVTAESIKSNIWE-TEVL--VKTPGGRLQFIINLLGRHNVSNLLAAVATGIALKAPLTSIVAGIEAVEI-PGRSEVL--DEGQDFSVVVDAART
+PEHLAAMLEAIRQGGAKQIFTVFGCSGHE--DPTLRPRMGAVAHAKSDYVIVTNESPRLEDPAKVVADIVAGFPDDMVNRYSMY-A--YFPFQDQGRT--
+---P------------LWFEPYLQKAQRDNKRYIMEDRYSAIRAAIGTAGPDDVVLLAGKGHEDWVEHAGEDGDV------LTGWLDDRVEARNALSKLK
+YLKQIPAFNRDTLPWGSRIETLMETLSVDPGDFSRGLPTD-------E
+>OUS46025.1_putative_UDP-N-acetylmuramoylalanyl-D-glutamate--2_6-diaminopimelate_ligase_Ostreococcus_tauri                                  
+MGAGR---------------------------------------------------RRGGGS--------------------------------------
+---------------------------------------------------------TRRA-------------------------------GRT-VG--
+----------------------------ARW---------------------------------------------------------------------
+--------------------------------TREG------DGVDHGRAG----ARLEVVRA--------------S----------------------
+----------------------------------------------------------------------------A---A--NA--DA-EVDAEALLRE
+IFADAE-V-D---------------------------------------------A-------EWYGVD-EDE-DVEISGIA-NDINALLSGDLFVCPVG
+G---A--AGASLAREAVAAGAVAIVASERVE--G-----------------VADVPCAVVANVDEALADIARVFYGDPSTALTAIALTGAVGKTTTSYLV
+KSVFEAADIKMGLVGSNGNYVRVDFEEDDLKLTTQGGVWESDEEDTTRDR-----TSTAPGWLAPYRGKYEFEE-L--GADALQFQQLTAGIADNGANAA
+VMEVSAEQVRRKATRGMNFDIVALTSFE--------GARKNYNGAD-SEYSSF-VADVFKVLE-NAETQRGVINIDEEDAD-L-CREYASGVPVVTYSTQ
+IGNTAADVYPARVDFSLFE-TAIS--LSTPAGNVEVVLGLVGEHMIGPICCATAIGLAAEISLDVIAAGLEACEVIPGRMELV--DMGQDFSVLVDNANT
+PEGIERVIQSVRAANCRRVITVIGCEGDMGDERGERAVIGKVAHDMSDVLFITNDSPKTEDPYKILDDICGGFRNEIYENDKIKDEALFPFLKDMYEV--
+---H------------ENAQYECMRLQNLVRRYVMVDRFHAIRAAIGMAERDDVVLILGRGSKDYFVVGRE-----------KHWFDDVVEARDALQKIG
+AIQD-SGVDTHNLPWQSLAARATN-----PGAGN--LL---------G
\ No newline at end of file

runs/BEAST/alignment_files/pap11_clustalw_aln.txt

+CLUSTAL W (1.83) multiple sequence alignment
+
+CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase  MASCATLLGGEFAVTAMAGALAGGGSEERRRRMERPSAGFSESRIG-LSPM-SACPETRLTWSADVGTSAGQEYLFDIGT
+KAG0583458.1                                                                      MALRP---------------------------CSNQLLPLQCSLLS-PS----GHNLGFSQG-CLVRNSFRLVKNG---G
+PTQ33238.1                                                                        MAGLC--------------------------SAAGLGAARTCAPAR-LQQQ-QQQRNGPHLGSDFFPSPISFARSSALSR
+GAQ90408.1                                                                        ------------------------------------MGSRISNQTQ-VAEQ-GLFRRRCRRA-----------QP-----
+XP_001696935.2                                                                    MLAQQL------------------------------ARSVRRP-AAPPCTS-SPCTICPVVVRQP---------------
+XP_005851510.1                                                                    MQGSSKR----------------------------LLRAAAARPVL-AAGG-DAGDDLEEMRERR---------------
+XP_024517730.1                                                                    -----------------------------------MALAAFSCPLP-LSRV-LAQPRAGWNG-----------------A
+GJP33877.1                                                                        MSFAASSAVIS--------------------PSTAAFPPLMRAQDR-SAQP-RPRGPPPVPATSASASASAAASASPSPA
+KAH7279093.1                                                                      MQAS----------------------------------CYQR-FEP-LEIS-RPHCCAFFHT------------------
+KAH9541295.1                                                                      MAMTALWWWCP--------------------AGSRLCTPPLPAALS-LPST-SPFSRRRSNSREWVSFSSSLKTFGRRRG
+XP_024364396.1                                                                    MALQC---------------------------AHKLVVPSQYPPVS-PSES-TGHSLRFSQS-CLVKSSVQLRQNGTSFG
+WP_194018526.1                                                                    --------------------------------------------------------------------------------
+XP_021969154.1                                                                    -MFS----------------------------------SLSS-PFS-LSLS-KPHLHPPLRH------------------
+OAP16898.1                                                                        MAFT----------------------------------FLSPHPVF-LSLT-GTTSSFSYKP------------------
+MBF2019582.1                                                                      --------------------------------------------------------------------------------
+WP_190370564.1                                                                    --------------------------------------------------------------------------------
+WP_190950786.1                                                                    --------------------------------------------------------------------------------
+WP_211627413.1                                                                    ----------------------------------------------------M---------------------------
+QDZ19900.1                                                                        MATCRQ---------------------------------------G-LGGP-RGRRRLVLDGKGR---------------
+KAA6418459.1                                                                      MLAHYA-----------------------------------SQPQA---WK-QEHAHRPRKRQRR---------------
+PNH05610.1                                                                        MLVKHG-----------------------------LG---RPP-ASAHSRAVTSCVPCPLHRAPL---------------
+OUS46025.1                                                                        MGAGR---------------------------------------------------RRGGGS------------------
+                                                                                                                                                                  
+
+CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase  LRSSGATAGATAGG------------SFRKQRNAYCPRSRLRPVIERAP-----PYLGFCHGLGSADGDSGGASTSIPAA
+KAG0583458.1                                                                      VGSSGG-VSVGP----------------------RACGFDLRGAFGRKE-----LG-----FGLGLGLDVERGSRIGCQA
+PTQ33238.1                                                                        KIVRRQFVRSEQ-----------------------G--IQFSLGRYGGK-----SG-----SDGSICAGLRLWSVGECRA
+GAQ90408.1                                                                        --LGIARAT----------------------------------------------------------------------N
+XP_001696935.2                                                                    ------------------------------------------------------------------------ANKCHAPR
+XP_005851510.1                                                                    ------------------------------------------------------------------------DELLRIKE
+XP_024517730.1                                                                    RVCSDRSVAVCAT---------------------RSRG----------------------------------------RK
+GJP33877.1                                                                        MRRHAPQATSQR-------------------------------------------------------AKPRGARRRVACQ
+KAH7279093.1                                                                      FRSSFYQVSFKD-------------------------------LSS--------------------------------QQ
+KAH9541295.1                                                                      RRSPSSLQSVSFSPASIACCKDSLLVTNPALLVGSTRGIQLQVVAPPRANGDDCYC-----HCCSRTCGLKHSSSVKCRA
+XP_024364396.1                                                                    RGVQRWRLSVAA----------------------EALG-NVKGGFGRRS-----LG-----HRSSVE-GVNSRDLVRCRT
+WP_194018526.1                                                                    --------------------------------------------------------------------------------
+XP_021969154.1                                                                    RLPPFFHRT----------------------------------------------------------------------N
+OAP16898.1                                                                        VLLPFSRNSR---------------------------------------------------------------------T
+MBF2019582.1                                                                      --------------------------------------------------------------------------------
+WP_190370564.1                                                                    --------------------------------------------------------------------------------
+WP_190950786.1                                                                    --------------------------------------------------------------------------------
+WP_211627413.1                                                                    --------------------------------------------------------------------------------
+QDZ19900.1                                                                        -------------------------------------------------------------------------------V
+KAA6418459.1                                                                      ------------------------------------------------------------------------CTRSHAVE
+PNH05610.1                                                                        ------------------------------------------------------------------------ASVGLACP
+OUS46025.1                                                                        -----------------------------------------------------------------------------TRR
+                                                                                                                                                                  
+
+CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase  SKG----------------STERRPFDGLLNP------RCSACLLLGRR--TLAMSRKRR------------------GA
+KAG0583458.1                                                                      RRR----------------DEDTEEFDDYIDP------AKAEPMEAMDP--D--------------------------EE
+PTQ33238.1                                                                        VPK------------------NAKEFDDYIDP------ANAEPLEVED---D--------------------------EE
+GAQ90408.1                                                                        AADAGREDGGDEGEEEAEDDYDEEGFDDDATF------EEGDFDEFLEE-VD--------------------------EP
+XP_001696935.2                                                                    IAP----------------VAPAPARQTLCAARRGRPPGGP----PEPTPEGPEPE-FFEDDDINYEDEAEDGEFVEQLD
+XP_005851510.1                                                                    ----------------------------DL-------------------------------------DVGLNTDEDEELA
+XP_024517730.1                                                                    PRR----------------GGDGEGEHRYADS------AGNDPPEAEGP--E--------------------------E-
+GJP33877.1                                                                        AGS----------------GRGEGSGSEFPNP------AELPPKAAEEE--A--------------------------RR
+KAH7279093.1                                                                      FFR----------------ACFAMSSKEIPNP------SEADPPEVEDFDEE--------------------------AP
+KAH9541295.1                                                                      KQP----------------RRQRSEFDDYIDP------AKAEPFEAEDE--E--------------------------DE
+XP_024364396.1                                                                    RRR----------------NDDTKEFDDYINP------AKAEPMEAMDA--E--------------------------DE
+WP_194018526.1                                                                    --------------------------------------------------------------------------------
+XP_021969154.1                                                                    LTL----------------FAINRDGKHYPNP------ADIDPPEAPED--T--------------------------VH
+OAP16898.1                                                                        LTV----------------AAGPARRNSYPNP------ADDDPPEAPED--S--------------------------MH
+MBF2019582.1                                                                      --------------------------------------------------------------------------------
+WP_190370564.1                                                                    --------------------------------------------------------------------------------
+WP_190950786.1                                                                    --------------------------------------------------------------------------------
+WP_211627413.1                                                                    --------------------------------------------------------------------------------
+QDZ19900.1                                                                        -------------------------------PA-----------------------------------------SSSPRR
+KAA6418459.1                                                                      ----------------------------QSDAAL------DNSPDIESNP-VDVQSLATD----N---A-D--LTDVDLD
+PNH05610.1                                                                        APH----------------VESGRKLSVVAKARRGRPPAQPEPDEPGPGPDLPDDE-LFL---DDEFDEGEDTAYAEELD
+OUS46025.1                                                                        A-------------------------------GRT-VG------------------------------ARW---------
+                                                                                                                                                                  
+
+CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase  DRSSS----GRT---------TLRTAALHPM---DHATRRWGPM-IRAVGTTTSMSTGVRDLVLVSSARQFAEGLMRNSR
+KAG0583458.1                                                                      EMTKF----DRV---------VREADRVRKS-QEEEYKRTKPVF-MRAIGLG-------------D--QVDIEGEEEDV-
+PTQ33238.1                                                                        GISKF----EKV---------AQEAERVRKL-QEEEYTRMKPIF-LKAIGID-------------P--EDYKSAQDLQEE
+GAQ90408.1                                                                        E-GEG----GEI---------LEEA--ALGS-TEDRLGPSKPLSGVKAIEVG----------------LVDVVKDD----
+XP_001696935.2                                                                    PHTRRLMGI--------------------------------------------------------------------AEQ
+XP_005851510.1                                                                    GITERLLKFGYLEDTGSLDEVVPGI--GSDG-TDEEYEEV---V-AELFS-------------------SDDDEEEEEEE
+XP_024517730.1                                                                    ---AF----QPR---------KNGGPDQDKA-AVNGVANSSSMF-NKLKDLG----------------------------
+GJP33877.1                                                                        DGESR----AEM---------IRAEAIKLREEEERRLYGEPGAA-PRELVEA-------------A--VAEEEAEGEADG
+KAH7279093.1                                                                      DVTKF----DRI---------WVKSQEARKK-EEKYYQENRAVF-REAIGLD-------------P--NGEDEDEDEDKI
+KAH9541295.1                                                                      EMTKF----DRV---------AREAAKVRKQ-QEAEYKRTKPIF-MKAIGLA-------------A--DAEEEEEEEEEE
+XP_024364396.1                                                                    DMSKF----DRV---------VREAEKVRKS-QEEEYKRTKPVF-MRAIGLG-------------D--QVGEEEEEEEDE
+WP_194018526.1                                                                    --------------------------------------------------------------------------------
+XP_021969154.1                                                                    GVSKF----KQL---------DLRIARARKA-QDAQYEKDQSIF-LKAIQDV-------------E--DAPDESAST---
+OAP16898.1                                                                        GVSKF----QQI---------QRQAARARKL-EEEDFEKNRNTY-LSAIADV-------------E--DAAETGR-----
+MBF2019582.1                                                                      --------------------------------------------------------------------------------
+WP_190370564.1                                                                    --------------------------------------------------------------------------------
+WP_190950786.1                                                                    --------------------------------------------------------------------------------
+WP_211627413.1                                                                    --------------------------------------------------------------------------------
+QDZ19900.1                                                                        GRTT----SGSR--------------------------------------------------------------------
+KAA6418459.1                                                                      AI--IS--------------------------------------------------------------------------
+PNH05610.1                                                                        PMSRRLV-------------------------------------------------------------------------
+OUS46025.1                                                                        --------------------------------------------------------------------------------
+                                                                                                                                                                  
+
+CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase  --GRISRFQNPTLTSGEAGA--AVVRHVGLPVSSSSWSL-----APLGRCAPCGDDKMKGVQQCRVSSSNTRGRAGRYAK
+KAG0583458.1                                                                      -----------------DTD--DTFDLVNEAVASKKAVA-----KSN-----------------GRTSGPSKAKAPVAPR
+PTQ33238.1                                                                        EEEE----ELAPEVTGAGED--DFYNVVNRAVASKRKPK-----PLNLKSAAA---R-----SFLDRDDDALDIVNDIGK
+GAQ90408.1                                                                        --------------LDLEEA--EELGTVEELEGNEGLIA-----ADE--ED-----------------------------
+XP_001696935.2                                                                    REDV----EEAGYEEY------EEYEEAEDEGALDDAA-EADR--------------D--GI------------------
+XP_005851510.1                                                                    EEDS----EESEDSEE------SEEEEEEEEGDVLTAA-DRESEVAPRRKVARK---PPSDLAID--------S------
+XP_024517730.1                                                                    -------------------------ERYEASKVSKRRAA-----NVV-----------------VKSSEES---------
+GJP33877.1                                                                        ----------------EGEGLMKKVEASSQSVA---SAG-----GSS----------------LTRGSLREQREEGE---
+KAH7279093.1                                                                      EGPEIISLEDREAASMSEDG--DFFSAVDAAVASLKRRE-----RAAKQGKGML----------NKIDSEDIDKVKK---
+KAH9541295.1                                                                      --EE----DDDLPEELLDPD--DDFFNISQAVSIKKKQA-----KASQKKNKA---AVVEFENLARTPPKTGPRIPLSSL
+XP_024364396.1                                                                    --EE----IDE-EDDISDFD--DTFELVDAAIASKKSQT-----KSN-----------------GRKPAASKPK------
+WP_194018526.1                                                                    --------------------------------------------------------------------------------
+XP_021969154.1                                                                    -------------ANDDSEG--DLYSEIDDSIAL-KRKE------FVKKGLLKP----------NPKKDESKEEIKD---
+OAP16898.1                                                                        -------------DDEESGG--DLFSDIDRAISM-KRSE------FVKQGLLKP----------NPPKTASLKKIGEEGN
+MBF2019582.1                                                                      --------------------------------------------------------------------------------
+WP_190370564.1                                                                    --------------------------------------------------------------------------------
+WP_190950786.1                                                                    --------------------------------------------------------------------------------
+WP_211627413.1                                                                    --------------------------------------------------------------------------------
+QDZ19900.1                                                                        ------------LRGG------FPVRR------------VLEG--------------T--R-------------------
+KAA6418459.1                                                                      QGSF----DQVSTGSQ------DWYSELDKT-----ST-SIVP--------------Q--DI------------------
+PNH05610.1                                                                        EPDQ----PEPDWDDD------GEYEEAEDE---DEAT-ETDR--------------D--GI------------------
+OUS46025.1                                                                        ------------TREG------DGVDHGRAG----ARLEVVRA--------------S----------------------
+                                                                                                                                                                  
+
+CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase  EEAAAEEEEEGADDAEEEEEEEEEEEEEEEMIVGRREAYVDDAD-FDLDFG-DDVLGERDEFDDYAEATMNFGREGG---
+KAG0583458.1                                                                      VIEDEEEEE---LDPE----EVADLEDIDD-----AMPVELD-E-EDEEGF-INFKD--STFGGLGFDDDDGEGEDG---
+PTQ33238.1                                                                        VVSEESESE---LEEE-----EEDIVGIDD-----EEEDEEDDE-EEEEES-IELGDFADELDELGLDDFDEFDSDL---
+GAQ90408.1                                                                        -DVAEAVYTEDYEEDAGSRGELVEEEEDEGG----AAAAREQKY-AAPPLN-AVNLDVNQSVSYLDDDALDVEFDDAQEQ
+XP_001696935.2                                                                    ------------------------------------AADEDVG--------------------------------EP---
+XP_005851510.1                                                                    --IVLEAQRGGTQDMRNMGMFATSSPGVGGEQGEPGANGEQEE--------------------------------AP---
+XP_024517730.1                                                                    ---DGSEEE----EAK----DESAQASIPE-----EAPPPPKVK-VDKDD---------PSFN-LELG-------EL---
+GJP33877.1                                                                        ---VEEEEEIEVEEEEEEEGSEVDEEEYEE-----EEEGEDEEDEEEEE-EEEE-EEEEEEDEEDEEASFDMRMVTA---
+KAH7279093.1                                                                      -----EENTSSIPKRKG-LVEVEAAEDAEGEEL--EDDREAEID-DDEDIQE-EGIEEEDDVLTDPSFDLDFT-LEE---
+KAH9541295.1                                                                      RLSEDDDEEDNLLEEEDEEQEQAELEEEEN-----VADVQPEAD-EEEAAE-EEYG---AAFGGLDFDGDDDDDGEE---
+XP_024364396.1                                                                    PVIDEDEEE---LDPE----EVADLEDIDD-----AIPLDEELD-EDEDGF-INFKD--ETFGGLRFDDDEVYNGDE---
+WP_194018526.1                                                                    --------------------------------------------------------------------------------
+XP_021969154.1                                                                    ----EVADELQPQEEDD-LDEIDELEELKG--V--GEDSEAEN--SDLDI-D-DDLGPGNSS-VKSEFESEFDAFRK---
+OAP16898.1                                                                        EEEGDVTDDVDELDEEE-VVDLDEIDKLTG--L--TEISDEEDW-VDEEG-N-TRINKKKEFGSDHQFEFDLDDFGE---
+MBF2019582.1                                                                      --------------------------------------------------------------------------------
+WP_190370564.1                                                                    --------------------------------------------------------------------------------
+WP_190950786.1                                                                    --------------------------------------------------------------------------------
+WP_211627413.1                                                                    --------------------------------------------------------------------------------
+QDZ19900.1                                                                        -------------------------------QRAERPTARVSAA-SEKSS------------------------SEQ---
+KAA6418459.1                                                                      ------------------------------------EPQDDEE--------------------------------DP---
+PNH05610.1                                                                        ------------------------------------AADGDAG--------------------------------EP---
+OUS46025.1                                                                        ----------------------------------------------------------------------------A---
+                                                                                                                                                                  
+
+CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase  VGEGGGANG-AES-SATLRELLEEAG-V-Q---------------------------------------------P----
+KAG0583458.1                                                                      ---EEPLVE-PTY-RMTLGELLDEAR-V-T---------------------------------------------P----
+PTQ33238.1                                                                        L--DDEFKP-PVY-KMTLAELLDEAK-V-T---------------------------------------------P----
+GAQ90408.1                                                                        F--LDEVEE-ADY-TIALGELLENAG-V-K---------------------------------------------P----
+XP_001696935.2                                                                    S--TSYPEP-PDR-AFRAPDLFGEAA-L-F--------------------------------------------EA----
+XP_005851510.1                                                                    Q--ARFPEP-PAR-SYRLAELLRLAG-Y-EEQASAQPGMLADSGRSQGPWPHRRQLAMAAAAAYWRRLSPSSIRST----
+XP_024517730.1                                                                    Q--ESVIKE-PRF-KMTLTELLDEAK-V-V---------------------------------------------P----
+GJP33877.1                                                                        M--AEAGEEGGAG-ALTVAEILEDAG-V-E---------------------------------------------P----
+KAH7279093.1                                                                      D--LEQIKE-PKF-SMTLSELLDEAR-V-V---------------------------------------------P----
+KAH9541295.1                                                                      ---DEEMSE-PHY-RMTLGELLDEAR-V-T---------------------------------------------P----
+XP_024364396.1                                                                    ---GEAMME-PTY-RMTLAELLDEAR-V-T---------------------------------------------P----
+WP_194018526.1                                                                    --------------MVKLGQLLASVPEVVT---------------------------------------------AAPWL
+XP_021969154.1                                                                    G--EVRIVE-PKC-KMTLAELLDESK-V-V---------------------------------------------P----
+OAP16898.1                                                                        S--KARIVE-PKF-KMSLAELLDESK-V-V---------------------------------------------P----
+MBF2019582.1                                                                      ---------------MKLRDLLAKVSGISQ---------------------------------------------I----
+WP_190370564.1                                                                    ---------------MKIRELLAVINHLEY---------------------------------------------S----
+WP_190950786.1                                                                    ---------------MKLRELLTAVDSVEQ---------------------------------------------L----
+WP_211627413.1                                                                    --------S-GIP-L------TILAE-K-L--------------------------------------------NA----
+QDZ19900.1                                                                        ---PAGAVV-PRV-S------VALSD-I-L--------------------------------------------P-----
+KAA6418459.1                                                                      D--ASYPER-PSR-SYTLASLLKLAD-I-S--------------------------------------------LP----
+PNH05610.1                                                                        S--TSYPEP-PDR-EFRASDLFGEAG-L-M--------------------------------------------DA----
+OUS46025.1                                                                        A--NA--DA-EVDAEALLREIFADAE-V-D---------------------------------------------A----
+                                                                                                                                                                  
+
+CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase  ---IY--VA-GN-AEVVVTGVS-IDSRTTSPGDVFVCIVG--DKT--DGHLYVAEAVEKGAVAVVASKE----------E
+KAG0583458.1                                                                      ---IS--VE-GD-LDVEITGIQ-HDSRHVIPGDLFVCVKG--LKS--DGHEFANQAIEKGAIAVISCT------------
+PTQ33238.1                                                                        ---LS--VE-GD-LDVEITGIQ-HDSREISTGDMFVCCIG--HSS--DGHLYSSEAVERGASVLVVSK------------
+GAQ90408.1                                                                        ---ML--IE-GD-LDVEVFGIT-QDSRQVKEGDLFVCIKG--LST--DGHLYAAEAVEKGASAVIASE------------
+XP_001696935.2                                                                    ---ALWLA--AHFPNIEVTGVQ-SNPHLVTPGDVYVHHEGL--TD-EDQVAAVSVALEQGAVLVVAPHLPKDSTG--LHV
+XP_005851510.1                                                                    ---AVLQA--ASAPDVDIRNILTCNSISGGEDSLYVCVPSA--DGQCDGHDWADEASEMGAVAVIAGRPLP--D------
+XP_024517730.1                                                                    ---LS--VE-GD-LDVIISGIH-HDSRQVNSGDMFVCCIG--ETS--DGHSFVPQAAEQGAVVIVATK------------
+GJP33877.1                                                                        ---LD--VD-GD-LTVEVTGIQ-ADSREVKPGDLFVCVVG--QQT--DGHMYVGDAAERGAAAVVLSRG-----------
+KAH7279093.1                                                                      ---IL--VD-GD-EDVEITGIQ-WDSRQVMPGNMFVCGIGTPSSS--TENPPLTEAIEKGAVVVVASME----------V
+KAH9541295.1                                                                      ---IS--IE-GD-LDADITGIQ-HDSRQVSPGDLFVCVKG--LSL--DGHDFATQAVERGAVAIVASGE----------I
+XP_024364396.1                                                                    ---VA--VE-GN-LDIEITGIQ-HDSRLVIPGDLFVCVKG--LKS--DGYEFAHQAIEKGAVAIVSSS------------
+WP_194018526.1                                                                    AQEPD--RY-PA-LGEMVRGLS-TNSHACPPGTLFIGMPG--TRV--DGGEFWSGALGAGAIAAVVSEKALQ--------
+XP_021969154.1                                                                    ---VS--VL-GN-LEIEITGIQ-HDSRLVEPGDLFVCCVG--KKT--DGHLFLTEADKRGAVAVVASKE----------I
+OAP16898.1                                                                        ---IS--VY-GD-LDVEITGIQ-HDSRGVSAGDLFVCCLG--SEN------FLSEADKRGAVAVVASKE----------I
+MBF2019582.1                                                                      ---P---EH-PA-LDKEVKGIS-TNSHACQLGDLFIGMPG--TRV--DGGEFWQSALEAGAIAALISPQSAA--------
+WP_190370564.1                                                                    ----------KI-ADVEVTGIK-TNSHACTTGDLFIGMPG--TRV--DGGEFWQSAINAGAVAAIISPEAAL--------
+WP_190950786.1                                                                    ---P---SHPAL-GDAEVRGLK-TNSHACGVGDLFIGMPG--TRV--DGGEFWPSAIASGAVAAIISPQAAQ--------
+WP_211627413.1                                                                    ---SL--F--GKS-DGDVTNVT-HDSRQASEGTIFVAIKGS--TV--DGHRFVGDVMRRGAAGVISEFEAPD--------
+QDZ19900.1                                                                        ---EA--DG-PAA-QLQVENLS-NDSRVIGSNCVFFCIEGT--QN--DGHDFAAQAAENGAIAVVASKQVDL-E------
+KAA6418459.1                                                                      ---EDFGE--DEL-EVAITGLQ-NRPHKVQAGDLYIHITKP--DE--DVWGCVHEALQRGASAVIAGDIFEAEE------
+PNH05610.1                                                                        ---ALWLA--SRYPDVGVTGVQ-SNPHLVVPGDVFVLHPGL--TE-DDDLYAIGAAVEKGATVVVAPTLQPDDINVEPWS
+OUS46025.1                                                                        ---EWYGVD-EDE-DVEISGIA-NDINALLSGDLFVCPVGG---A--AGASLAREAVAAGAVAIVASERVE--G------
+                                                                                                   : .:          . ::.                   .   **   :               
+
+CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase  E-----VVFDGEKVKALVMVEDTSKVISALSSAVYRHPSRQMAVIGVTGTNGKTTTTYLLRGMYNAMGLETGLVGT----
+KAG0583458.1                                                                      ------EVPPTEGVKAAVVVEDTNVILSGLAGAFYGHPSKSLAVVGITGTNGKTTTSYLIRSMYEAMGSQVGLLGT----
+PTQ33238.1                                                                        ------EVTLNKSVRALVIVEDTNSILSALAGAFYGHPSQKLSVIGLTGTNGKTTTSYLIRSMYEAMGLTTGLLGT----
+GAQ90408.1                                                                        ------EVLVGASCKAVVLVEDTTEILSALAGAFYREPSKKLTVVGITGTNGKTTTSYIVRGIIEEMGQQTGLLGT----
+XP_001696935.2                                                                    GEDPLE--GVVPDEVPLVRVKDSTEAGSRLAAAFYETPSRNMVTVGVVGLLGKTTTSWLVRGILEELGQTVGLMSS----
+XP_005851510.1                                                                    ------------ALLPVVVVDDVAAALGSLADAFYERPSRRMRTVGVVGSYGKTTTAWLSRGMFEETAERCGMIGTI---
+XP_024517730.1                                                                    ------EVEIGESVKAVVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKTTTSYLLRSIYESMGLKTGLIGT----
+GJP33877.1                                                                        ------DVEVDERVDAVVQVEDTQGVLSALAGAFYDHPSEKLAMVGLTGTNGKTTTTYLIKSIYDAMGVSAGLLGT----
+KAH7279093.1                                                                      ------SVQENVRT---VLVEDTVTALSSLSAAFYRNPSKEMSVVGICGSNGKASTSFLVKSMFEAMEKKTGLISS----
+KAH9541295.1                                                                      A-----ALSASEGLKAIVLVDDTNAILSALAGAFYGHPSQSLAVVGITGTNGKTTTSYLLRSMYEAMGLQTGLLGT----
+XP_024364396.1                                                                    ------EVLPAEGLEASVVVEDTNILLSGLAGAFYGHPSKNLAVVGITGTNGKATTSYLIRSIYEAMGLQAGLLGT----
+WP_194018526.1                                                                    -------KFPPQNGECVIAVPDLVPVCAGIAAAFYQHPARTLQLVGVTGTNGKTTTSHLIEYFLNQQQRASALLGT----
+XP_021969154.1                                                                    ------DIEETLGCKALVLVEDTSSVLATLAASFYKHPSKNVAMIGITGTYGKSSSAYLIKGMYEVMGLRTGMITN----
+OAP16898.1                                                                        ------DIEDTLGCRALVIVEDTNAVLAALASSFYRHPSKNMSVIGVTGTDGKTTTTYLIKSLYEAMGVRTGMFST----
+MBF2019582.1                                                                      -------KYPPTPNACVIQVADPVSACADLSAAFYGYPSQQLRMVGVTGTNGKTTITHLIEFFLNQSQLPTALLGT----
+WP_190370564.1                                                                    -------KHPFKPSDPVIVVENINRLCAEVARAFYGYPGRKLKLVGVTGTNGKTTTTHLIEYFLNQASLFTALFGT----
+WP_190950786.1                                                                    -------KHPPTDEAVVISASNITQACAQIASAFYGYPGQKLKLVGVTGTNGKTTTTHLIEFLLNKANLATALMGT----
+WP_211627413.1                                                                    -----------AFDGAWLQVANARVALAKAASLVNDDPSHKLDLIGITGTNGKTTTTYLCYALAEAEGIKPAMLTT----
+QDZ19900.1                                                                        -----------GLDVPVLFVEDTQSRLAAASKAFYGDPSSKLKTVAVTGTNGKTTTTWLVRGILEEAGFITGMVGT----
+KAA6418459.1                                                                      -----------DLEVPVMLLPDCLAAQQRLAIAFYDNPSTKMTVV---GSTGKTTTSWLIRGMFDELDKSAGLIGT----
+PNH05610.1                                                                        GADPLKEPGMLPDDLPVVRMEDTSAAGSMLAAAFYGAPAREMVTVGVLGEHGKTTTAWLIRGVLEELGQTVGLMSN----
+OUS46025.1                                                                        -----------VADVPCAVVANVDEALADIARVFYGDPSTALTAIALTGAVGKTTTSYLVKSVFEAADIKMGLVGSNGNY
+                                                                                                       :        :  .   *.  :  :   *  **:: : :   . :      .:. .    
+
+CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase  --INHFVG------KKKL-------------------ESSQ--------------T--TPEAAPLHRLMKDMVDAGVSAC
+KAG0583458.1                                                                      --INYYINA-----KKKL-------------------EASH--------------T--TPDAVHLQKLMASMVHHGTDTC
+PTQ33238.1                                                                        --IAYYINN-----RTKL-------------------DAPN--------------T--TPDAVYLQQLMAKMVSSGTEAC
+GAQ90408.1                                                                        --IAYYV-G-----KKRL-------------------DAPN--------------T--TPDAIRTQQLMATMVEKDVSAC
+XP_001696935.2                                                                    --IEHAIAEDRLDEDGYLWEPLEEDPSADR-----ESSVPFKLIPYEGKYEQHYGR--RLPGLNAQKVLAGMRDRGAGVA
+XP_005851510.1                                                                    ---EYALEEVRLTEEGEVWVAEEQDVTLQAGGGLRDCSSPFHITPYEGKYPQVP-T--TPDALHMQKALAGCADRGASVA
+XP_024517730.1                                                                    --ISYSIHG-----KHKQ-------------------DAPH--------------T--TPDAVYLQKLMATMVHNRTEVC
+GJP33877.1                                                                        --ISYKIKD-----QE-L-------------------EAPN--------------T--TPDAILLQKLLSQMVDAGCEAC
+KAH7279093.1                                                                      --IANYVFG-----KKKA-------------------DITN--------------P--DLDAVSLHKLLATMVHNDAGAC
+KAH9541295.1                                                                      --INYFINN-----KKKL-------------------DAPN--------------T--TPDAVYLQKLMATMVHSRTDAC
+XP_024364396.1                                                                    --INYYING-----KKKL-------------------EATH--------------T--TPDAVHLQKHMASMVHHGTDAC
+WP_194018526.1                                                                    --LYTRWPG-----YQKT--------------------ATH--------------T--TPFATDLQRQLAEALQAGNQYA
+XP_021969154.1                                                                    --VAHYIHG-----ENQL-------------------ETKN--------------T--IPDGVSRQKLMAKMVHNGTEAL
+OAP16898.1                                                                        --VSCYIHG-----DNKL-------------------DTPN--------------ATMNPDAVLVQSLMAKMLHNGTESL
+MBF2019582.1                                                                      --LYTRWAG-----FQQT--------------------AVH--------------T--TPFAAQLQAQLAAARDAGNQYA
+WP_190370564.1                                                                    --LYTRWSG-----FSQV--------------------ATH--------------T--TPFAVDLQQSLSEAVNAGCEFG
+WP_190950786.1                                                                    --LYTRWPG-----FEQT--------------------AVH--------------T--TPFAVELQQQLAEAVNAGNEFG
+WP_211627413.1                                                                    --VEYRIGDRTE--------------------------------------EAVR-T--TPEASDTNRFLKQAVEEGCGFA
+QDZ19900.1                                                                        --VEYALAEHRLDSEGKIWESGEEDPTLQM-----QQTLPAHIVPYFGKYEVQN-T--TPDALQVQKIMASMVNQGGEAV
+KAA6418459.1                                                                      --VEYGIDEFLMTEDGDLWKRDEPDPTLQR-----ESSVPNCLTPYCGKYEVPE-T--LPDGLHVHKIMAGQADRGAAAC
+PNH05610.1                                                                        --IEHAIAEDRLDEDGYLWEATEEDPSVDR-----ESSVPFKLIPYEGKYEQFYGQ--ALPGLNAQKMLAGMHDRGAKVA
+OUS46025.1                                                                        VRVDFEEDDLKLTTQGGVWESDEEDTTRDR-----TSTAPGWLAPYRGKYEFEE-L--GADALQFQQLTAGIADNGANAA
+                                                                                                                                               .   :              
+
+CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase  VMEASSHGLELGRVDDVDFDVAVFTNFTR--------DHMDFHKTE-EDYRSA-KGKLFDRM-VDPDRHRKVVNLDDPNA
+KAG0583458.1                                                                      IMEVSSHAMVLERCKEVDFDVAVFTNLTR--------DHMDFHKTE-DEYKEA-KGKLFAKM-VDPERHRKIVNIDDPHA
+PTQ33238.1                                                                        VMEVSSHALTLDRCKEVDFDVAVFTNLTR--------DHMDFHKDE-EEYRAA-KGRLFAKM-VDPEKHRKVVNIDDPNS
+GAQ90408.1                                                                        VMEVSSHALQLGRVKEVDFNVAVFTNLTE--------DHRDFHGNM-DNYREA-KGKLFAKM-TDPEWHRKVVNIDDPNA
+XP_001696935.2                                                                    VVELQADGLMLGTYDFMSLNVAVVTSLSPRPGVPAAQQPAELVAAAADEVHAAIE-LLSARLV-DPETQALVLNADDPAA
+XP_005851510.1                                                                    LVECDPASLGDGRADHVDFDVLVYTNSY--------AEKEAGAEGGSQACHDR-VAELFRRVQGDVERQRAVINIDDPLG
+XP_024517730.1                                                                    VMEVSSHALAQDRCKEIDFDVAVFTNLTR--------DHMDYHENE-DSYKEA-KGKLFASM-VDPARHRKVVNIDDPNA
+GJP33877.1                                                                        VMEVSSHALTLGRVADVDFDVAVFTNLTR--------DHLDFHGTM-EEYRDA-KARLFDAM-TDASRHRKVVNLDDPHA
+KAH7279093.1                                                                      VMEVG----EVSDSLNLDFNIAVFTNLMQ--------LNDSAERMD-EKHSHS-ISNLFAKM-VDPKRHAKVVNLDDSYA
+KAH9541295.1                                                                      IMEVSSHAMVLERCKEIDFDIAVFTNLTR--------DHMDFHKTE-DEYKAA-KGKLFAKM-VDPERHRKVANIDDPNA
+XP_024364396.1                                                                    IMEVSSHAMHLGRCKEVDFDVAVFTNLTH--------DPEDFHKSE-DEYKEA-SGKLFAKM-VNPEKHRKIVNIDDPQS
+WP_194018526.1                                                                    VMEVSSHALAQGRVLQCGFACAVFTNLTQ--------DHLDFHGTM-ENYFAA-KALLFEG---QYLKGRAVINKDDVYG
+XP_021969154.1                                                                    VMEASSHELESGKCDEVDFDIAVFTNLST--------DHLDTHGSE-EEYKNA-QLKLFGRM-VDPTRHRKVVNIDDASA
+OAP16898.1                                                                        VMEASPQELALGKCDEVDFDIAVFTNLTR--------ENTDFRGTD-EEYRDA-EAKLFSRM-VDPERHRKVVNIDDPNA
+MBF2019582.1                                                                      VMEVSSHALAQGRVKGCSFDVGVFTNLTQ--------DHLDFHKDM-EDYFSA-KALLFSP---DYLKGRAIANLDDSYG
+WP_190370564.1                                                                    VMEVSSHSLAQGRVFGCGFDVAVFTNLTQ--------DHLDYHKDM-EDYFAA-KALLFSD---DYLQGRAIINADDEYG
+WP_190950786.1                                                                    VMEVSSHALAQGRVLGCKFEVSVFSNLTQ--------DHLDYHKDM-EDYFAA-KALLFSP---EYLKGRAIINADDSYG
+WP_211627413.1                                                                    AMEASSQAIDLHRCDWLRFRVAIFTNLS--------RDHLDYHLTM-ENYFDA-KKKLFDGRL-GERPGSCVVNIDDDWG
+QDZ19900.1                                                                        VMEASSHALAMGRCDNVDVNVGIFTNLS--------REHMDFHGDM-DSYEQA-KLRLFELIS-T--NGTGVVNLDDPVS
+KAA6418459.1                                                                      VLECTTSGLKEGRCAYVDFDVAVFTNIL--------QEKVDAFGGI-APYLEA-QGSLFLKLK-DPNRQRAVVNSDDPYA
+PNH05610.1                                                                        VLEMGIPSLVIGTFDFVDINVAVVTSLPPTKPAPGEQQGRDAAKASSSEAAELIMGTLAVKFR-DSDAQVLVLNLDDPQA
+OUS46025.1                                                                        VMEVSAEQVRRKATRGMNFDIVALTSFE--------GARKNYNGAD-SEYSSF-VADVFKVLE-NAETQRGVINIDEEDA
+                                                                                   :*               .     :.                               :             : * *:  .
+
+CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase  DWFVARGNP-NVPVVTFGME--REDADVRALEVQLSLFE-TEVV--VRTPKGDIEISSGLLGRHNVYNILATVAVGIAID
+KAG0583458.1                                                                      SYFVEQGNP-DVPVVTFGME--NKNADVYPLEVQLSLFE-TELL--VRTPRGNIEISSGLLGRHNVYNILAAIAVGIAVE
+PTQ33238.1                                                                        SYFVAQGNP-AVPVVTFGLE--NTDADVYPLEVQLSLFE-TELL--VRTPKGNVEISSGLLGRHNVYNILAAVAVGVAVE
+GAQ90408.1                                                                        QWFISQGNP-DVPVITFALE--DESADVYPLNVVLSLFE-TELE--IRTPYGNLQISSGLLGRHNIYNVMAAIAVGLAIG
+XP_001696935.2                                                                    EQLLERLGG-AVPVVTYGVV--NKGADVVAESIKSNIWE-TELI--VRTPGGRLQIITNLLGRHNVANVLAAVATGVALK
+XP_005851510.1                                                                    AELAQAAAAAGATVLTYSAD--SRDADIYAEKAKSSIWE-TEVL--VNTPLGRLQIITPLLGRSNVCNVLAAVSTGIACG
+XP_024517730.1                                                                    GYFVSLGNP-KVPVVTFGME--KS-ADVHPLDIQLTLFE-TNVL--VKTPRGNIEISSGLLGRHNVYNILAAVSVGIAVD
+GJP33877.1                                                                        EFFMSRGGA-DVPTITFSLE--NTQADVHALEVALSLFE-TELL--VRTPRGDLEISSGLLGRHNVSNILAAVAVGIAIN
+KAH7279093.1                                                                      PFVIAQGSA-DVPVITFSMN--NRDADVFPLDVQLSLFE-TDML--VRTPRGNVEISSGLLGRSNVYCILAAVAVGIAIN
+KAH9541295.1                                                                      AYFINQGNP-DVPVVTFGIE--SVDADIFPLEVQLSLFE-TELL--VRTPKGNIEISSGLLGRHNVYNILAAVAVGVAVE
+XP_024364396.1                                                                    DYFVTQGNQ-DVPVVTYAMG--NKNADVYPLEVQLSLFE-SELL--VRTPRGNLEISSGLLGRHNVYNILAAVAVGIAVD
+WP_194018526.1                                                                    QKLIDRL-P-SAQVYTYSVT--DSSADFYTKDLDYQPTG-VQGI--LVTPQEELPFQSPLVGQFNLANVLAAIASGLHLG
+XP_021969154.1                                                                    PLFIAQGNQ-DVPVVTFALE--DKKADVHPLQFDLSLFE-TQVL--VDTPKGILEISSGLLGRQNIYNILAAVAVGIAVE
+OAP16898.1                                                                        AFFVQQGNP-NVPVVTFAME--NTKADVHPLKFELSLFE-TQVL--VNTPQGILEISSGLLGRHNIYNILAAVAVGIAVG
+MBF2019582.1                                                                      KRLIEAL-D-SDKVWSYSVS--NPAADFYTAQLNYESTG-VSGV--MHTPVGQISFRSPLVGQFNLSNLLAAVAAVLHLG
+WP_190370564.1                                                                    QRLIARL-N-KQQVWTYSVN--NASADFWMSDLLYQPNG-VQGI--LHSPVGDVSFNSPLVGQFNLENLLAAIAAVVHFG
+WP_190950786.1                                                                    ERLIASL-N-PEQVWSYSVN--NNNADLWMSDLSYEPNG-VSGT--LHTPKGDVAFRSPLVGQYNLENLLAAVGAVLHLG
+WP_211627413.1                                                                    IRLADELRANGQKVMTFSQNL-DKNADLSGDDINVSLLQGTSFL--LKTPIGERKITSPLVGRPHVYNMLAASAAALELG
+QDZ19900.1                                                                        ASFIEVARRRGLKVLTFSANA-SSGADITCLSAELSLFQ-TDMVVGVRATGSEVEITSSLLGHANVSNILGAVAAGVAMG
+KAA6418459.1                                                                      DDM-KRFAA-AVPVVTYAIS--DRSADVYAEKVVMGIWE-SEIT--VRTPIGHLRIITPLIGRNNVYNVLAAVATGLSIN
+PNH05610.1                                                                        AGFLKRLDG-VVPVVTYSLT--NSKADVTAESIKSNIWE-TEVL--VKTPGGRLQFIINLLGRHNVSNLLAAVATGIALK
+OUS46025.1                                                                        D-L-CREYASGVPVVTYSTQIGNTAADVYPARVDFSLFE-TAIS--LSTPAGNVEVVLGLVGEHMIGPICCATAIGLAAE
+                                                                                    .          . ::.       **.                  : :.     .   *:*.  :  :  : .  :   
+
+CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase  APLEDVVKGIEEVDAVPGRCELI--DEEQAFAVVVDYAHTPDALGRLLDSVRECGPRRLITVIGCGGDR--DRGKRPLMA
+KAG0583458.1                                                                      APLEDIVRGIEEVDAVPGRCELI--DEEQAFAVIVDYAHTPDALSRLLDTVRECGPRRIITVVGCGGDR--DKGKRPMMA
+PTQ33238.1                                                                        APLEHIVRGIEEVDAVPGRCELI--DEEQAFAVIVDYAHTPDALSRLLDTVRECGARRIITVVGCGGDR--DKGKRPIMA
+GAQ90408.1                                                                        APLEAIVKGVEEVDNVPGRMELI--DEGQPFGVIVDYAHTPDALERLLDTVRECGPNRLITVLGCGGDR--DRQKRPVMG
+XP_001696935.2                                                                    APLASIVAGIEAVEI-PGRSEVI--DEGQEFSVVVDAARTPEALGDMLDALRAGGARQIFTVFGCSGNE--DASIRPRMG
+XP_005851510.1                                                                    VPLKNIVAGIEAVDIIPGRCEII--DEGQPFSVVVDSASTPEQLSRLLDEVKEAGSKRVLLVFGCPGT-----------T
+XP_024517730.1                                                                    APLEDIVRGIEEVDSVPGRVELV--DEEQPFAVIVDYAHTPDALSRLLDTVRECGPRRIITVVGCGGDR--DRGKRPVMA
+GJP33877.1                                                                        APLEALVRGLEEVDAVPGRAELV--DEEQAFAVVVDYAHTPDALSRLLDTVRECGPRRIITVVGCGGDR--DRGKRPMMA
+KAH7279093.1                                                                      IPLEMIVQGIEEVDAVPGRCELI--DEEQAFAVIVDHARTPDTLSRLLDTVRECGARRLITVVGCEGEC--ERGKRPIMA
+KAH9541295.1                                                                      APLEDIVRGIEEVDSVPGRCELI--DEEQAFAVIVDYAHSPDALSRLLDTVRECGPRRVITVVGCGGDR--DRGKRPIMA
+XP_024364396.1                                                                    APLEDIVRGIEEVDAVPGRCELI--DEEQAFAVIVDHANTPDGLSRLLDTVRECGPRRIITVLGSQGDR--DKAKRPLMA
+WP_194018526.1                                                                    LDPGAMVKDLLDFPGVPGRMEQVKIRPDQDISVMVDYAHTPDSLENALKAARPFIPGRLICVFGCGGDR--DRTKRPLMG
+XP_021969154.1                                                                    APLEDIVRGIEEVDVVPGRCELI--DEEQTYGVVVDYANTPDGLSRLLDNVRELNPKRIITVIGCPGET--ERGKRPVMT
+OAP16898.1                                                                        APLEDIVRGVEEVDAVPGRCELI--DEEQAFGVIVDHANTPDGLSRLLDSIRELKPRRIITVIGCEGEN--ERGKRPLMT
+MBF2019582.1                                                                      LNLEIVIEQLLKFPGVPGRMERVQISENQDIGVIVDYAHTPDSLENLLKAARPFISGKMICVFGCGGDR--DRTKRPIMG
+WP_190370564.1                                                                    IDLQLIADQIPHFSGVPGRMERVQITPKQNISVIVDYAHTPDSLESLLKAARPFIPGKMICVFGCGGDR--DRTKRPKMG
+WP_190950786.1                                                                    LDLQLVASVISEFPGVPGRMERVQISSQQDISVIVDYAHTPDSLENLLKAARPFIPGKIICVFGCGGDR--DRTKRPKMG
+WP_211627413.1                                                                    YGLDSIVKGISRCVGAPGRFERV--SHPGNFAVIVDYAHTDDALLNTLKTAKELATARIITVFGCGGDR--DKTKREPMG
+QDZ19900.1                                                                        YPNDVIAGGIQSTEFVPGRYELI--NEGQDFAVLVDYAHTPDALANVLDDVKAMGAKRVITVFGCGGCR--DTGKRPLMG
+KAA6418459.1                                                                      VPLKTIVAGVEATEVVPGRTEYI--DLQQNFQVLVDSANTPGALNRLLEDVRLCGARKILLVFGCEGEE--DKAKRPYMG
+PNH05610.1                                                                        APLTSIVAGIEAVEI-PGRSEVL--DEGQDFSVVVDAARTPEHLAAMLEAIRQGGAKQIFTVFGCSGHE--DPTLRPRMG
+OUS46025.1                                                                        ISLDVIAAGLEACEVIPGRMELV--DMGQDFSVLVDNANTPEGIERVIQSVRAANCRRVITVIGCEGDMGDERGERAVIG
+                                                                                       :   :      *** * :         *:** * :   :   :.  :     ::: *.*. *             
+
+CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase  KIATEKSEVTILTSDNPRTENPLDIIDDMLAGVGWSIEDYLKWG-RDG--------------------------------
+KAG0583458.1                                                                      KIATDKSDICIFTSDNPRTEEPLDILDDMLAGVGWSMDEYCKMG-EED--------------------------------
+PTQ33238.1                                                                        KIATDKSDVCIFTADNPRSEDPLDILDDMLAGVGWSMEEYLKWG-ESD--------------------------------
+GAQ90408.1                                                                        KIATDKSEVTIFTSDNPRSEHPYQILDDMFKGVGWELDDYLTFGSEND--------------------------------
+XP_001696935.2                                                                    AVAHAKSDYVIITNENPRLEDPAKVVADIVAGFPDDMVNRYSAY-A--YFPFQDQGRT-----P------------LWFE
+XP_005851510.1                                                                    SMAHYKGDAIFITNDSPGASWPSDVIADMVGGLPTEVTNKYTGT-A--YPFLQDPHRV-----P------------HWFQ
+XP_024517730.1                                                                    KIAAAKSEVCIFTSDNPRSEDPLEILDDMLAGVGWSMDEYLKCG-ERS--------------------------------
+GJP33877.1                                                                        KIAAEKSDVTILTSDNPRTEDPLGILDDMLAGVGWSMEEYVEYN-QAG--------------------------------
+KAH7279093.1                                                                      KIASDKSEVSILTSNNPRNEDPLYILDDMLAGVGWTMKEYLEHG-DRD--------------------------------
+KAH9541295.1                                                                      KIATDKSDVCIFTSDNPRTEEPLDILDDMLAGVGWSMEEYVKWG-HDD--------------------------------
+XP_024364396.1                                                                    KIATDKSDVCIFTSDNPRSEDPLDVIDDMLAGVGWSMEEYCKWG-EDD--------------------------------
+WP_194018526.1                                                                    NIAAQLADLAVVTSDNPRTEDPEQILADVVQGIDLEIKPW----------------------------------------
+XP_021969154.1                                                                    KIATDKSDVTMLTSDNPRNEDPLDILDDMLAGIGLTMQDYLKHQ-ADD--------------------------------
+OAP16898.1                                                                        KIATEKSDVTMLTSDNPRNEDPLDILDDMLSGIGWTMQEYLKHG-EHD--------------------------------
+MBF2019582.1                                                                      KIAAELADVAVVTSDNPRTEDPKRILQDIVAGIPASVKPI----------------------------------------
+WP_190370564.1                                                                    KIAAELADIVVVTSDNPRTENPQKILEDILAGIPDTVQPI----------------------------------------
+WP_190950786.1                                                                    KIAAELADVAVVTSDNPRTENPEKILEDILAGIPQTVQPK----------------------------------------
+WP_211627413.1                                                                    RIAGEYSDLAIITSDNPRTEDPLKIISEIEVGVKASGGNY----------------------------------------
+QDZ19900.1                                                                        KIAHDKSDVVFVTSDNPRTENPDVVIDDIVSGFSAELYEKFQVDKELGLHWLQDIHNLDPVYIPETTTRRWEKFKYIGNR
+KAA6418459.1                                                                      EIAHYKADTVIMTNQNQRSEAPEQIIQDIITGFPDEILDKNARRPWA-GGFLQDPCRV-----S------------HTVR
+PNH05610.1                                                                        AVAHAKSDYVIVTNESPRLEDPAKVVADIVAGFPDDMVNRYSMY-A--YFPFQDQGRT-----P------------LWFE
+OUS46025.1                                                                        KVAHDMSDVLFITNDSPKTEDPYKILDDICGGFRNEIYENDKIKDEALFPFLKDMYEV-----H------------ENAQ
+                                                                                   :*   .:  ..* :.   . *  :: ::  *.                                               
+
+CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase  -FYPPLPNGHRLYVHDMRIIAVRAAVAMGEEGDAVVIAGKGHETYQIT-----GT------ERDYFDDREECREALQHVD
+KAG0583458.1                                                                      -YYPPLPNGNRLFVYDIRTIAVRAGVAMGEEGDAVVIAGKGHETYQIV-----GD------TKEYFDDREECREALQHVD
+PTQ33238.1                                                                        -YYPPLPNGNRLFVYDIRTIAVRAGVAMGEEGDAVVIAGKGHETYQII-----GT------EKEYFDDREECREALQHMD
+GAQ90408.1                                                                        -FYPQLGNGHRLFAYDHRAVAVRSAIAMAQEGDCVIVAGKGHETYQII-----GE------ERKYFDDREHCREALERLD
+XP_001696935.2                                                                    PYLQKAQRDNKRYVMEDRYSAIRAAIGTAGPEDVVLLAGKGSEDWVEHADEDGSV------LTGWLDDRVEARNALSKLK
+XP_005851510.1                                                                    KYMLQYQSVVGVYVIEDRFQAIRVAIGMARARDVVVVAGKGHIDWQEYWDGAEFDLEERTTLKSWFDDRVECRNALSKLP
+XP_024517730.1                                                                    -YYPPIWNGNRVFVYDLRKIAVRAAVAMGEEGDAVVIAGKGHEKYQII-----GK------ERKYHDDREECREALLHVD
+GJP33877.1                                                                        -FIPPLPSGNRLYVYDIRGIAVRAAIAMADDGDAVVVAGKGHETYQIV-----GQ------EKTYFDDREECREALQHVD
+KAH7279093.1                                                                      -YYPPLRNGNRLFLYDDRAIAVRAAVAMGEEGDAVVITGKGHEAFQLI-----GD------KKEYLDDREECREALQHVD
+KAH9541295.1                                                                      -YYPPLPNGHRLFVYDIRSIAVRAAVAMGEEGDAVVIAGKGHETYQII-----GK------AKEYFDDREECRDALQHVD
+XP_024364396.1                                                                    -YYPPLPNGHRLFCYEIRTIAVRAGVAMGEEGDAVVIAGKGHNTYEII-----GD------NKEYFDDREECREALQHVD
+WP_194018526.1                                                                    -------------IIGDRATAIHKAIREAKPGDGVLIAGKGHEDYQIL-----GT------EKIHFDDREQAREALILRY
+XP_021969154.1                                                                    -YHPPLANGHRLFLHDIRRVAVRSAVAMGEEGDIVVVTGKGHETYDTV-----GD------TTEFFDDREECREALQYVD
+OAP16898.1                                                                        -YYPPLANGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAYQLE-----GE------KKEFYDDREECREALQYVD
+MBF2019582.1                                                                      -------------VICDRATAIHQAIQNAKPGDGVVIAGKGHEDYQIL-----GT------EKIHFDDREQAREALSIRL
+WP_190370564.1                                                                    -------------VMSDRATAIKTAILQAQPGDGVLLAGKGHEDYQIL-----GT------EKIHFDDREQAREALKQKM
+WP_190950786.1                                                                    -------------VIGDRAIAIRTAILQAQPGDGVLLAGKGHEDYQIL-----GT------EKIHFDDREHAREALQARL
+WP_211627413.1                                                                    ------------VAISDRREAIRLAINAAAPNDVVIIAGKGHENYQIIGND-----------KFHFDDREVALEAIEDRK
+QDZ19900.1                                                                        SRAQYLQNAVRRYVVQERYYAIRLAIGMAEEGDAVVIAGKGHEDYQILANDDYQA------VKSWFDDRVESYAALQEMV
+KAA6418459.1                                                                      EFLFYHQNVWRRYVCEDRYTAIRWAIAAAQKGDVVIVAGKGDQDWTEVADGRGGS------IRGWLDDRVECRNALSKLY
+PNH05610.1                                                                        PYLQKAQRDNKRYIMEDRYSAIRAAIGTAGPDDVVLLAGKGHEDWVEHAGEDGDV------LTGWLDDRVEARNALSKLK
+OUS46025.1                                                                        YECMRLQNLVRRYVMVDRFHAIRAAIGMAERDDVVLILGRGSKDYFVVGRE-----------KHWFDDVVEARDALQKIG
+                                                                                                   *  *:: .:  .   * *:: *:*   :                     **   .  *:    
+
+CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase  ALHA-AGIDTSEFPWRFVNQ----------------------------
+KAG0583458.1                                                                      ALHA-AGVDTSEFPWRVPES---------------------------N
+PTQ33238.1                                                                        ALHA-AGVDTSEFPWRVLES---------------------------T
+GAQ90408.1                                                                        LLRT-SGIDSSELPWRTEYGESWEDE-D--EDIPKH-----DSADIAM
+XP_001696935.2                                                                    YLKQIPRFSRETLPWGSRIEGLMETLAVDPAELSAAAVGGLE--GALD
+XP_005851510.1                                                                    YLSGIKDLNTDVLPWTRYPEERDIL-SL--EGISEAPVGDF------R
+XP_024517730.1                                                                    MLHA-SGIDTSEIPWKFPGHK--------------------------L
+GJP33877.1                                                                        ELRT-H-FDTSQLPWRILDMSDMKVI-P--DPDAN------A-----Y
+KAH7279093.1                                                                      ALHA-AGIDTSEFPWRLPESH---------------------------
+KAH9541295.1                                                                      ALHA-AGVDTSEFPWRVPE----------------------------S
+XP_024364396.1                                                                    DLHA-AGVDTSEFPWRVPES---------------------------N
+WP_194018526.1                                                                    -S----------------------------------------------
+XP_021969154.1                                                                    ELHQ-SGIDTSEFPWRLPESY---------------------------
+OAP16898.1                                                                        ELHQ-AGIDTSEFPWRLPESH---------------------------
+MBF2019582.1                                                                      -G----------------------------------------------
+WP_190370564.1                                                                    LV----------------------------------------------
+WP_190950786.1                                                                    -G----------------------------------------------
+WP_211627413.1                                                                    D----------------------------------------K------
+QDZ19900.1                                                                        KIQA-AGWRTDELPWTWGKPELP------------IDPDDIE------
+KAA6418459.1                                                                      RLDTIRSMDRTEIPFVVMGEREPRF---------WEWGK--------K
+PNH05610.1                                                                        YLKQIPAFNRDTLPWGSRIETLMETLSVDPGDFSRGLPTD-------E
+OUS46025.1                                                                        AIQD-SGVDTHNLPWQSLAARATN-----PGAGN--LL---------G
+                                                                                                                                  
+
+
+

runs/BEAST/xml_files/1e6_pap11align_name.xml

+<?xml version="1.0" encoding="UTF-8" standalone="no"?><beast beautitemplate='Standard' beautistatus='' namespace="beast.core:beast.evolution.alignment:beast.evolution.tree.coalescent:beast.core.util:beast.evolution.nuc:beast.evolution.operators:beast.evolution.sitemodel:beast.evolution.substitutionmodel:beast.base.evolution.alignment:beast.pkgmgmt:beast.base.core:beast.base.inference:beast.base.evolution.tree.coalescent:beast.pkgmgmt:beast.base.core:beast.base.inference.util:beast.evolution.nuc:beast.base.evolution.operator:beast.base.inference.operator:beast.base.evolution.sitemodel:beast.base.evolution.substitutionmodel:beast.base.evolution.likelihood" required="BEAST.base v2.7.3" version="2.7">
+        
+
+    <data
+id="pap11_align_name"
+spec="Alignment"
+dataType="aminoacid"
+name="alignment">
+                            
+        <sequence id="seq_CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase" spec="Sequence" taxon="CBr_g32224_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate-ligase" totalcount="20" value="MASCATLLGGEFAVTAMAGALAGGGSEERRRRMERPSAGFSESRIG-LSPM-SACPETRLTWSADVGTSAGQEYLFDIGTLRSSGATAGATAGG------------SFRKQRNAYCPRSRLRPVIERAP-----PYLGFCHGLGSADGDSGGASTSIPAASKG----------------STERRPFDGLLNP------RCSACLLLGRR--TLAMSRKRR------------------GADRSSS----GRT---------TLRTAALHPM---DHATRRWGPM-IRAVGTTTSMSTGVRDLVLVSSARQFAEGLMRNSR--GRISRFQNPTLTSGEAGA--AVVRHVGLPVSSSSWSL-----APLGRCAPCGDDKMKGVQQCRVSSSNTRGRAGRYAKEEAAAEEEEEGADDAEEEEEEEEEEEEEEEMIVGRREAYVDDAD-FDLDFG-DDVLGERDEFDDYAEATMNFGREGG---VGEGGGANG-AES-SATLRELLEEAG-V-Q---------------------------------------------P-------IY--VA-GN-AEVVVTGVS-IDSRTTSPGDVFVCIVG--DKT--DGHLYVAEAVEKGAVAVVASKE----------EE-----VVFDGEKVKALVMVEDTSKVISALSSAVYRHPSRQMAVIGVTGTNGKTTTTYLLRGMYNAMGLETGLVGT------INHFVG------KKKL-------------------ESSQ--------------T--TPEAAPLHRLMKDMVDAGVSACVMEASSHGLELGRVDDVDFDVAVFTNFTR--------DHMDFHKTE-EDYRSA-KGKLFDRM-VDPDRHRKVVNLDDPNADWFVARGNP-NVPVVTFGME--REDADVRALEVQLSLFE-TEVV--VRTPKGDIEISSGLLGRHNVYNILATVAVGIAIDAPLEDVVKGIEEVDAVPGRCELI--DEEQAFAVVVDYAHTPDALGRLLDSVRECGPRRLITVIGCGGDR--DRGKRPLMAKIATEKSEVTILTSDNPRTENPLDIIDDMLAGVGWSIEDYLKWG-RDG---------------------------------FYPPLPNGHRLYVHDMRIIAVRAAVAMGEEGDAVVIAGKGHETYQIT-----GT------ERDYFDDREECREALQHVDALHA-AGIDTSEFPWRFVNQ----------------------------"/>
+                            
+        <sequence id="seq_GAQ90408.1_UDP-N-acetylmuramoylalanyl-D-glutamate-2_6-diaminopimelate_ligase_Klebsormidium_nitens" spec="Sequence" taxon="GAQ90408.1_UDP-N-acetylmuramoylalanyl-D-glutamate-2_6-diaminopimelate_ligase_Klebsormidium_nitens" totalcount="20" value="------------------------------------MGSRISNQTQ-VAEQ-GLFRRRCRRA-----------QP-------LGIARAT----------------------------------------------------------------------NAADAGREDGGDEGEEEAEDDYDEEGFDDDATF------EEGDFDEFLEE-VD--------------------------EPE-GEG----GEI---------LEEA--ALGS-TEDRLGPSKPLSGVKAIEVG----------------LVDVVKDD------------------LDLEEA--EELGTVEELEGNEGLIA-----ADE--ED------------------------------DVAEAVYTEDYEEDAGSRGELVEEEEDEGG----AAAAREQKY-AAPPLN-AVNLDVNQSVSYLDDDALDVEFDDAQEQF--LDEVEE-ADY-TIALGELLENAG-V-K---------------------------------------------P-------ML--IE-GD-LDVEVFGIT-QDSRQVKEGDLFVCIKG--LST--DGHLYAAEAVEKGASAVIASE------------------EVLVGASCKAVVLVEDTTEILSALAGAFYREPSKKLTVVGITGTNGKTTTSYIVRGIIEEMGQQTGLLGT------IAYYV-G-----KKRL-------------------DAPN--------------T--TPDAIRTQQLMATMVEKDVSACVMEVSSHALQLGRVKEVDFNVAVFTNLTE--------DHRDFHGNM-DNYREA-KGKLFAKM-TDPEWHRKVVNIDDPNAQWFISQGNP-DVPVITFALE--DESADVYPLNVVLSLFE-TELE--IRTPYGNLQISSGLLGRHNIYNVMAAIAVGLAIGAPLEAIVKGVEEVDNVPGRMELI--DEGQPFGVIVDYAHTPDALERLLDTVRECGPNRLITVLGCGGDR--DRQKRPVMGKIATDKSEVTIFTSDNPRSEHPYQILDDMFKGVGWELDDYLTFGSEND---------------------------------FYPQLGNGHRLFAYDHRAVAVRSAIAMAQEGDCVIVAGKGHETYQII-----GE------ERKYFDDREHCREALERLDLLRT-SGIDSSELPWRTEYGESWEDE-D--EDIPKH-----DSADIAM"/>
+                            
+        <sequence id="seq_GJP33877.1_hypothetical_protein_CLOM_g18381_Closterium_sp._NIES-68" spec="Sequence" taxon="GJP33877.1_hypothetical_protein_CLOM_g18381_Closterium_sp._NIES-68" totalcount="20" value="MSFAASSAVIS--------------------PSTAAFPPLMRAQDR-SAQP-RPRGPPPVPATSASASASAAASASPSPAMRRHAPQATSQR-------------------------------------------------------AKPRGARRRVACQAGS----------------GRGEGSGSEFPNP------AELPPKAAEEE--A--------------------------RRDGESR----AEM---------IRAEAIKLREEEERRLYGEPGAA-PRELVEA-------------A--VAEEEAEGEADG----------------EGEGLMKKVEASSQSVA---SAG-----GSS----------------LTRGSLREQREEGE------VEEEEEIEVEEEEEEEGSEVDEEEYEE-----EEEGEDEEDEEEEE-EEEE-EEEEEEDEEDEEASFDMRMVTA---M--AEAGEEGGAG-ALTVAEILEDAG-V-E---------------------------------------------P-------LD--VD-GD-LTVEVTGIQ-ADSREVKPGDLFVCVVG--QQT--DGHMYVGDAAERGAAAVVLSRG-----------------DVEVDERVDAVVQVEDTQGVLSALAGAFYDHPSEKLAMVGLTGTNGKTTTTYLIKSIYDAMGVSAGLLGT------ISYKIKD-----QE-L-------------------EAPN--------------T--TPDAILLQKLLSQMVDAGCEACVMEVSSHALTLGRVADVDFDVAVFTNLTR--------DHLDFHGTM-EEYRDA-KARLFDAM-TDASRHRKVVNLDDPHAEFFMSRGGA-DVPTITFSLE--NTQADVHALEVALSLFE-TELL--VRTPRGDLEISSGLLGRHNVSNILAAVAVGIAINAPLEALVRGLEEVDAVPGRAELV--DEEQAFAVVVDYAHTPDALSRLLDTVRECGPRRIITVVGCGGDR--DRGKRPMMAKIAAEKSDVTILTSDNPRTEDPLGILDDMLAGVGWSMEEYVEYN-QAG---------------------------------FIPPLPSGNRLYVYDIRGIAVRAAIAMADDGDAVVVAGKGHETYQIV-----GQ------EKTYFDDREECREALQHVDELRT-H-FDTSQLPWRILDMSDMKVI-P--DPDAN------A-----Y"/>
+                            
+        <sequence id="seq_KAA6418459.1_MAG:_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_Trebouxia_sp._A1-2" spec="Sequence" taxon="KAA6418459.1_MAG:_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_Trebouxia_sp._A1-2" totalcount="20" value="MLAHYA-----------------------------------SQPQA---WK-QEHAHRPRKRQRR---------------------------------------------------------------------------------------CTRSHAVE----------------------------QSDAAL------DNSPDIESNP-VDVQSLATD----N---A-D--LTDVDLDAI--IS--------------------------------------------------------------------------QGSF----DQVSTGSQ------DWYSELDKT-----ST-SIVP--------------Q--DI------------------------------------------------------EPQDDEE--------------------------------DP---D--ASYPER-PSR-SYTLASLLKLAD-I-S--------------------------------------------LP-------EDFGE--DEL-EVAITGLQ-NRPHKVQAGDLYIHITKP--DE--DVWGCVHEALQRGASAVIAGDIFEAEE-----------------DLEVPVMLLPDCLAAQQRLAIAFYDNPSTKMTVV---GSTGKTTTSWLIRGMFDELDKSAGLIGT------VEYGIDEFLMTEDGDLWKRDEPDPTLQR-----ESSVPNCLTPYCGKYEVPE-T--LPDGLHVHKIMAGQADRGAAACVLECTTSGLKEGRCAYVDFDVAVFTNIL--------QEKVDAFGGI-APYLEA-QGSLFLKLK-DPNRQRAVVNSDDPYADDM-KRFAA-AVPVVTYAIS--DRSADVYAEKVVMGIWE-SEIT--VRTPIGHLRIITPLIGRNNVYNVLAAVATGLSINVPLKTIVAGVEATEVVPGRTEYI--DLQQNFQVLVDSANTPGALNRLLEDVRLCGARKILLVFGCEGEE--DKAKRPYMGEIAHYKADTVIMTNQNQRSEAPEQIIQDIITGFPDEILDKNARRPWA-GGFLQDPCRV-----S------------HTVREFLFYHQNVWRRYVCEDRYTAIRWAIAAAQKGDVVIVAGKGDQDWTEVADGRGGS------IRGWLDDRVECRNALSKLYRLDTIRSMDRTEIPFVVMGEREPRF---------WEWGK--------K"/>
+                            
+        <sequence id="seq_KAG0583458.1_hypothetical_protein_KC19_3G137600_Ceratodon_purpureus" spec="Sequence" taxon="KAG0583458.1_hypothetical_protein_KC19_3G137600_Ceratodon_purpureus" totalcount="20" value="MALRP---------------------------CSNQLLPLQCSLLS-PS----GHNLGFSQG-CLVRNSFRLVKNG---GVGSSGG-VSVGP----------------------RACGFDLRGAFGRKE-----LG-----FGLGLGLDVERGSRIGCQARRR----------------DEDTEEFDDYIDP------AKAEPMEAMDP--D--------------------------EEEMTKF----DRV---------VREADRVRKS-QEEEYKRTKPVF-MRAIGLG-------------D--QVDIEGEEEDV------------------DTD--DTFDLVNEAVASKKAVA-----KSN-----------------GRTSGPSKAKAPVAPRVIEDEEEEE---LDPE----EVADLEDIDD-----AMPVELD-E-EDEEGF-INFKD--STFGGLGFDDDDGEGEDG------EEPLVE-PTY-RMTLGELLDEAR-V-T---------------------------------------------P-------IS--VE-GD-LDVEITGIQ-HDSRHVIPGDLFVCVKG--LKS--DGHEFANQAIEKGAIAVISCT------------------EVPPTEGVKAAVVVEDTNVILSGLAGAFYGHPSKSLAVVGITGTNGKTTTSYLIRSMYEAMGSQVGLLGT------INYYINA-----KKKL-------------------EASH--------------T--TPDAVHLQKLMASMVHHGTDTCIMEVSSHAMVLERCKEVDFDVAVFTNLTR--------DHMDFHKTE-DEYKEA-KGKLFAKM-VDPERHRKIVNIDDPHASYFVEQGNP-DVPVVTFGME--NKNADVYPLEVQLSLFE-TELL--VRTPRGNIEISSGLLGRHNVYNILAAIAVGIAVEAPLEDIVRGIEEVDAVPGRCELI--DEEQAFAVIVDYAHTPDALSRLLDTVRECGPRRIITVVGCGGDR--DKGKRPMMAKIATDKSDICIFTSDNPRTEEPLDILDDMLAGVGWSMDEYCKMG-EED---------------------------------YYPPLPNGNRLFVYDIRTIAVRAGVAMGEEGDAVVIAGKGHETYQIV-----GD------TKEYFDDREECREALQHVDALHA-AGVDTSEFPWRVPES---------------------------N"/>
+                            
+        <sequence id="seq_KAH7279093.1_hypothetical_protein_KP509_37G004600_Ceratopteris_richardii" spec="Sequence" taxon="KAH7279093.1_hypothetical_protein_KP509_37G004600_Ceratopteris_richardii" totalcount="20" value="MQAS----------------------------------CYQR-FEP-LEIS-RPHCCAFFHT------------------FRSSFYQVSFKD-------------------------------LSS--------------------------------QQFFR----------------ACFAMSSKEIPNP------SEADPPEVEDFDEE--------------------------APDVTKF----DRI---------WVKSQEARKK-EEKYYQENRAVF-REAIGLD-------------P--NGEDEDEDEDKIEGPEIISLEDREAASMSEDG--DFFSAVDAAVASLKRRE-----RAAKQGKGML----------NKIDSEDIDKVKK--------EENTSSIPKRKG-LVEVEAAEDAEGEEL--EDDREAEID-DDEDIQE-EGIEEEDDVLTDPSFDLDFT-LEE---D--LEQIKE-PKF-SMTLSELLDEAR-V-V---------------------------------------------P-------IL--VD-GD-EDVEITGIQ-WDSRQVMPGNMFVCGIGTPSSS--TENPPLTEAIEKGAVVVVASME----------V------SVQENVRT---VLVEDTVTALSSLSAAFYRNPSKEMSVVGICGSNGKASTSFLVKSMFEAMEKKTGLISS------IANYVFG-----KKKA-------------------DITN--------------P--DLDAVSLHKLLATMVHNDAGACVMEVG----EVSDSLNLDFNIAVFTNLMQ--------LNDSAERMD-EKHSHS-ISNLFAKM-VDPKRHAKVVNLDDSYAPFVIAQGSA-DVPVITFSMN--NRDADVFPLDVQLSLFE-TDML--VRTPRGNVEISSGLLGRSNVYCILAAVAVGIAINIPLEMIVQGIEEVDAVPGRCELI--DEEQAFAVIVDHARTPDTLSRLLDTVRECGARRLITVVGCEGEC--ERGKRPIMAKIASDKSEVSILTSNNPRNEDPLYILDDMLAGVGWTMKEYLEHG-DRD---------------------------------YYPPLRNGNRLFLYDDRAIAVRAAVAMGEEGDAVVITGKGHEAFQLI-----GD------KKEYLDDREECREALQHVDALHA-AGIDTSEFPWRLPESH---------------------------"/>
+                            
+        <sequence id="seq_KAH9541295.1_hypothetical_protein_CY35_14G055500_Sphagnum_magellanicum" spec="Sequence" taxon="KAH9541295.1_hypothetical_protein_CY35_14G055500_Sphagnum_magellanicum" totalcount="20" value="MAMTALWWWCP--------------------AGSRLCTPPLPAALS-LPST-SPFSRRRSNSREWVSFSSSLKTFGRRRGRRSPSSLQSVSFSPASIACCKDSLLVTNPALLVGSTRGIQLQVVAPPRANGDDCYC-----HCCSRTCGLKHSSSVKCRAKQP----------------RRQRSEFDDYIDP------AKAEPFEAEDE--E--------------------------DEEMTKF----DRV---------AREAAKVRKQ-QEAEYKRTKPIF-MKAIGLA-------------A--DAEEEEEEEEEE--EE----DDDLPEELLDPD--DDFFNISQAVSIKKKQA-----KASQKKNKA---AVVEFENLARTPPKTGPRIPLSSLRLSEDDDEEDNLLEEEDEEQEQAELEEEEN-----VADVQPEAD-EEEAAE-EEYG---AAFGGLDFDGDDDDDGEE------DEEMSE-PHY-RMTLGELLDEAR-V-T---------------------------------------------P-------IS--IE-GD-LDADITGIQ-HDSRQVSPGDLFVCVKG--LSL--DGHDFATQAVERGAVAIVASGE----------IA-----ALSASEGLKAIVLVDDTNAILSALAGAFYGHPSQSLAVVGITGTNGKTTTSYLLRSMYEAMGLQTGLLGT------INYFINN-----KKKL-------------------DAPN--------------T--TPDAVYLQKLMATMVHSRTDACIMEVSSHAMVLERCKEIDFDIAVFTNLTR--------DHMDFHKTE-DEYKAA-KGKLFAKM-VDPERHRKVANIDDPNAAYFINQGNP-DVPVVTFGIE--SVDADIFPLEVQLSLFE-TELL--VRTPKGNIEISSGLLGRHNVYNILAAVAVGVAVEAPLEDIVRGIEEVDSVPGRCELI--DEEQAFAVIVDYAHSPDALSRLLDTVRECGPRRVITVVGCGGDR--DRGKRPIMAKIATDKSDVCIFTSDNPRTEEPLDILDDMLAGVGWSMEEYVKWG-HDD---------------------------------YYPPLPNGHRLFVYDIRSIAVRAAVAMGEEGDAVVIAGKGHETYQII-----GK------AKEYFDDREECRDALQHVDALHA-AGVDTSEFPWRVPE----------------------------S"/>
+                            
+        <sequence id="seq_MBF2019582.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Hydrococcus_sp._C42_A2020_068" spec="Sequence" taxon="MBF2019582.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Hydrococcus_sp._C42_A2020_068" totalcount="20" value="---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKLRDLLAKVSGISQ---------------------------------------------I-------P---EH-PA-LDKEVKGIS-TNSHACQLGDLFIGMPG--TRV--DGGEFWQSALEAGAIAALISPQSAA---------------KYPPTPNACVIQVADPVSACADLSAAFYGYPSQQLRMVGVTGTNGKTTITHLIEFFLNQSQLPTALLGT------LYTRWAG-----FQQT--------------------AVH--------------T--TPFAAQLQAQLAAARDAGNQYAVMEVSSHALAQGRVKGCSFDVGVFTNLTQ--------DHLDFHKDM-EDYFSA-KALLFSP---DYLKGRAIANLDDSYGKRLIEAL-D-SDKVWSYSVS--NPAADFYTAQLNYESTG-VSGV--MHTPVGQISFRSPLVGQFNLSNLLAAVAAVLHLGLNLEIVIEQLLKFPGVPGRMERVQISENQDIGVIVDYAHTPDSLENLLKAARPFISGKMICVFGCGGDR--DRTKRPIMGKIAAELADVAVVTSDNPRTEDPKRILQDIVAGIPASVKPI-----------------------------------------------------VICDRATAIHQAIQNAKPGDGVVIAGKGHEDYQIL-----GT------EKIHFDDREQAREALSIRL-G----------------------------------------------"/>
+                            
+        <sequence id="seq_OAP16898.1_PDE316_Arabidopsis_thaliana" spec="Sequence" taxon="OAP16898.1_PDE316_Arabidopsis_thaliana" totalcount="20" value="MAFT----------------------------------FLSPHPVF-LSLT-GTTSSFSYKP------------------VLLPFSRNSR---------------------------------------------------------------------TLTV----------------AAGPARRNSYPNP------ADDDPPEAPED--S--------------------------MHGVSKF----QQI---------QRQAARARKL-EEEDFEKNRNTY-LSAIADV-------------E--DAAETGR------------------DDEESGG--DLFSDIDRAISM-KRSE------FVKQGLLKP----------NPPKTASLKKIGEEGNEEEGDVTDDVDELDEEE-VVDLDEIDKLTG--L--TEISDEEDW-VDEEG-N-TRINKKKEFGSDHQFEFDLDDFGE---S--KARIVE-PKF-KMSLAELLDESK-V-V---------------------------------------------P-------IS--VY-GD-LDVEITGIQ-HDSRGVSAGDLFVCCLG--SEN------FLSEADKRGAVAVVASKE----------I------DIEDTLGCRALVIVEDTNAVLAALASSFYRHPSKNMSVIGVTGTDGKTTTTYLIKSLYEAMGVRTGMFST------VSCYIHG-----DNKL-------------------DTPN--------------ATMNPDAVLVQSLMAKMLHNGTESLVMEASPQELALGKCDEVDFDIAVFTNLTR--------ENTDFRGTD-EEYRDA-EAKLFSRM-VDPERHRKVVNIDDPNAAFFVQQGNP-NVPVVTFAME--NTKADVHPLKFELSLFE-TQVL--VNTPQGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELI--DEEQAFGVIVDHANTPDGLSRLLDSIRELKPRRIITVIGCEGEN--ERGKRPLMTKIATEKSDVTMLTSDNPRNEDPLDILDDMLSGIGWTMQEYLKHG-EHD---------------------------------YYPPLANGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAYQLE-----GE------KKEFYDDREECREALQYVDELHQ-AGIDTSEFPWRLPESH---------------------------"/>
+                            
+        <sequence id="seq_OUS46025.1_putative_UDP-N-acetylmuramoylalanyl-D-glutamate--2_6-diaminopimelate_ligase_Ostreococcus_tauri" spec="Sequence" taxon="OUS46025.1_putative_UDP-N-acetylmuramoylalanyl-D-glutamate--2_6-diaminopimelate_ligase_Ostreococcus_tauri" totalcount="20" value="MGAGR---------------------------------------------------RRGGGS-----------------------------------------------------------------------------------------------TRRA-------------------------------GRT-VG------------------------------ARW-----------------------------------------------------------------------------------------------------TREG------DGVDHGRAG----ARLEVVRA--------------S--------------------------------------------------------------------------------------------------A---A--NA--DA-EVDAEALLREIFADAE-V-D---------------------------------------------A-------EWYGVD-EDE-DVEISGIA-NDINALLSGDLFVCPVGG---A--AGASLAREAVAAGAVAIVASERVE--G-----------------VADVPCAVVANVDEALADIARVFYGDPSTALTAIALTGAVGKTTTSYLVKSVFEAADIKMGLVGSNGNYVRVDFEEDDLKLTTQGGVWESDEEDTTRDR-----TSTAPGWLAPYRGKYEFEE-L--GADALQFQQLTAGIADNGANAAVMEVSAEQVRRKATRGMNFDIVALTSFE--------GARKNYNGAD-SEYSSF-VADVFKVLE-NAETQRGVINIDEEDAD-L-CREYASGVPVVTYSTQIGNTAADVYPARVDFSLFE-TAIS--LSTPAGNVEVVLGLVGEHMIGPICCATAIGLAAEISLDVIAAGLEACEVIPGRMELV--DMGQDFSVLVDNANTPEGIERVIQSVRAANCRRVITVIGCEGDMGDERGERAVIGKVAHDMSDVLFITNDSPKTEDPYKILDDICGGFRNEIYENDKIKDEALFPFLKDMYEV-----H------------ENAQYECMRLQNLVRRYVMVDRFHAIRAAIGMAERDDVVLILGRGSKDYFVVGRE-----------KHWFDDVVEARDALQKIGAIQD-SGVDTHNLPWQSLAARATN-----PGAGN--LL---------G"/>
+                            
+        <sequence id="seq_PNH05610.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Tetrabaena_socialis" spec="Sequence" taxon="PNH05610.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Tetrabaena_socialis" totalcount="20" value="MLVKHG-----------------------------LG---RPP-ASAHSRAVTSCVPCPLHRAPL---------------------------------------------------------------------------------------ASVGLACPAPH----------------VESGRKLSVVAKARRGRPPAQPEPDEPGPGPDLPDDE-LFL---DDEFDEGEDTAYAEELDPMSRRLV-------------------------------------------------------------------------EPDQ----PEPDWDDD------GEYEEAEDE---DEAT-ETDR--------------D--GI------------------------------------------------------AADGDAG--------------------------------EP---S--TSYPEP-PDR-EFRASDLFGEAG-L-M--------------------------------------------DA-------ALWLA--SRYPDVGVTGVQ-SNPHLVVPGDVFVLHPGL--TE-DDDLYAIGAAVEKGATVVVAPTLQPDDINVEPWSGADPLKEPGMLPDDLPVVRMEDTSAAGSMLAAAFYGAPAREMVTVGVLGEHGKTTTAWLIRGVLEELGQTVGLMSN------IEHAIAEDRLDEDGYLWEATEEDPSVDR-----ESSVPFKLIPYEGKYEQFYGQ--ALPGLNAQKMLAGMHDRGAKVAVLEMGIPSLVIGTFDFVDINVAVVTSLPPTKPAPGEQQGRDAAKASSSEAAELIMGTLAVKFR-DSDAQVLVLNLDDPQAAGFLKRLDG-VVPVVTYSLT--NSKADVTAESIKSNIWE-TEVL--VKTPGGRLQFIINLLGRHNVSNLLAAVATGIALKAPLTSIVAGIEAVEI-PGRSEVL--DEGQDFSVVVDAARTPEHLAAMLEAIRQGGAKQIFTVFGCSGHE--DPTLRPRMGAVAHAKSDYVIVTNESPRLEDPAKVVADIVAGFPDDMVNRYSMY-A--YFPFQDQGRT-----P------------LWFEPYLQKAQRDNKRYIMEDRYSAIRAAIGTAGPDDVVLLAGKGHEDWVEHAGEDGDV------LTGWLDDRVEARNALSKLKYLKQIPAFNRDTLPWGSRIETLMETLSVDPGDFSRGLPTD-------E"/>
+                            
+        <sequence id="seq_PTQ33238.1_hypothetical_protein_MARPO_0091s0082_Marchantia_polymorpha" spec="Sequence" taxon="PTQ33238.1_hypothetical_protein_MARPO_0091s0082_Marchantia_polymorpha" totalcount="20" value="MAGLC--------------------------SAAGLGAARTCAPAR-LQQQ-QQQRNGPHLGSDFFPSPISFARSSALSRKIVRRQFVRSEQ-----------------------G--IQFSLGRYGGK-----SG-----SDGSICAGLRLWSVGECRAVPK------------------NAKEFDDYIDP------ANAEPLEVED---D--------------------------EEGISKF----EKV---------AQEAERVRKL-QEEEYTRMKPIF-LKAIGID-------------P--EDYKSAQDLQEEEEEE----ELAPEVTGAGED--DFYNVVNRAVASKRKPK-----PLNLKSAAA---R-----SFLDRDDDALDIVNDIGKVVSEESESE---LEEE-----EEDIVGIDD-----EEEDEEDDE-EEEEES-IELGDFADELDELGLDDFDEFDSDL---L--DDEFKP-PVY-KMTLAELLDEAK-V-T---------------------------------------------P-------LS--VE-GD-LDVEITGIQ-HDSREISTGDMFVCCIG--HSS--DGHLYSSEAVERGASVLVVSK------------------EVTLNKSVRALVIVEDTNSILSALAGAFYGHPSQKLSVIGLTGTNGKTTTSYLIRSMYEAMGLTTGLLGT------IAYYINN-----RTKL-------------------DAPN--------------T--TPDAVYLQQLMAKMVSSGTEACVMEVSSHALTLDRCKEVDFDVAVFTNLTR--------DHMDFHKDE-EEYRAA-KGRLFAKM-VDPEKHRKVVNIDDPNSSYFVAQGNP-AVPVVTFGLE--NTDADVYPLEVQLSLFE-TELL--VRTPKGNVEISSGLLGRHNVYNILAAVAVGVAVEAPLEHIVRGIEEVDAVPGRCELI--DEEQAFAVIVDYAHTPDALSRLLDTVRECGARRIITVVGCGGDR--DKGKRPIMAKIATDKSDVCIFTADNPRSEDPLDILDDMLAGVGWSMEEYLKWG-ESD---------------------------------YYPPLPNGNRLFVYDIRTIAVRAGVAMGEEGDAVVIAGKGHETYQII-----GT------EKEYFDDREECREALQHMDALHA-AGVDTSEFPWRVLES---------------------------T"/>
+                            
+        <sequence id="seq_QDZ19900.1_UDP-N-acetylmuramyl-tripeptide_synthetase_Chloropicon_primus" spec="Sequence" taxon="QDZ19900.1_UDP-N-acetylmuramyl-tripeptide_synthetase_Chloropicon_primus" totalcount="20" value="MATCRQ---------------------------------------G-LGGP-RGRRRLVLDGKGR----------------------------------------------------------------------------------------------V-------------------------------PA-----------------------------------------SSSPRRGRTT----SGSR--------------------------------------------------------------------------------LRGG------FPVRR------------VLEG--------------T--R--------------------------------------------------QRAERPTARVSAA-SEKSS------------------------SEQ------PAGAVV-PRV-S------VALSD-I-L--------------------------------------------P--------EA--DG-PAA-QLQVENLS-NDSRVIGSNCVFFCIEGT--QN--DGHDFAAQAAENGAIAVVASKQVDL-E-----------------GLDVPVLFVEDTQSRLAAASKAFYGDPSSKLKTVAVTGTNGKTTTTWLVRGILEEAGFITGMVGT------VEYALAEHRLDSEGKIWESGEEDPTLQM-----QQTLPAHIVPYFGKYEVQN-T--TPDALQVQKIMASMVNQGGEAVVMEASSHALAMGRCDNVDVNVGIFTNLS--------REHMDFHGDM-DSYEQA-KLRLFELIS-T--NGTGVVNLDDPVSASFIEVARRRGLKVLTFSANA-SSGADITCLSAELSLFQ-TDMVVGVRATGSEVEITSSLLGHANVSNILGAVAAGVAMGYPNDVIAGGIQSTEFVPGRYELI--NEGQDFAVLVDYAHTPDALANVLDDVKAMGAKRVITVFGCGGCR--DTGKRPLMGKIAHDKSDVVFVTSDNPRTENPDVVIDDIVSGFSAELYEKFQVDKELGLHWLQDIHNLDPVYIPETTTRRWEKFKYIGNRSRAQYLQNAVRRYVVQERYYAIRLAIGMAEEGDAVVIAGKGHEDYQILANDDYQA------VKSWFDDRVESYAALQEMVKIQA-AGWRTDELPWTWGKPELP------------IDPDDIE------"/>
+                            
+        <sequence id="seq_WP_190370564.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Anabaena_sp._FACHB-1237" spec="Sequence" taxon="WP_190370564.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Anabaena_sp._FACHB-1237" totalcount="20" value="---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKIRELLAVINHLEY---------------------------------------------S--------------KI-ADVEVTGIK-TNSHACTTGDLFIGMPG--TRV--DGGEFWQSAINAGAVAAIISPEAAL---------------KHPFKPSDPVIVVENINRLCAEVARAFYGYPGRKLKLVGVTGTNGKTTTTHLIEYFLNQASLFTALFGT------LYTRWSG-----FSQV--------------------ATH--------------T--TPFAVDLQQSLSEAVNAGCEFGVMEVSSHSLAQGRVFGCGFDVAVFTNLTQ--------DHLDYHKDM-EDYFAA-KALLFSD---DYLQGRAIINADDEYGQRLIARL-N-KQQVWTYSVN--NASADFWMSDLLYQPNG-VQGI--LHSPVGDVSFNSPLVGQFNLENLLAAIAAVVHFGIDLQLIADQIPHFSGVPGRMERVQITPKQNISVIVDYAHTPDSLESLLKAARPFIPGKMICVFGCGGDR--DRTKRPKMGKIAAELADIVVVTSDNPRTENPQKILEDILAGIPDTVQPI-----------------------------------------------------VMSDRATAIKTAILQAQPGDGVLLAGKGHEDYQIL-----GT------EKIHFDDREQAREALKQKMLV----------------------------------------------"/>
+                            
+        <sequence id="seq_WP_190950786.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Nostoc_punctiforme" spec="Sequence" taxon="WP_190950786.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Nostoc_punctiforme" totalcount="20" value="---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKLRELLTAVDSVEQ---------------------------------------------L-------P---SHPAL-GDAEVRGLK-TNSHACGVGDLFIGMPG--TRV--DGGEFWPSAIASGAVAAIISPQAAQ---------------KHPPTDEAVVISASNITQACAQIASAFYGYPGQKLKLVGVTGTNGKTTTTHLIEFLLNKANLATALMGT------LYTRWPG-----FEQT--------------------AVH--------------T--TPFAVELQQQLAEAVNAGNEFGVMEVSSHALAQGRVLGCKFEVSVFSNLTQ--------DHLDYHKDM-EDYFAA-KALLFSP---EYLKGRAIINADDSYGERLIASL-N-PEQVWSYSVN--NNNADLWMSDLSYEPNG-VSGT--LHTPKGDVAFRSPLVGQYNLENLLAAVGAVLHLGLDLQLVASVISEFPGVPGRMERVQISSQQDISVIVDYAHTPDSLENLLKAARPFIPGKIICVFGCGGDR--DRTKRPKMGKIAAELADVAVVTSDNPRTENPEKILEDILAGIPQTVQPK-----------------------------------------------------VIGDRAIAIRTAILQAQPGDGVLLAGKGHEDYQIL-----GT------EKIHFDDREHAREALQARL-G----------------------------------------------"/>
+                            
+        <sequence id="seq_WP_194018526.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Synechocystis_salina" spec="Sequence" taxon="WP_194018526.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Synechocystis_salina" totalcount="20" value="--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVKLGQLLASVPEVVT---------------------------------------------AAPWLAQEPD--RY-PA-LGEMVRGLS-TNSHACPPGTLFIGMPG--TRV--DGGEFWSGALGAGAIAAVVSEKALQ---------------KFPPQNGECVIAVPDLVPVCAGIAAAFYQHPARTLQLVGVTGTNGKTTTSHLIEYFLNQQQRASALLGT------LYTRWPG-----YQKT--------------------ATH--------------T--TPFATDLQRQLAEALQAGNQYAVMEVSSHALAQGRVLQCGFACAVFTNLTQ--------DHLDFHGTM-ENYFAA-KALLFEG---QYLKGRAVINKDDVYGQKLIDRL-P-SAQVYTYSVT--DSSADFYTKDLDYQPTG-VQGI--LVTPQEELPFQSPLVGQFNLANVLAAIASGLHLGLDPGAMVKDLLDFPGVPGRMEQVKIRPDQDISVMVDYAHTPDSLENALKAARPFIPGRLICVFGCGGDR--DRTKRPLMGNIAAQLADLAVVTSDNPRTEDPEQILADVVQGIDLEIKPW-----------------------------------------------------IIGDRATAIHKAIREAKPGDGVLIAGKGHEDYQIL-----GT------EKIHFDDREQAREALILRY-S----------------------------------------------"/>
+                            
+        <sequence id="seq_WP_211627413.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Leptolyngbya_sp._7M" spec="Sequence" taxon="WP_211627413.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_Leptolyngbya_sp._7M" totalcount="20" value="----------------------------------------------------M---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-GIP-L------TILAE-K-L--------------------------------------------NA-------SL--F--GKS-DGDVTNVT-HDSRQASEGTIFVAIKGS--TV--DGHRFVGDVMRRGAAGVISEFEAPD-------------------AFDGAWLQVANARVALAKAASLVNDDPSHKLDLIGITGTNGKTTTTYLCYALAEAEGIKPAMLTT------VEYRIGDRTE--------------------------------------EAVR-T--TPEASDTNRFLKQAVEEGCGFAAMEASSQAIDLHRCDWLRFRVAIFTNLS--------RDHLDYHLTM-ENYFDA-KKKLFDGRL-GERPGSCVVNIDDDWGIRLADELRANGQKVMTFSQNL-DKNADLSGDDINVSLLQGTSFL--LKTPIGERKITSPLVGRPHVYNMLAASAAALELGYGLDSIVKGISRCVGAPGRFERV--SHPGNFAVIVDYAHTDDALLNTLKTAKELATARIITVFGCGGDR--DKTKREPMGRIAGEYSDLAIITSDNPRTEDPLKIISEIEVGVKASGGNY----------------------------------------------------VAISDRREAIRLAINAAAPNDVVIIAGKGHENYQIIGND-----------KFHFDDREVALEAIEDRKD----------------------------------------K------"/>
+                            
+        <sequence id="seq_XP_001696935.2_uncharacterized_protein_CHLRE_12g519900v5_Chlamydomonas_reinhardtii" spec="Sequence" taxon="XP_001696935.2_uncharacterized_protein_CHLRE_12g519900v5_Chlamydomonas_reinhardtii" totalcount="20" value="MLAQQL------------------------------ARSVRRP-AAPPCTS-SPCTICPVVVRQP---------------------------------------------------------------------------------------ANKCHAPRIAP----------------VAPAPARQTLCAARRGRPPGGP----PEPTPEGPEPE-FFEDDDINYEDEAEDGEFVEQLDPHTRRLMGI--------------------------------------------------------------------AEQREDV----EEAGYEEY------EEYEEAEDEGALDDAA-EADR--------------D--GI------------------------------------------------------AADEDVG--------------------------------EP---S--TSYPEP-PDR-AFRAPDLFGEAA-L-F--------------------------------------------EA-------ALWLA--AHFPNIEVTGVQ-SNPHLVTPGDVYVHHEGL--TD-EDQVAAVSVALEQGAVLVVAPHLPKDSTG--LHVGEDPLE--GVVPDEVPLVRVKDSTEAGSRLAAAFYETPSRNMVTVGVVGLLGKTTTSWLVRGILEELGQTVGLMSS------IEHAIAEDRLDEDGYLWEPLEEDPSADR-----ESSVPFKLIPYEGKYEQHYGR--RLPGLNAQKVLAGMRDRGAGVAVVELQADGLMLGTYDFMSLNVAVVTSLSPRPGVPAAQQPAELVAAAADEVHAAIE-LLSARLV-DPETQALVLNADDPAAEQLLERLGG-AVPVVTYGVV--NKGADVVAESIKSNIWE-TELI--VRTPGGRLQIITNLLGRHNVANVLAAVATGVALKAPLASIVAGIEAVEI-PGRSEVI--DEGQEFSVVVDAARTPEALGDMLDALRAGGARQIFTVFGCSGNE--DASIRPRMGAVAHAKSDYVIITNENPRLEDPAKVVADIVAGFPDDMVNRYSAY-A--YFPFQDQGRT-----P------------LWFEPYLQKAQRDNKRYVMEDRYSAIRAAIGTAGPEDVVLLAGKGSEDWVEHADEDGSV------LTGWLDDRVEARNALSKLKYLKQIPRFSRETLPWGSRIEGLMETLAVDPAELSAAAVGGLE--GALD"/>
+                            
+        <sequence id="seq_XP_005851510.1_hypothetical_protein_CHLNCDRAFT_137921_Chlorella_variabilis" spec="Sequence" taxon="XP_005851510.1_hypothetical_protein_CHLNCDRAFT_137921_Chlorella_variabilis" totalcount="20" value="MQGSSKR----------------------------LLRAAAARPVL-AAGG-DAGDDLEEMRERR---------------------------------------------------------------------------------------DELLRIKE----------------------------DL-------------------------------------DVGLNTDEDEELAGITERLLKFGYLEDTGSLDEVVPGI--GSDG-TDEEYEEV---V-AELFS-------------------SDDDEEEEEEEEEDS----EESEDSEE------SEEEEEEEEGDVLTAA-DRESEVAPRRKVARK---PPSDLAID--------S--------IVLEAQRGGTQDMRNMGMFATSSPGVGGEQGEPGANGEQEE--------------------------------AP---Q--ARFPEP-PAR-SYRLAELLRLAG-Y-EEQASAQPGMLADSGRSQGPWPHRRQLAMAAAAAYWRRLSPSSIRST-------AVLQA--ASAPDVDIRNILTCNSISGGEDSLYVCVPSA--DGQCDGHDWADEASEMGAVAVIAGRPLP--D------------------ALLPVVVVDDVAAALGSLADAFYERPSRRMRTVGVVGSYGKTTTAWLSRGMFEETAERCGMIGTI------EYALEEVRLTEEGEVWVAEEQDVTLQAGGGLRDCSSPFHITPYEGKYPQVP-T--TPDALHMQKALAGCADRGASVALVECDPASLGDGRADHVDFDVLVYTNSY--------AEKEAGAEGGSQACHDR-VAELFRRVQGDVERQRAVINIDDPLGAELAQAAAAAGATVLTYSAD--SRDADIYAEKAKSSIWE-TEVL--VNTPLGRLQIITPLLGRSNVCNVLAAVSTGIACGVPLKNIVAGIEAVDIIPGRCEII--DEGQPFSVVVDSASTPEQLSRLLDEVKEAGSKRVLLVFGCPGT-----------TSMAHYKGDAIFITNDSPGASWPSDVIADMVGGLPTEVTNKYTGT-A--YPFLQDPHRV-----P------------HWFQKYMLQYQSVVGVYVIEDRFQAIRVAIGMARARDVVVVAGKGHIDWQEYWDGAEFDLEERTTLKSWFDDRVECRNALSKLPYLSGIKDLNTDVLPWTRYPEERDIL-SL--EGISEAPVGDF------R"/>
+                            
+        <sequence id="seq_XP_021969154.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic_Helianthus_annuus" spec="Sequence" taxon="XP_021969154.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic_Helianthus_annuus" totalcount="20" value="-MFS----------------------------------SLSS-PFS-LSLS-KPHLHPPLRH------------------RLPPFFHRT----------------------------------------------------------------------NLTL----------------FAINRDGKHYPNP------ADIDPPEAPED--T--------------------------VHGVSKF----KQL---------DLRIARARKA-QDAQYEKDQSIF-LKAIQDV-------------E--DAPDESAST----------------ANDDSEG--DLYSEIDDSIAL-KRKE------FVKKGLLKP----------NPKKDESKEEIKD-------EVADELQPQEEDD-LDEIDELEELKG--V--GEDSEAEN--SDLDI-D-DDLGPGNSS-VKSEFESEFDAFRK---G--EVRIVE-PKC-KMTLAELLDESK-V-V---------------------------------------------P-------VS--VL-GN-LEIEITGIQ-HDSRLVEPGDLFVCCVG--KKT--DGHLFLTEADKRGAVAVVASKE----------I------DIEETLGCKALVLVEDTSSVLATLAASFYKHPSKNVAMIGITGTYGKSSSAYLIKGMYEVMGLRTGMITN------VAHYIHG-----ENQL-------------------ETKN--------------T--IPDGVSRQKLMAKMVHNGTEALVMEASSHELESGKCDEVDFDIAVFTNLST--------DHLDTHGSE-EEYKNA-QLKLFGRM-VDPTRHRKVVNIDDASAPLFIAQGNQ-DVPVVTFALE--DKKADVHPLQFDLSLFE-TQVL--VDTPKGILEISSGLLGRQNIYNILAAVAVGIAVEAPLEDIVRGIEEVDVVPGRCELI--DEEQTYGVVVDYANTPDGLSRLLDNVRELNPKRIITVIGCPGET--ERGKRPVMTKIATDKSDVTMLTSDNPRNEDPLDILDDMLAGIGLTMQDYLKHQ-ADD---------------------------------YHPPLANGHRLFLHDIRRVAVRSAVAMGEEGDIVVVTGKGHETYDTV-----GD------TTEFFDDREECREALQYVDELHQ-SGIDTSEFPWRLPESY---------------------------"/>
+                            
+        <sequence id="seq_XP_024364396.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic-like_Physcomitrium_patens" spec="Sequence" taxon="XP_024364396.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic-like_Physcomitrium_patens" totalcount="20" value="MALQC---------------------------AHKLVVPSQYPPVS-PSES-TGHSLRFSQS-CLVKSSVQLRQNGTSFGRGVQRWRLSVAA----------------------EALG-NVKGGFGRRS-----LG-----HRSSVE-GVNSRDLVRCRTRRR----------------NDDTKEFDDYINP------AKAEPMEAMDA--E--------------------------DEDMSKF----DRV---------VREAEKVRKS-QEEEYKRTKPVF-MRAIGLG-------------D--QVGEEEEEEEDE--EE----IDE-EDDISDFD--DTFELVDAAIASKKSQT-----KSN-----------------GRKPAASKPK------PVIDEDEEE---LDPE----EVADLEDIDD-----AIPLDEELD-EDEDGF-INFKD--ETFGGLRFDDDEVYNGDE------GEAMME-PTY-RMTLAELLDEAR-V-T---------------------------------------------P-------VA--VE-GN-LDIEITGIQ-HDSRLVIPGDLFVCVKG--LKS--DGYEFAHQAIEKGAVAIVSSS------------------EVLPAEGLEASVVVEDTNILLSGLAGAFYGHPSKNLAVVGITGTNGKATTSYLIRSIYEAMGLQAGLLGT------INYYING-----KKKL-------------------EATH--------------T--TPDAVHLQKHMASMVHHGTDACIMEVSSHAMHLGRCKEVDFDVAVFTNLTH--------DPEDFHKSE-DEYKEA-SGKLFAKM-VNPEKHRKIVNIDDPQSDYFVTQGNQ-DVPVVTYAMG--NKNADVYPLEVQLSLFE-SELL--VRTPRGNLEISSGLLGRHNVYNILAAVAVGIAVDAPLEDIVRGIEEVDAVPGRCELI--DEEQAFAVIVDHANTPDGLSRLLDTVRECGPRRIITVLGSQGDR--DKAKRPLMAKIATDKSDVCIFTSDNPRSEDPLDVIDDMLAGVGWSMEEYCKWG-EDD---------------------------------YYPPLPNGHRLFCYEIRTIAVRAGVAMGEEGDAVVIAGKGHNTYEII-----GD------NKEYFDDREECREALQHVDDLHA-AGVDTSEFPWRVPES---------------------------N"/>
+                            
+        <sequence id="seq_XP_024517730.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic_Selaginella_moellendorffii" spec="Sequence" taxon="XP_024517730.1_UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2_6-diaminopimelate_ligase_MurE_homolog_chloroplastic_Selaginella_moellendorffii" totalcount="20" value="-----------------------------------MALAAFSCPLP-LSRV-LAQPRAGWNG-----------------ARVCSDRSVAVCAT---------------------RSRG----------------------------------------RKPRR----------------GGDGEGEHRYADS------AGNDPPEAEGP--E--------------------------E----AF----QPR---------KNGGPDQDKA-AVNGVANSSSMF-NKLKDLG-----------------------------------------------------ERYEASKVSKRRAA-----NVV-----------------VKSSEES------------DGSEEE----EAK----DESAQASIPE-----EAPPPPKVK-VDKDD---------PSFN-LELG-------EL---Q--ESVIKE-PRF-KMTLTELLDEAK-V-V---------------------------------------------P-------LS--VE-GD-LDVIISGIH-HDSRQVNSGDMFVCCIG--ETS--DGHSFVPQAAEQGAVVIVATK------------------EVEIGESVKAVVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKTTTSYLLRSIYESMGLKTGLIGT------ISYSIHG-----KHKQ-------------------DAPH--------------T--TPDAVYLQKLMATMVHNRTEVCVMEVSSHALAQDRCKEIDFDVAVFTNLTR--------DHMDYHENE-DSYKEA-KGKLFASM-VDPARHRKVVNIDDPNAGYFVSLGNP-KVPVVTFGME--KS-ADVHPLDIQLTLFE-TNVL--VKTPRGNIEISSGLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELV--DEEQPFAVIVDYAHTPDALSRLLDTVRECGPRRIITVVGCGGDR--DRGKRPVMAKIAAAKSEVCIFTSDNPRSEDPLEILDDMLAGVGWSMDEYLKCG-ERS---------------------------------YYPPIWNGNRVFVYDLRKIAVRAAVAMGEEGDAVVIAGKGHEKYQII-----GK------ERKYHDDREECREALLHVDMLHA-SGIDTSEIPWKFPGHK--------------------------L"/>
+                        
+    </data>
+        
+
+
+
+
+
+    
+
+
+
+
+
+    
+
+
+
+    <map name="Uniform" >beast.base.inference.distribution.Uniform</map>
+
+    
+
+    <map name="Exponential" >beast.base.inference.distribution.Exponential</map>
+
+    
+
+    <map name="LogNormal" >beast.base.inference.distribution.LogNormalDistributionModel</map>
+
+    
+
+    <map name="Normal" >beast.base.inference.distribution.Normal</map>
+
+    
+
+    <map name="Beta" >beast.base.inference.distribution.Beta</map>
+
+    
+
+    <map name="Gamma" >beast.base.inference.distribution.Gamma</map>
+
+    
+
+    <map name="LaplaceDistribution" >beast.base.inference.distribution.LaplaceDistribution</map>
+
+    
+
+    <map name="prior" >beast.base.inference.distribution.Prior</map>
+
+    
+
+    <map name="InverseGamma" >beast.base.inference.distribution.InverseGamma</map>
+
+    
+
+    <map name="OneOnX" >beast.base.inference.distribution.OneOnX</map>
+
+    
+
+    <run id="mcmc" spec="MCMC" chainLength="1000000" storeEvery="1000">
+            
+        <state id="state" spec="State" storeEvery="5000">
+                    
+            <tree id="Tree.t:pap11_align_name" spec="beast.base.evolution.tree.Tree" name="stateNode">
+                            
+                <taxonset id="TaxonSet.pap11_align_name" spec="TaxonSet">
+                                    
+                    <alignment idref="pap11_align_name"/>
+                                
+                </taxonset>
+                        
+            </tree>
+                    
+            <parameter id="birthRate.t:pap11_align_name" spec="parameter.RealParameter" lower="0.0" name="stateNode">1.0</parameter>
+                
+        </state>
+            
+        <init id="RandomTree.t:pap11_align_name" spec="RandomTree" estimate="false" initial="@Tree.t:pap11_align_name" taxa="@pap11_align_name">
+                    
+            <populationModel id="ConstantPopulation0.t:pap11_align_name" spec="ConstantPopulation">
+                            
+                <parameter id="randomPopSize.t:pap11_align_name" spec="parameter.RealParameter" name="popSize">1.0</parameter>
+                        
+            </populationModel>
+                
+        </init>
+            
+        <distribution id="posterior" spec="CompoundDistribution">
+                    
+            <distribution id="prior" spec="CompoundDistribution">
+                            
+                <distribution id="YuleModel.t:pap11_align_name" spec="beast.base.evolution.speciation.YuleModel" birthDiffRate="@birthRate.t:pap11_align_name" tree="@Tree.t:pap11_align_name"/>
+                            
+                <prior id="YuleBirthRatePrior.t:pap11_align_name" name="distribution" x="@birthRate.t:pap11_align_name">
+                                    
+                    <Uniform id="Uniform.1" name="distr" upper="Infinity"/>
+                                
+                </prior>
+                        
+            </distribution>
+                    
+            <distribution id="likelihood" spec="CompoundDistribution" useThreads="true">
+                            
+                <distribution id="treeLikelihood.pap11_align_name" spec="ThreadedTreeLikelihood" data="@pap11_align_name" tree="@Tree.t:pap11_align_name">
+                                    
+                    <siteModel id="SiteModel.s:pap11_align_name" spec="SiteModel">
+                                            
+                        <parameter id="mutationRate.s:pap11_align_name" spec="parameter.RealParameter" estimate="false" lower="0.0" name="mutationRate">1.0</parameter>
+                                            
+                        <parameter id="gammaShape.s:pap11_align_name" spec="parameter.RealParameter" estimate="false" lower="0.1" name="shape">1.0</parameter>
+                                            
+                        <parameter id="proportionInvariant.s:pap11_align_name" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter>
+                                            
+                        <substModel id="Blosum62.s:pap11_align_name" spec="Blosum62"/>
+                                        
+                    </siteModel>
+                                    
+                    <branchRateModel id="StrictClock.c:pap11_align_name" spec="beast.base.evolution.branchratemodel.StrictClockModel">
+                                            
+                        <parameter id="clockRate.c:pap11_align_name" spec="parameter.RealParameter" estimate="false" lower="0.0" name="clock.rate">1.0</parameter>
+                                        
+                    </branchRateModel>
+                                
+                </distribution>
+                        
+            </distribution>
+                
+        </distribution>
+            
+        <operator id="YuleBirthRateScaler.t:pap11_align_name" spec="kernel.BactrianScaleOperator" parameter="@birthRate.t:pap11_align_name" upper="10.0" weight="3.0"/>
+            
+        <operator id="YuleModelTreeRootScaler.t:pap11_align_name" spec="kernel.BactrianScaleOperator" rootOnly="true" scaleFactor="0.5" tree="@Tree.t:pap11_align_name" upper="10.0" weight="3.0"/>
+            
+        <operator id="YuleModelUniformOperator.t:pap11_align_name" spec="kernel.BactrianNodeOperator" tree="@Tree.t:pap11_align_name" weight="30.0"/>
+            
+        <operator id="YuleModelSubtreeSlide.t:pap11_align_name" spec="kernel.BactrianSubtreeSlide" tree="@Tree.t:pap11_align_name" weight="15.0"/>
+            
+        <operator id="YuleModelNarrow.t:pap11_align_name" spec="Exchange" tree="@Tree.t:pap11_align_name" weight="15.0"/>
+            
+        <operator id="YuleModelWide.t:pap11_align_name" spec="Exchange" isNarrow="false" tree="@Tree.t:pap11_align_name" weight="3.0"/>
+            
+        <operator id="YuleModelWilsonBalding.t:pap11_align_name" spec="WilsonBalding" tree="@Tree.t:pap11_align_name" weight="3.0"/>
+            
+        <operator id="YuleModelBICEPSEpochTop.t:pap11_align_name" spec="EpochFlexOperator" scaleFactor="0.1" tree="@Tree.t:pap11_align_name" weight="2.0"/>
+            
+        <operator id="YuleModelBICEPSEpochAll.t:pap11_align_name" spec="EpochFlexOperator" fromOldestTipOnly="false" scaleFactor="0.1" tree="@Tree.t:pap11_align_name" weight="2.0"/>
+            
+        <operator id="YuleModelBICEPSTreeFlex.t:pap11_align_name" spec="TreeStretchOperator" scaleFactor="0.01" tree="@Tree.t:pap11_align_name" weight="2.0"/>
+            
+        <logger id="tracelog" spec="Logger" fileName="$(filebase).log" logEvery="1000" model="@posterior" sanitiseHeaders="true" sort="smart">
+                    
+            <log idref="posterior"/>
+                    
+            <log idref="likelihood"/>
+                    
+            <log idref="prior"/>
+                    
+            <log idref="treeLikelihood.pap11_align_name"/>
+                    
+            <log id="TreeHeight.t:pap11_align_name" spec="beast.base.evolution.tree.TreeStatLogger" tree="@Tree.t:pap11_align_name"/>
+                    
+            <log idref="YuleModel.t:pap11_align_name"/>
+                    
+            <log idref="birthRate.t:pap11_align_name"/>
+                
+        </logger>
+            
+        <logger id="screenlog" spec="Logger" logEvery="1000">
+                    
+            <log idref="posterior"/>
+                    
+            <log idref="likelihood"/>
+                    
+            <log idref="prior"/>
+                
+        </logger>
+            
+        <logger id="treelog.t:pap11_align_name" spec="Logger" fileName="$(filebase)-$(tree).trees" logEvery="1000" mode="tree">
+                    
+            <log id="TreeWithMetaDataLogger.t:pap11_align_name" spec="beast.base.evolution.TreeWithMetaDataLogger" tree="@Tree.t:pap11_align_name"/>
+                
+        </logger>
+            
+        <operatorschedule id="OperatorSchedule" spec="OperatorSchedule"/>
+        
+    </run>
+
+    
+
+</beast>

runs/BEAST/xml_files/g31563_g41182_1mil.xml

+<?xml version="1.0" encoding="UTF-8" standalone="no"?><beast beautitemplate='Standard' beautistatus='' namespace="beast.core:beast.evolution.alignment:beast.evolution.tree.coalescent:beast.core.util:beast.evolution.nuc:beast.evolution.operators:beast.evolution.sitemodel:beast.evolution.substitutionmodel:beast.base.evolution.alignment:beast.pkgmgmt:beast.base.core:beast.base.inference:beast.base.evolution.tree.coalescent:beast.pkgmgmt:beast.base.core:beast.base.inference.util:beast.evolution.nuc:beast.base.evolution.operator:beast.base.inference.operator:beast.base.evolution.sitemodel:beast.base.evolution.substitutionmodel:beast.base.evolution.likelihood" required="BEAST.base v2.7.3" version="2.7">
+        
+
+    <data
+id="g31563_select"
+spec="Alignment"
+dataType="aminoacid"
+name="alignment">
+                            
+        <sequence id="seq_4J7R_A_Crystal_Structure_of_Chlamydomonas_reinhardtii_Isoamylase_1_(ISA1)_Chlamydomonas_reinhardtii" spec="Sequence" taxon="4J7R_A_Crystal_Structure_of_Chlamydomonas_reinhardtii_Isoamylase_1_(ISA1)_Chlamydomonas_reinhardtii" totalcount="20" value="---MGS---S---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HH------------------------------------------------------------------HHHHS----------------------S---G-----------LVPRG-----------S-----------------HMVELE---------------A-----------------------------------PTLS--SSP--------ATVSTKKLF---------------------CEPSGQPASTA-----YGPALTG----RPAPLGASIDAD-T--------------------------G-AINFSVF-SSSAESVSLVLF----TEADLNA------------------------------------------------------------------GRATFEIPLDPYVNRTGDVWH-IMLPD-LR-------------DD-LL--YGY-RVEGVHQE-----EDKDYPGMRH--DKRRVVLDPYAVA------------------------------V-LNRRRWG------Q-----MGPNLPYGEEGVLGV-MPTW-------------------------------PQAAAA-LP----------AARGSA-----FDW---EGD--TPL--NL--PMESLVIYEAHVRGFTAHASSGV-------AAPGTYAGMVE-RLDYLKSLGVNAIELLPVFEFNELEYYSQIPGSDQYRFNFW--GYSTVNYFSPMGRFSAAVGQGAPARASCDEFKQLVKECHRRGIEVILDVVFNHTAEGN--ERGP-TISF-R---GLDN-----RVYYMLAPG----------G-EYY--N--------YS-----GCG---NTLNCNQPVVRQFILDCLKHWVTEYHVDGFRFDLASILTRAHSAWHPQQYDQETGQRVAMSSGGAIVTAEGIMTDGAG-----VPTGYPLADPPLVE-SISEDPVLRNTKMIAEAW-DCDG-LNQVGAFPHYGGRWSEWNG---KFRDVVRNFIKGTD-----GPWAGDFASAICGSPN----------IYANNTPHETDWWANNGGRQWKGGRGPHA----SINFVAAHDG-----FTLADMVAYNNKHNEANGENN----RDGEQHNNSWNCGE---EG--PTTKW---EVNRLRQRQMRNL-TGALLLSCGVPMINMGDEYGHSKNGNNNTYCHDS-----------ELN--YLRWDQLAE--D---PHGFNRFVRLLIHFRR-----------------------ATPALQRTTFVNDKDIQWHGELPNTPDWT-DTSRLVAFTLHDG----------------------------------------------------------KGGGLYVAFNTSHLPKLLQLPKW-G-GRVWQPLVDTSKVAPYD---FLA--------VDG--------VLSAEDVAAARRQMAMWTADHTYPVLPWSCIVLQSAPEDPAATS-MI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K--------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_AAP85534.1_isoamylase_Chlamydomonas_reinhardtii" spec="Sequence" taxon="AAP85534.1_isoamylase_Chlamydomonas_reinhardtii" totalcount="20" value="MLLQAP---G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LAPG------------------------------------------------------------SARRQAACSVAR----------EATNVRIVTAPALTPGRAGVSGRRILPPSR-----------V-----------------VSVELE---------------A-----------------------------------PTLS--SSP--------ATVSTKKLF---------------------CEPSGQPASTA-----YGPALTG----RPAPLGASIDAD-T--------------------------G-AINFSVF-SSSAESVSLVLF----TEADLNA------------------------------------------------------------------GRATFEIPLDPYVNRTGDVWH-IMLPD-LR-------------DD-LL--YGY-RVEGVHQE-----EDKDYPGMRH--DKRRVVLDPYAVA------------------------------V-LNRRRWG------Q-----MGPNLPYGEEGVLGV-MPTW-------------------------------PQAAAA-LP----------AARGSA-----FDW---EGD--TPL--NL--PMESLVIYEAHVRGFTAHASSGV-------AAPGTYAGMVE-RLDYLKSLGVNAIELLPVFEFNELEYYSQIPGSDQYRFNFW--GYSTVNYFSPMGRFSAAVGQGAPARASCDEFKQLVKECHRRGIEVILDVVFNHTAEGN--ERGP-TISF-R---GLDN-----RVYYMLAPG----------G-EYY--N--------YS-----GCG---NTLNCNQPVVRQFILDCLKHWVTEYHVDGFRFDLASILTRAHSAWHPQQYDQETGQRVAMSSGGAIVTAEGIMTDGAG-----VPTGYPLADPPLVE-SISEDPVLRNTKMIAEAW-DCDG-LNQVGAFPHYGGRWSEWNG---KFRDVVRNFIKGTD-----GPWAGDFASAICGSPN----------IYANNTPHETDWWANNGGRQWKGGRGPHA----SINFVAAHDG-----FTLADMVAYNNKHNEANGENN----RDGEQHNNSWNCGE---EG--PTTKW---EVNRLRQRQMRNL-TGALLLSCGVPMINMGDEYGHSKNGNNNTYCHDS-----------ELN--YLRWDQLAE--D---PHGFNRFVRLLIHFRR-----------------------ATPALQRTTFVNDKDIQWHGELPNTPDWT-DTSRLVAFTLHDG----------------------------------------------------------KGGGLYVAFNTSHLPKLLQLPKW-G-GRVWQPLVDTSKVAPYD---FLA--------VDG--------VLSAEDVAAARRQMAMWTADHTYPVLPWSCIVLQSAPEDPAATS-MI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K--------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_AAU01394.1_putative_1_4-alpha-glucan_branching_enzyme_2_Toxoplasma_gondii" spec="Sequence" taxon="AAU01394.1_putative_1_4-alpha-glucan_branching_enzyme_2_Toxoplasma_gondii" totalcount="20" value="---MLG---GLPSPSRPRVVSGGLAVSSGAANSD-----------------CRPVERGPSPSTEGKETRGQREDTDDEEAVALAC---HKGSLFSQEERGLSLPLSPVEEESGGDSGS-----EFKREEVSPSLHREPGERVAPGKEEREEEHGDPSAEV----------------------------------------PSSAEHKMPSTVFQSKGGLPGFFAALLGGKEADGAAGPP----------------------------------------------------------PRPPEAPVSPF--R----------PQGDGETESHESAVSAGPSASSSSSSLSSSS-----------FSSSSCTALKTRG----------------------S--------------------------------SEEE---GWE--TRVEARGVRTRNEAQEGGPQ-SVSHGLERSEENALEA----RETQELEETESR----QLLRDHGGKMGA-C---VLRD-SD---------------------------EDLCLFRLW-GPHVDRCWVQLN----P-----------TK-----------------------AG-ES-----------------------PRRFELK---------------NEGNALWGTVLRG-VP-------------S--R-HFRCP-L------------SI--P--SLG--YS-G---DPYAR------------------------------HT-DF---F--------------SNTCYV-TDASRFPWKHLQ---------------SFDP-----------------------------------------------------------P--TWNKLIIYELHPGTFSPAS-----------ADRTVFETLVD-KLDHIRSLNFNAVEFLPVQEFGG----------------EW--GYNPRLLLATHGKY----GTP-------DQLRKLVDECHRKGLAVIFDLVLNHGSAKL--NS-LW--NW-DGYGKDAS-----GGIYFEG----------GGE-------SG-------------W-G---RKFSFHKREVRDMILAAALCFIEEYGADGLRLDSVHSMPWDL--------------------------------------------------------LQELT------HAVRSKHPSKIL-IAEV--------------T---PENPQICN-----SAGFDSCWIHSAYYDA-I-KVTRGQDGNHH-------------------------------LDMLRAMIDVH---RGFRMSH--QGVNSLLGSHDQAGNKQGGHTDGR-----------AG---RYFVDLF-GGRNNWHSRAQCRMW-YSLQAVCRGLPMMFMGTETHQDKWWNVDEQH--------------K-----MNWNFVENHDPL--AEQMMNLVAAANKLRLSFPSLTDDHAPVRFCHL----------------------DYQNRV-------------LGFVRGS-------------------------------------LLVVLNCS-ESQWEGRDYEVQ--------------------TDC--VNR-KFKQVFNSQAA----EFGGWEASWSSADRN------------LSSSVH----------ARLPVNLPKWSVTVYE-RQE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_ACY56095.1_isoamylase_Oryza_sativa_Indica_Group" spec="Sequence" taxon="ACY56095.1_isoamylase_Oryza_sativa_Indica_Group" totalcount="20" value="---MAS---L---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PHCL----------------------------------------------------------SARPLVVAAAPG------------RPGPGPGPWLRGGARRRNAAFSAGNAGRRV-----------G------------------LRRSV---------------A-----------------------------------SAVE--VGVGEDEE-GVEEEEEEVEA---------------------VVMPERYALGG-----ACRVLAG----MPAPLGATALDG------------------------------GVNFAVY-SAGASAASLCLF----TPDDLEA------------------------------------------------------------------DEVTEEVPLDPLFNRTGNVWH-VFIEG-EL-------------HN-ML--YGY-RFDGMFAP-----HC----GQYF--DVSNVVVDPYAKA------------------------------V-ISRGEYG------V-----PGPG------------GDCW-------------------------------PQMAGM-IP----------LP-YST-----FDW---QGD--LPL--RY--PQKDLVIYEMHLRGFTKHSSSNV-------EHPGTYIGAIS-KLDYLKELGVNCVELMPCHEFNELEYFSCS-----SKMNFW--GYSTINFFSPMIRYSSG-GIRNCGRDAINEFKTFVREAHKRGIEVIMDVVFNHTAEGN--EKGP-ILSF-R---GIDN-----STYYMLAPK----------G-EFY--N--------YS-----GCG---NTFNCNHPVVREFIVDCLRYWVTEMHVDGFRFDLASIMTRGCSLWD-----------------PVNVYGS--PVEGDM-----TTTGTPLATPPLID-MISNDPILGDVKLIAEAW-DAGG-LYQVGQFPHWK-IWSEWNG---KYRDIVRQFIKGTD-----GF-AGGFAECLCGSPH----------LYQA------------------GGRKPWH----SINFVCAHDG-----FTLADLVTYNKKYNSSNGEDN----RDGENHNLSWNCGE---EG--EFAGL---SVKRLRKRQMRNF-FVSLMVSQGVPMFYMGDEYGHTKGGNNNTYCHDH-----------YVN--YFRWDKK-E--E---SSDLQRFCSLMTKFRK-----------------------QCESLGLADFPTAQRLHWHGHQPGKPDWS-ETSRFVAFSTKDE----------------------------------------------------------TKGEIYVAFNASHLPAVVGLPER-P-GYRWEPLVDTGKPAPYD---FLT--------DD----------LPDRAH--AVHLFSHFLNSNLYPMLSYSSIILELQPD---------------------------------------------------------------------------------------------------------------------D----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_BAA01617.1_1_4-alpha-glucan_branching_enzyme_partial_Oryza_sativa_Japonica_Group" spec="Sequence" taxon="BAA01617.1_1_4-alpha-glucan_branching_enzyme_partial_Oryza_sativa_Japonica_Group" totalcount="20" value="-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGYFAPTLRY----GSP-------DDLKYFIDRCHAANIGVILDWVPGTFPKDD--WALAR--FF-DG----TA-----LY-EHADPRL-------GEH-------MD-------------WGT---YIFYYGRNEVRSFLLSNAYYWLREFHIDGLRVDAVASMLYLDY-SR-------------------KDGE-WL-----P-----NAYGGRENLDVIEF-LKQLN------VMVGERFPGVLT-IAEE--------------S---TAWPAVSRPVYAGGL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_CBr_g31563_1_4-alpha-glucan-branching_protein" spec="Sequence" taxon="CBr_g31563_1_4-alpha-glucan-branching_protein" totalcount="20" value="---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYSQLC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPGLG-----------------------------AILDGQGG----------------------------------------------CVFRVW-APNAEAAFIALH----D------------E-----------------------AS-SV-----------------DGQEGTVKMIAME---------------KQGAFW-AQRVRN-VR-------------AG-D-KYHYVFR------------HQ--G--VDY--HR-R---DARAR------------------------------HT-DF---N--------------SDACII-TDPT----YEWY---------------PFQT--------------------------------------------------------------PAFEEMIIYQLHVGAFTGR-----------DGAGSFMEAEG-KLDHIKGMGFNTIQLMPVHEFSG----------------EW--GYNPRLLCAIHQKY----GTP-------EQLRHFVNECHIRGIAVIFEVVLNHMATNL--NS-LW--AY-DGLNTEDD-----GGLYFDR----------AFD-------TG-------------S-S---RGFAYEEREVREMISDAVRMFLSEYKADGLRIHAVHNTPREV--------------------------------------------------------LEDMT------STMHEEFPGKIL-ISDV--------------T---PENPKIVS-----RTGFDSTVIHSTYFDM-R-KHMRGD---LD-------------------------------GRKLEKAIGLH---YGFTKPT--QCIKHFLGAHDHIGDRNDGMFDAA-----------IDGFHRYAVDLF-GGRAKWEANAAARAW-YMVMTMSAGIPLLFMGTEFSQDGWWGVQPDE--------------C-----VNWEKAE--DDT--GKTMMKLVKAANEFRRESPAVLH--GTVDVVHY----------------------DENHGI-------------IGFWRKSE---------------------------------KEWLFVVANLS-SYQWSEEEYEVR--------------------VGNCGTGH-KFIEVFNSQDA----QYGGWEGSGNAGKKL------------KG--NG----------RRISINLPQWSVLIFE-PTD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_EFJ37770.1_hypothetical_protein_SELMODRAFT_437348_Selaginella_moellendorffii" spec="Sequence" taxon="EFJ37770.1_hypothetical_protein_SELMODRAFT_437348_Selaginella_moellendorffii" totalcount="20" value="---MAW---SV--------------------TQA-------------------------------------------------------------------------------------------------------------PAGRASCICPRGIGGSG----------------------------------------GIGAAASSSQALRSS-ARRRKRVALCCGSPLLGRALSLS----------------------------------------------------------CHVHGKHYSRP--S----------TRVSCADPVSPAESTAASTATASKDLLEP-S-----------KADHSMEEQTMEIA-KQIQAFRDGSLKLKEQD-----------------------------------AALPKVVPPPG--DGQRIYEIDPYLKNYRDHLE---------------------YRYSQYKAKVD-----AINKHEG----GLEAFSRGYE-KFGF---------------------NRTAA-GITYREW-APAAKSASLMGD---------------FNN-----------------------WN-P------------------------NADMMKK---------------NEYGVWE-LFLPNNADGS-----------AA-IP--HGS-RVKIH--M-----ET--A--SGV-KDA-I---PAWIK------------------------------FAVQA-------------------------------------PGE-------I-PYN------------------GI-Y-Y----------DPPPEER-----YEF---K----HPR--PK--RPNSLRVYEAHVGMSSTEP------------KVNSYSAFRDDVLPRIKGLGYNAVQLMAVMEHAYYG--------------SF--GYHITNFFAVSSRC----GTP-------DELKSLIDKAHELGLFVLMDVVHSHCSNNV--LDGLN--MF-DG----TD-----SQYFHSGAR--------GYH-------WM-------------WDS---RLFDYSSWEVLRFLLSNLRWWMEEYKFDGFRFDGITSMMYTHHGLQ------------------MTFTG-QY-----S-----EYFGMTTDVDAVVY-LMLAN------DLLHALYPQTIT-VAED--------------V---SGMPTLCIPVADGGIGFD-YRLQMAIADKWI-DILE---------KLK---------------------DEEWN----MGNIVFT---L-TNRRWMEKCISYAESHDQALVGDKT--LAFW-----LMDKDM---YDHMALDRPSTPRIDRGIALHKMIR-LITMALGGEGYLNFMGNEFGHPEWIDFPRSDQKLPNGKFVPGNKNSFDKCRRRFDLGDA--DYLRYRGLQEFDRAMQQLEAKYEFMVA--PHEYVSRK----------------------NEGDKI-------------IVFEKGD-------------------------------------LVFVFNFH--WQKSYTDYRV----------------------GCLK-PG-NYKVVLDTDER----LFGGFGRLDHSAVFHTN--------EGWYDDRP----------QSFQVYSPCRTAVVYA-PGLSQRVAMADSSWDDAALITAFNSAVGKYQERHSSKESDGKSSHQE-KIESASQQDQAAAEGSSQHADSSFVDPSSYYPYPYPQPHPSYPYPAFVYPVPAYACAPPPSHCCHHSCCHSSSTQSSRSDDPSFETLKLAILQSLSQLPPDKQLSLEDNAEVLIAWFNAGFRTARSPSRVVPISLFLIYWAERWLDQGFLPRTSESKKEAFRKYLEASGVLDSLTKVLVALYEENDKPPLAIDFIQHNLGGYTNEEYTKLKGERDELQLKYNELVAAHEELGRKFEE-LQLQLPPP-E---EAPPVEGAPP-A"/>
+                            
+        <sequence id="seq_GAQ78433.1_alpha-amylase_Klebsormidium_nitens" spec="Sequence" taxon="GAQ78433.1_alpha-amylase_Klebsormidium_nitens" totalcount="20" value="--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGGVESSPGGAEDG----QSGHKEVER-GE--------------------------------G-----------LTKHP----P----SPD---K---PKVQLTHE-----------------------------------------------------------------KPSVED-SVAAK-IV-------------EQG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEILIQGFNWES----------HH-RNWYQTLLE-KVPELKAAGFTGIWLPPASDSLA----------------PQ--GYLPKDLYCLNSAY----GSS-------DQLRHLLRTLKAAGIRPIADIVINHRIGSAQGNGGQW-NRY-E---------GMRMAWDETAVTSD--SYGGLGNPGTG--E--------TF-----EGA---PNIDHSQEHVQQDITEWLRWLKDDVGFSGFRFDYAKGYSPDF-V-K-------------------KYIE-AVR-PDFA----VGEYW-----D--ACSY--------------GPEPESVL-EANQ--------------E---EHRQRIVDWIDGTG-----G-LASAFDFTTKGVLQ----------EAVS-------------------KSEYWR----LKDDQGRPPGV-I-GLWPARAVSFVENHDTGSTQN---------------------------HWPF-------P-KDEVLQG-YAYILTHPGVPTVFYDHYFEWGGE--------------------------------------------MKAALSRLIQIRRQQHITSQ--STVHILE-------------------------AA-S------------VYVAEVDD-------------------------------------CTL-MKLG-KEDWAPPD-------------------------NQ------KWC-WVHSGR--NYS---IWT------------------------------------------------------REKKPP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_GAQ80182.1_isoamylase_Klebsormidium_nitens" spec="Sequence" taxon="GAQ80182.1_isoamylase_Klebsormidium_nitens" totalcount="20" value="---MQ------------------------------------------------------------------------------------------------------------------------------------RQCTGRDTASARSKSSPAVHALKKDGNT------------------------------------------FVYHINGGGRVLASVRKE-ARRFMVTLEVNTK----------------------------------------------------------ELEIDSATPLHL------------HWGLSRSDSEDWVLLDAKSAPPNTT-LSGG-----------ETEAMRTPILESRPGVRRIEIALD---------------A-----------------------------------RKAP--VELHFVLYQPPTEKVPE-KW---------------------FRSTKESNFSV-----PVGLGRG----SPDPLGATWQSN----------------------------G-SVNFALY-SRNAEGVILCLF----KPGAVEP---------------------------------------------------------------------STELDLSPGLHRTGDVWH-AQLES-VE-------------GY-DR--YGY-RVRGAVGW-----AT----GNRF--HSRPVLLDPYAHF------------------------------I-APH----------V-----PGQE------------DLPS-------------------------------PALALG-LL----------QP-EEP-----FDW---EGD--YPP--LV--PMEELIAYKLHVGGFTRDASSGV-----ADAARGTFLGVVE-KVQHLVDMGVNAVILQPIAAFDETL---------------G--SFFPISFFAPASIYGPG----GSGVAASRSLKLLVKELHRAGIEVLLDVVYSHTAEGN--DEDPKTVSL-R---GIDN-----ATYYLVDEF--------GQF-KI---P--------EF-----GVG---NAFNCNHPTVQRMIVDSIRRWVEEFHVDGFCFANAGALVTG-------------------------------------------PHGQQLSRPLLVE-ALAFDPVLADIKLIADLRSPITG-VHQPVDFPHWS-RWAEWNS---RYRDDVRRFIRGEG-----GQ-LSSFATRLVGSGD----------IFDD-------------------RRGPGF----SFNHVTSPYG-----YTLADVVSYTGYPNDF-----------RCQNEFGWNAGV---EG--QVADP---GVTDARQRQMRTY-LVALFLSQGVPVLTMGDEYGHTKNGNLDVE---D-----------RNS--VFHWGQMEG--PL--GSQLKELIARLVAFREE----------------------HPELLQRREYLLPHELVWHGYWPAHPEWDNPSSAFLAASLHQYVPVEEPEPDSEYEPEPELEAPERAPFSVPGVSLEAP-SGAGEDL-PEAVDPLAGLEPVGHGDLYIAFNAHGDQVTLGLPAP-PRGAVWHRLADTSMPVQSY---FVG--------EG----------EALHAP--PPGAPDVVHPHGSYDLAPFSALLLEAKFPKGADGV-RR------------------------------------------------------------------------------------------------------------P------------S-------------YEMQT----------------------------------------------------------NKAAPFAVSLSGF----------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_GAQ89829.1_Malto-oligosyl_trehalose_hydrolase_Klebsormidium_nitens" spec="Sequence" taxon="GAQ89829.1_Malto-oligosyl_trehalose_hydrolase_Klebsormidium_nitens" totalcount="20" value="---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIPLGP------------------------------------------------------------------------------------------------------SWLGLLTKVEGSE-----------YDGKLVTVVP-------------------------------------------------------------K---AVA--TGVDVIDRTSAAALTDEQIL-DSTPGLG-----------------------------AILDAEGG----------------------------------------------CVFRVW-APEAQYAELVVL----G-----------PN-----------------------TP-DD-----------------------DNVLGMR---------------WEGGNF-AVRAPG-VR-------------AG-A-KYYFIFH------------HN--G--EKF--YR-R---DARAR------------------------------YT-DF---D--------------GCACYV-VDPS----YDWA---------------PFEA-----------------------------------------------------------P--TWDKLILYQVHVGAFTGRE-----------EGGGTFNALAA-KVDYIKSLGFNAIQLMPVTEFGG----------------LW--GYNPRLLTSTHQAF----GTP-------AELQSLVDTCHKAGIAVIFDVVLNHGAARL--NS-LW--AY-DGWNPNNG-----GGIYHHG----------AGK-------TP-------------W-G---KKFAFGRWEVDDYILEGAEIFLRDFNGDGLRFDSVHNMPWQL--------------------------------------------------------LQRMT------WTLHDKYPGKIL-ISEI--------------T---PEDSAAVS-----SAGFDATWIHSTFFET-R-KYMEGD---RA-------------------------------LGKVQHVLGLG---SGFSKPT--QMLKYVMGCHDQIGCRNNGAFCHD-----------IGGLHRYPVDHY-GGRNKWGARAIARMW-YAAMIAASGIPMAFMGTECHHDGWWHVEQNR--------------C-----FNWWFAG--DPL--GQEMMRLVTSANTLRTQSHALGA--GGFDTVHF----------------------DDHHKV-------------LGFRRESN---------------------------------DQTLLVIVNAG-GNQWENSDYGVG--------------------VGDRGIGR-RYVERFNSQDA----SFGGWEGSGNAGRDL------------HE--HG----------GRIYINVPKWSTLIFE-VL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_KAF2951986.1_hypothetical_protein_DAI22_01g302500_Oryza_sativa_Japonica_Group" spec="Sequence" taxon="KAF2951986.1_hypothetical_protein_DAI22_01g302500_Oryza_sativa_Japonica_Group" totalcount="20" value="---M----------------------------------------------------------------------------A---VAS-------------------------------WSIPAIPRAGPT---ARGVLLGGAFVTAARPPVAWRCRATLP----------------------------------------RRVRLGGVVARAGAAETPVAGSGEAGLLFSEKFPLRRSRTVE--GKAWVRVDAEPDGEGKCKVVIGCDVEGKWVLHWGVSYDGEQGREWDQPPSDMRPPGSVPIKDYA--IETSLDTPHNSEGKTIHE----------VQIKIDKGTSIAAI-----------NFVLKEEET------------GAWFQHKGQDFRIPLSG--------------------------------SF---GGD--LLGTEQDIDVRPGALGHLSNVLQKPEGPIAE-PHKT--------------VP---------------------------------DDKGSRTKHIS-------------GFYEEYPILKTVYVQNFITVN----V----REN---NGTTKHAVEFDTDIPGEVIIHWGVCKDNTMTWEIPPEPHPPATKIFRQKALQ--TMLQQKA---------------DGTGNSL-SFLLD-GE-------------YSGLI--FVV-KLDEY--TWLRN---------------------VENGFDFYIPLTRADAEADKQKADDKSSQDDGLISDIRN-LVVGLSSRRGQ-----RAKNKVL-QEDILQEIERLA-------------------------------AEAYSI-FRSPTIDTVEESV------------Y---IDDS--SI--VKPACSGTGSGFEILCQGFNWES----------HKSGKWYVELGS-KAKELSSMGFTIVWSPPPTDSVS----------------PE--GYMPRDLYNLNSRY----GTM-------EELKEAVKRFHEAGMKVLGDAVLNHRCAQFQNQNGVW-NIF-G---------G-RLNWDDRAVVADDPHFQGRGNKSSG--D--------NF-----HAA---PNIDHSQEFVRSDLKEWLCWMRKEVGYDGWRLDFVRGFWGGY-V-H-------------------DYLE-ASE-PYFA----VGEYW-----D--SL-S-------------YT---YGEM-DYNQ--------------D---AHRQRIVDWINATN-----G-TAGAFDVTTKGILH----------SALE-------------------RSEYWR----LSDEKGKPPGV-L-GWWPSRAVTFIENHDTGSTQG---------------------------HWRF-------P-FGMELQG-YVYILTHPGTPAIFYDHIFSH-----------------------------------------------LQPEIAKLISIRNRQKIHCR--SK---------------------------------------------------------------------------------------------------------------------------------------------------------------VWE------------------------------------------------------VSS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_KAH7288477.1_hypothetical_protein_KP509_31G027800_Ceratopteris_richardii" spec="Sequence" taxon="KAH7288477.1_hypothetical_protein_KP509_31G027800_Ceratopteris_richardii" totalcount="20" value="---MEL---H---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FVSY----------------------------------------------------------PGAYRNNTACLG------------LPPFGSH--LVPSPKACLQQQEVMR----------------------------------RCKRRV---------------S-----------------------------------VCRS--SY---------VDVSVSEN------------------------EVKAADDTL-----FGAPSHG----SPLPFGATMVGD------------------------------GVNFSIH-SSSATSVTLCLF----TSSDLQQ------------------------------------------------------------------GQVTREIPLDPRLNRTGDVWH-ICLPN-IS-------------EE-LL--YGY-RMDGPFFP-----ES----GQRF--NPACILVDPYAKA------------------------------V-ISREVYG------V-----PASN------------GNCW-------------------------------PQMGGM-VP----------FN-AEP-----FDW---EGD--ISP--RL--SQKDLIVYEMHVRGFTRHESSNV-------NYPGTYHGLVE-KLDHLKELGINAIELMPCNEYNELESYAYNAVMGGYKMNFW--GYSTLNFFSPMIRYSKS-GNSRCGLDAINEFKTLVREAHKRGIEVLMDVVFNHTGEGN--EMGP-TLSF-R---GVDN-----AVFYMLAPK----------G-EFY--N--------YS-----GCG---NTFNCNHPIVRRFIVECLRYWVIEMHIDGFRFDLATILTRSSSLWD-----------------KANVFGHTEGLEGDL-----LTTGSPLAEPPLID-MISNDPVLCDVKLIAEPW-DCGG-LSQVGKFPHWG-LWSEWNG---KFRDTVRQFIKGTD-----GV-VGDFANCLCGSPQ----------IYQD------------------GGRKPWH----SVNFTTAHDG-----FSLADLVSYNKKHNTANGEGN----RDGEDHNNSWNCGE---EG--ELVSL---HVHDLRQRQMRNL-LLALFVSQGIPMMTMGDEYAHTKGGNNNTYCHDN-----------YIN--YFRWDKKET--D---INGFYRFSRLLLNFRRE-----------------------CDSLGMEDFLTSDRLSWHGECPNMPDWS-ETSRFVAFTLIDS----------------------------------------------------------RYKELYVAFNASHLAKIVSLPLR-Q-GHKWQPLIDTSKCSPYD---FLA--------MD----------ILDKDV--AVAQYAHFLKSNIYPMSDYSSIVLHLVP----------------------------------------------------------------------------------------------------------------------Q----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_KAH7425702.1_hypothetical_protein_KP509_11G067000_Ceratopteris_richardii" spec="Sequence" taxon="KAH7425702.1_hypothetical_protein_KP509_11G067000_Ceratopteris_richardii" totalcount="20" value="---------------------------------------------------------------------------------------------------------------MQ-----RSLFKGNRCEGN---RASKTAAVEEGGKNVEEALNELVKEAD----------------------------------------EGLSDQKTDTDDVVALREALAAAHDRIASAENEKADALKALA--QAEAKVQEYADIVVKGTESALQEMQAAKESFHMELQHILEQKLAVESELVLAKQDALELAVSVD--K----------VADYVIKETTAHIAEDAMLKMAAAKTAAAEA-----------ALTVEERIKDATLEAANSMIEETRDAIEKSFAALEAAK--------------------------------DK---AQK--SEIALFQKMQILDDMVLKEASALGLQQAVSN-LQRQLQAAENEIQRLETEVKATLARAEAAEARA----AAADESLKQ-FQEKACQSAQEHEESAR-------------KALEALK-NAGAARLEAARSA----F----KSD---IEALQTALNTVHK----------AEKSQEKAYA---------------------RRYQALE---------------RALAASE-ALSIT-WK-------------ERALA--VEK-LLQRF--RTEGSDAA--G--GNG--GI-E---GVLTGGRMKALLGNDSRKWDLLANGPRRDTPEWMERRIEV-ALQGLPPRKHGQV--QQEADEKF-LLPGIEDVWCIATAK---------VK-----------------EDVYTQ-HAAEKEAIDEQRRVLEKTLS-----K---RSAR--RP--LKASESGTGSGYEIVLQGFNWES----------WR-KKWYLELGP-KAADISSCGITTIWFPPPTESVS----------------PQ--GYMPGDLYNLNSAY----GTE-------DELKNCVEEMHNHDLLVLGDVVLNHRCAQRKGPTGVW-NVF-G---------G-KLAWGPEAIVRDDPNFHGRGNPSSG--D--------FF-----HAA---PNIDHSQDFVRKDIVGWMKWLRTEIGFDGWRLDFVRGFWGGY-V-K-------------------EYIE-ATA-PVFA----IGEYW-----D--SL-A-------------YE---GGNV-CYNQ--------------D---AHRQRIVNWVNATG-----G-TSSAFDVTTKGILH----------AALH--------------------NEYWR----LIDPQGKPPGV-M-GWWPSRAVTFLENHDTGSTQG---------------------------HWPF-------P-RDKLMQG-YAYILTHPGTPVIFYDHFYDFG----------------------------------------------LRDAITELIAVRRRTGVHCR--STVKIYH-------------------------ATNQ------------GYVAQIGE-------------------------------------NLV-MKLG-HLDWNPSK-------------------------QNNL-EG-NWQRCLDSGA--DYQ---IWE------------------------------------------------------RN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_NP_001324597.1_isoamylase_1_Arabidopsis_thaliana" spec="Sequence" taxon="NP_001324597.1_isoamylase_1_Arabidopsis_thaliana" totalcount="20" value="---MDA---I---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KCSS------------------------------------------------------------SFLHHTKLN--------------------------TLFSNHTFPKISAPNFK-----------P------------------LFRPI---------------S-----------------------------------ISAK--D-----------RRSNEAEN---------------------IAVVEKPLKSD-----RFFISDG----LPSPFGPTVRDD------------------------------GVNFSVY-STNSVSATICLI----SLSDLRQ------------------------------------------------------------------NKVTEEIQLDPSRNRTGHVWH-VFLRG-DF-------------KD-ML--YGY-RFDGKFSP-----EE----GHYY--DSSNILLDPYAKA------------------------------I-ISRDEFG------V-----LGPD------------DNCW-------------------------------PQMACM-VP----------TR-EEE-----FDW---EGD--MHL--KL--PQKDLVIYEMHVRGFTRHESSKI-------EFPGTYQGVAE-KLDHLKELGINCIELMPCHEFNELEYYSYNTILGDHRVNFW--GYSTIGFFSPMIRYASA-SSNNFAGRAINEFKILVKEAHKRGIEVIMDVVLNHTAEGN--EKGP-IFSF-R---GVDN-----SVYYMLAPK----------G-EFY--N--------YS-----GCG---NTFNCNHPVVRQFILDCLRYWVTEMHVDGFRFDLGSIMSRSSSLWD-----------------AANVYGA--DVEGDL-----LTTGTPISCPPVID-MISNDPILRGVKLIAEAW-DAGG-LYQVGMFPHWG-IWSEWNG---KFRDVVRQFIKGTD-----GF-SGAFAECLCGSPN----------LYQ-------------------GGRKPWH----SINFICAHDG-----FTLADLVTYNNKNNLANGEEN----NDGENHNYSWNCGE---EG--DFASI---SVKRLRKRQMRNF-FVSLMVSQGVPMIYMGDEYGHTKGGNNNTYCHDN-----------YMN--YFRWDKKEE--A---HSDFFRFCRILIKFREY-VIF-FHESID-LNCLVDRF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_XP_002967402.2_1_4-alpha-glucan-branching_enzyme_chloroplastic/amyloplastic_isoform_X2_Selaginella_moellendorffii" spec="Sequence" taxon="XP_002967402.2_1_4-alpha-glucan-branching_enzyme_chloroplastic/amyloplastic_isoform_X2_Selaginella_moellendorffii" totalcount="20" value="-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MADPRW-----------------------------------------------NFHRSVI-----------------------------------KAVKTEEHVAR--EDLPVVRVDPLLAPHQDHLK---------------------YRFSQYEGRKK-----AIEKYEG----GLEKFSLGFQ-KFGF---------------------NYEDG-YIVYREW-APPAQAAQLIGD---------------FNN-----------------------WD-G------------------------WSHPMEK---------------DKYGVWS-VRIPD-VDGK-----------PG-IP--HGS-RVKFR--M-----QR--G--DGQWIDR-I---PAWIK------------------------------YATVE-------------------------------------AGKM-----GA-SYD------------------GI-L-W----------NPPEDQR-----YKF---E----HPR--PP--KPVVPRIYEAHVGMSSKEP------------CVASYIDFADNVLPRIKSNNYNTVQLMAVMEHSYYA--------------SF--GYHVTNFFGVSSRS----GTP-------EELKYLIDRAHSLGLRVLMDVVHSHASNNI--KDGLN--GF-DL-GQQTQ-----ESYFHTGDR--------GYH-------KL-------------WDS---RLFNYNNWEVERFLLSNLRWWLEEYQFDGFRFDGVTSMLYHHHGIH------------------MSFSG-RY-----R-----DYFSEASDVDAAVY-LMLAN------ELVHTLYPDATT-IAED--------------V---SGMPTLGRPVSEGGVGFD-YRLAMGIPDTWI-KLLK---------EVA---------------------DEHWS----MAEIAST---L-LNRRYTEKAIAYAESHDQSLVGDKT--LAFM-----LMDKEM---YAGMSALQEQSIIIERGIALHKMIH-FLTMALGGDGYLNFMGNEFGHPEWIDFPRE-----------GNKWSYDKCRRQWDLVDT--DHLRYKFMNEFDKAMNALEEKYHFLTL--PL-IVSST----------------------HDKDKV-------------IVFERGD-------------------------------------LVFVFNFH--PETTYEGYKI----------------------GCDL-PG-KYKIALDSDAF----DFGGRVRVGHDVDHFTSPEGIPGRPETNFNNRP----------SSFLVLSPARTCQVYF-KVPK------------------------------------------------DAVQSEEENEDVSQPAASVL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLISQSAAQKELPFNFMDDIPDFSQ---D"/>
+                            
+        <sequence id="seq_XP_002988323.2_uncharacterized_protein_LOC9662716_Selaginella_moellendorffii" spec="Sequence" taxon="XP_002988323.2_uncharacterized_protein_LOC9662716_Selaginella_moellendorffii" totalcount="20" value="---M-----------------------------------------------------------------------------------------------------------AS-----AAVIRPHSCSTF---IPGN-------------------------------------------------------------------------------RQGVRATG--IQKRLSYT-HFVNAAL--QRDSPVVEDSKRKTVTKQMSASTSDWSNESLKSELGNVLQEKIA-----ALEKQNVKDINKKAQ--K----------IAEFVLEEISRRSAK---RKDVVEKTSVADA-----------NLTVEKTVKDAASDAAVSVATELEAVADEARKALETAK--------------------------------EC---AQR--AEETLAQKLLLLEKVPKPELLLSTLEESVAS-LEKQLEIAKDDLSRLQFAADAAKSQAKVAEARA----AKADVTIQE-LRQKVGDAAQERASMFN-------------ETVESLR-ATASAREESLKVA----F----EAQ---LAALQAAMEASEK----------AKKIKEQANL---------------------RRFQAFE---------------NALAASE-ASLLA-WK-------------ERALN--SEG-LLQR----------------SDA--EW-S---VVFSDGRMTALLGGD-KIAELVEGGPRREIPDWMKKRIQA-AMQGIPPRHQTTVSADTETSKPL-ELPSLEEVWSVAKAK---------VKQ----------------DDLFSK-DVVAKETLDKQRRDLEQALGQTTITK---RKGR--VI--KEKPESGTGSGREIVFQGFNWES----------CR-KRWYQDLAP-KAADLSQSGITTVWFPPPTESVA----------------PQ--GYMPVDLYNLNSAY----GSM-------DELKHCIQEMHKHDLLVLGDVVLNHRCAYKQNSNGVW-NIF-G---------G-KLSWGPEAIVNDDPNFQGRGNPSSG--D--------IF-----HAA---PNIDHSQAFVRKDIKEYLDWLKTEIGYDGWRLDFVRGFWGGY-V-K-------------------EYIE-ASE-PAFA----IGEYW-----D--SL-L-------------YE---GGNV-AYNQ--------------D---AHRQRIIDWINATG-----G-TSSAFDVTTKGILH----------AALH--------------------NEYWR----LIDPRQKPPGV-M-GWWPSRAVTFLENHDTGSTQG---------------------------HWPF-------P-RDKLLQG-YAYILTHPGTPVIFYDHFYDFG----------------------------------------------LRDPIVDLIAARNRTGINCR--SPVKIFH-------------------------ANND------------GYVAKVGE-------------------------------------QLV-VKLG-RFDWNPSK-------------------------QNDL-IG-NWKRSVGQGS--DYQ---VWE------------------------------------------------------EE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_XP_015644348.1_1_4-alpha-glucan-branching_enzyme_3_chloroplastic/amyloplastic_isoform_X1_Oryza_sativa_Japonica_Group" spec="Sequence" taxon="XP_015644348.1_1_4-alpha-glucan-branching_enzyme_3_chloroplastic/amyloplastic_isoform_X1_Oryza_sativa_Japonica_Group" totalcount="20" value="---MDS---CA--------------------LFL-------------------------------------------------------------------------------STPRP-----PPPLVPAHRRRPLASRSGLRRREGCPCSCASSSSSSG----------------------------------------RAGSQDRPPRPWQQKQRTQRPGRGEAIDPVGFLAKHGIS----------------------------------------------------------DRAFAQFLRDR--Y----------KALKDRRWELHSRLIDLKEASSGFELMGMHR-----------HRQHRVDFMEWAPGARYCSVVGDFNQWSTTENCAREGHLGHDDFGYWTIILEDKLREGQEPDEYYFQEYNYADDYDKGDNGVDVEELIHRMNEEYWEPGE--------------------------------------IKSQKS----RLEVVAKLYE-QMFGP----------NGPQTEEELGDIPDA-ETRYNEW-KALQKDDSASSLPCYDI----IDNGQEFDI-----------------------FN-V------------------------ATDRVSF---------------EKFQGKS-PPLAYWVEMRKGRKAWLEKYVPA-IS--HKD-KYRVY--F-----NT--P--DGG-LER-I---PAWATYVLPG-------------------SPNLSFFCVDA-------------------------------------EGK---------QSY------------------AV-H-W----------DPPPEEI-----YKW---R----FER--PK--VKGSLRIYECHVGISGSEQ------------KISSFQEFTSNVLPHIKDAGYNAIQLIGIVEHKDYS--------------SV--GYKVTNYFSVSSRF----GSP-------DDFKKLVDEAHGLGLVVLLDIVHSYASADE--LVGLS--LF-DG----SN-----DCYFHSGKR--------GHH-------KY-------------WGT---RMFKYDDIDVLHFLLSNLNWWVTEYRVDGFQFHSLPSMLYTHNGFS-------------------TFTG-AT-----E-----EYYNQYVDEDALIY-LIIAN------EMLHELHPDIIT-IAED--------------A---TFYPGLCEPTTQGGLGFD-YWVNLSIPEMWL-WHLE---------NVP---------------------EQEWS----MNKIMRV---L-VNNNS--NMLSYVENHNQSISGRKS--FAEI-----ILYEGK---CSNSSVDND---LIFRASSLLNIIK-LITFTTSGGAYLNFIGNEFAHPKRIEFPMS-----------SNDYSFCLANRQWELLDK--GV--HKHIFNFDKDIMSLDGKERLISG--GSPIVHHC----------------------DDTSMI-------------IYFTRGP-------------------------------------FLFVFNFN--PDASYQLYSV----------------------GVDE-AG-EYQLILNTDET----KYGGRGELTSNQYMKRT-------SDNRVGGCR----------NSLELTLPSRSAQVFK-LVRILRI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_XP_015649620.1_alpha-amylase_3_chloroplastic_Oryza_sativa_Japonica_Group" spec="Sequence" taxon="XP_015649620.1_alpha-amylase_3_chloroplastic_Oryza_sativa_Japonica_Group" totalcount="20" value="---M----------------------------------------------------------------------------A---VAS-------------------------------WSIPAIPRAGPT---ARGVLLGGAFVTAARPPVAWRCRATLP----------------------------------------RRVRLGGVVARAGAAETPVAGSGEAGLLFSEKFPLRRSRTVE--GKAWVRVDAEPDGEGKCKVVIGCDVEGKWVLHWGVSYDGEQGREWDQPPSDMRPPGSVPIKDYA--IETSLDTPHNSEGKTIHE----------VQIKIDKGTSIAAI-----------NFVLKEEET------------GAWFQHKGQDFRIPLSG--------------------------------SF---GGD--LLGTEQDIDVRPGALGHLSNVLQKPEGPIAE-PHKT--------------VP---------------------------------DDKGSRTKHIS-------------GFYEEYPILKTVYVQNFITVN----V----REN---NGTTKHAVEFDTDIPGEVIIHWGVCKDNTMTWEIPPEPHPPATKIFRQKALQ--TMLQQKA---------------DGTGNSL-SFLLD-GE-------------YSGLI--FVV-KLDEY--TWLRN---------------------VENGFDFYIPLTRADAEADKQKADDKSSQDDGLISDIRN-LVVGLSSRRGQ-----RAKNKVL-QEDILQEIERLA-------------------------------AEAYSI-FRSPTIDTVEESV------------Y---IDDS--SI--VKPACSGTGSGFEILCQGFNWES----------HKSGKWYVELGS-KAKELSSMGFTIVWSPPPTDSVS----------------PE--GYMPRDLYNLNSRY----GTM-------EELKEAVKRFHEAGMKVLGDAVLNHRCAQFQNQNGVW-NIF-G---------G-RLNWDDRAVVADDPHFQGRGNKSSG--D--------NF-----HAA---PNIDHSQEFVRSDLKEWLCWMRKEVGYDGWRLDFVRGFWGGY-V-H-------------------DYLE-ASE-PYFA----VGEYW-----D--SL-S-------------YT---YGEM-DYNQ--------------D---AHRQRIVDWINATN-----G-TAGAFDVTTKGILH----------SALE-------------------RSEYWR----LSDEKGKPPGV-L-GWWPSRAVTFIENHDTGSTQG---------------------------HWRF-------P-FGMELQG-YVYILTHPGTPAIFYDHIFSH-----------------------------------------------LQPEIAKLISIRNRQKIHCR--SKIKILK-------------------------AEGN------------LYAAEIDE-------------------------------------RVT-MKIGA-GHFEPSG-------------------------PT------NWVV-AAEGQ--DYK---VWE------------------------------------------------------VSS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_XP_024394371.1_isoamylase_1_chloroplastic-like_Physcomitrium_patens" spec="Sequence" taxon="XP_024394371.1_isoamylase_1_chloroplastic-like_Physcomitrium_patens" totalcount="20" value="---MAM---A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAMG----------------------------------------------------------VGGHRSSSAGAV------------FTSQVCSRGAGVGTKVAVRVDHVVKAIKADDGSGNGKEKNTL--------GWKSTH---LSARPL---------------T-----------------------------------ICRV--AG---------VSSDSANTE---------------------TESKEEAGHRL-----CGPPLRG----RPLPFGATACEE------------------------------GVNFAVH-SSGATAVALCLF----TESDLQQ------------------------------------------------------------------GVVTKEVPLHPVFNRTGDVWH-IFLPD-LQ-------------SN-LL--YGY-RVDGRYIL-----EE----GACY--DARRILVDPYAKA------------------------------V-ISRERYG------T-----LGEG------------GDCW-------------------------------PQMAGM-IP----------DL-HDE-----FDW---DGD--FPP--RI--PQKDLVIYEMHVRGFTKHASSEV-------EHPGTYIGMIE-KLAYLKALGINAIELMPSHEFNELEYHAYNPMMSDYKMNFW--GYSTINFFSPMIRYASA-GNKNCGKEAIKEFKSLVREAHKLGMEVLMDVVFNHTAEGN--EMGP-TISF-R---GFDN-----HVYYMIAPK----------G-EFY--N--------YS-----GCG---NTFNCNHPVVRRFIIDCLRYWVTEMHVDGFRFDLASIMTRASSLWD-----------------KVNVFGRSDELVNDT-----VTTGTPLNEPPLID-MISNDPVLRGVKLIAEAW-DCGG-LYQVGSFPHWG-VWSEWNG---QFRDMVRLFIKGTE-----GT-AGIFAQCLCGSPH----------LYQE------------------GGRKPWH----SINFITAHDG-----FTLADLVSYNQKHNVANGEDN----NDGDNHNNSWNCGE---EG--EVVSI---PVQRLRQRQLRNF-FVALMVSQGVPMITMGDEYGHTKGGNNNTYCHDN-----------FIN--YFRWDMKRA--D---PNGFHRFASLMMNFRSG-----------------------TECLRLGDFLTGDRLEWHGIFPNTPDWT-ESSKFVAFTLVDQ----------------------------------------------------------QKRELYIAFNASHLPVMVTLPDR-V-GAKWYPLVDTSKPTPYD---FLV--------DD----------VPNIDV--VLAQTSNFLNSNLYPMISYSSIVLVLKDEDA-------------------------------------------------------------------------------------------------------------------F----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_XP_024531535.1_isoamylase_1_chloroplastic_Selaginella_moellendorffii" spec="Sequence" taxon="XP_024531535.1_isoamylase_1_chloroplastic_Selaginella_moellendorffii" totalcount="20" value="---MAM---A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PAIV----------------------------------------------------------SGAIPSASP---------------DAPRVCHRGDAAAASCSDRAPPHCVNLARG--------WHCR--------GKISWWRHCNGGDPV---------------V-----------------------------------SCRA--ME---------TST-SSYSS-----------------------SESVDVKKL-----AGSPKRG----RPLPFGATPVEG------------------------------GVNFSVH-SSGAIAVSLCLF----TEEDLQK------------------------------------------------------------------GRVSKEFPLHPVFNRTGDVWH-VYLPD-VC-------------PN-LL--YGY-RLNGKFSL-----EE----GCCY--DLSRILVDPYAKA------------------------------V-VSRGKYG------A-----LGPG------------NSCW-------------------------------PQMAGM-VP----------QL-NDE-----FDW---QGD--SPP--RH--KQKDLIIYELHMRGFTQHPSSNV-------DFPGTYLGALE-KLPHLKDLGINAIELMPIHEFNELEYYSYNPVMGDHKMNYW--GYSTINFFSPMTRYASS-GIQNCGRDAIKEFKTFVREAHKLGIEVFMDVVFNHTAEGN--EMGP-IISF-R---GLDN-----RVYYMTAPK----------G-EFY--N--------YS-----GCG---NTFNCNHPVVRRFIVDCLRYWVLEMHIDGFRFDLASILTRASSLWD-----------------KANVFGTSEDVDGDS-----VTTGTPLSEPPLID-MISNDPVLRGVKLIAEAW-DSGG-LYQVGNFPHWG-IWSEWNG---QYRDTVRLFIKGTD-----GL-AGAFAQCLCGSPH----------LYQD------------------GGRKPWH----SVNFVTAHDG-----FTLLDLVSYNSKHNIANGESN----NDGETHNNSWNCGE---EG--ELVSI---RVRRLRHRQLRNF-LVALMVSQGVPMVTMGDEYAHTKGGNNNTYCHDN-----------AIN--YFRWDKLRT--D---PTGLFRFSRHLFNFRRQ-----------------------SESLGLGDFPTAERLEWHGVVPETPDWS-ETSRFVAFSLVDA----------------------------------------------------------KKRELYIAFNTSHLPVLVTLPER-P-GFKWQPVVDSSKPAPYD---FLA--------DD----------IPDLAT--AYAQYSPLLNAQIYPMISYSSVILVLVPLNE-------------------------------------------------------------------------------------------------------------------D----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                        
+    </data>
+
+    <data
+id="g41182_select"
+spec="Alignment"
+dataType="aminoacid"
+name="alignment">
+                            
+        <sequence id="seq_CBr_g41182_beta-amylase_3" spec="Sequence" taxon="CBr_g41182_beta-amylase_3" totalcount="20" value="------MSAAVSTVSNKWVSLNS---SKNRTSS----------RVKGGGGGGHCQRSPVVVVAAAPGTKS--GSRSRSPL-STSSSAAAARADLATGR---------------------------------------------------------------------------------------------------------------RRKSFLQTSSSSSSSSSPSSPSS------PSSSSFAHSRSHPELYVSFLAVRPSGGPVQARISSSSSRCIVAIDRRPFEAVSPTALSSIARTETLPCGFSRSCSLFPPPSSSSFFACSFASSSSSSSSSSSSSSRACASCSSSCPSSSSSSSSCPSTSSTERWELTSRAENPSSGGPHESEGPGCCASETSTESSLSSEFGVTLTHLPGAGPLSLTQLSGRKITTGWSHLAAVIRREKLKKSLKEAEDELSDIELCLRRAGLTSDQRKKVATVVGSRRDSSSSRELARAS--PPHPHPHPHPAASAGK-----------A------VAHSLAISDA--G-RFIGERGQTGGNSASIGPTWCRSGLCPAASAPPSLIQEHRQGRDSRWNGGAPKGACGVEEKVAERQKKKEEEEEREEREKREEREEKGDHQPAQHRWSCPAQSQLKEPGAL-----------LQLAVEGGVGAVNMVEGGDGPFRSTTGPTGRRPSMGNETSTTQSTMLDTPTSFYTLGHDGHHGWPTDSRDRGLE-N--QR--------------------------------------EDGRDR-G------T-AENES-EDGESASEVPVYVMLPLNTVSEQG--------LS---NPKMLETALKALK-NVGVRGVMVDVWWGVVERDEPRRYDWTPYRQLFVILRRLGLKLQAVMSFHSCGSNVGDDYKQPLPRWVLQIGDVDEDIYFADVHG-----NKNAECVSLFADEE-PVLHGRTPIQCYQDFMRSFRQELGEFIG-SVVVEVSVGMGPCGELRYPSYPEG--RWKFPGIGEF-------QCYDKRAAAHLRSAATARGHPEWGHCGPHD-SGTYNCFPHETGFFRDHG-GNWDTEYGRFFLEWYSGALLQHGERMLRAACRAFF-DV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DLSGMGYCSVARRSGPHTGNGRGGELQS-----------------------------------------------PWRSRT-DGQVKLSVKCAGVHWWYNTASHAAELTAGYYNTRK-----KRGYDDIVYMCWMY-GAELNFTCIEMRDSEQ---PGSAYCSPEGLLKQVRLAAARRRVPLTGENALSRYDDEAF-----RQMLTQSFEVVVDEDSSSERGQ--PKKRHLLPPLAGLTYLRLTPLLLDDVQFTRFKNFVESMR-R-RSRDTNR-VV--DASRR----AGQQP-----VCHRRG-----------------------------TS------------VGGG--AGGGGGPAAVVVVV-G----GEAAGGGGGAAGSPSSTSGSNNNGSPRHL--------------------------------D----------LD--------------------------------------------------------------LDLDFDF------------------------DFDFD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-----------------------------------------D"/>
+                            
+        <sequence id="seq_EFJ18922.1_hypothetical_protein_SELMODRAFT_419538_Selaginella_moellendorffii" spec="Sequence" taxon="EFJ18922.1_hypothetical_protein_SELMODRAFT_419538_Selaginella_moellendorffii" totalcount="20" value="---------------------------------------------------------------MDARFLC--CPVALLPR-CHPKLAPAARSNHFVQA---------------------------------------------------------------------------------------------------------------ITGRKVSNLASHKMVSRSSTSS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--A-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVEEMTKE----------EEKEE-RDFAGTPYVPIYVM-------LPLGLISES-NEL--VNPEGIRRDLQALK-SVNVDGVMVDCWWGLVE-DTPQKYNWSAYRELFTIVKESDLKLQVVMSFHQCGGNVGDDVNIPIPKWVLEIGKENPDIFFTDKHG-----HRNPECLTWGVDKE-RVLKSRTGLEVYFDYMRSFRQEFDDLFQSGVIAEIEVGLGACGELRYPSY-----------------------CYDKYLIKSLKQAAEARGHTEWGC-CPDN-AGEYNSKPQETDFFRD-G-GDYDSYYGRFFLKWYSKVLIEHGDRVLMLAKLAFE-GF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HIASKVSGIHWWYKTASHAAELAAGFYNPCN-----RDGYVEIAEMFAKH-DASLNFTCVELRTLAQEEDFPEALADPEGLVWQVLNAAWDAGIYVASENALPCYDRDGY-----NKILENAKPSKN------------P----DGRHISAFTYLRLSPVLMEEHNLHEFARGRRLRTLK-QA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K"/>
+                            
+        <sequence id="seq_EFJ25140.1_hypothetical_protein_SELMODRAFT_149606_partial_Selaginella_moellendorffii" spec="Sequence" taxon="EFJ25140.1_hypothetical_protein_SELMODRAFT_149606_partial_Selaginella_moellendorffii" totalcount="20" value="--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M-------LPLDSINSGNNQV--NRARAMNASFQALK-SAGVEGVMVDVWWGIVEKDGPCNYNWSGYRELLEMAKKHGLKVQAVMSFHQCGGNVGDSAFIPLPWWIVEEAKNNPDMVYTDRYG-----NRNFEYLSLGCDHL-PVLKGRTPVQAYSDFMRSFKESFSDMLGD-VIVEIQVGMGPAGELRYPGYPERDGIWKFPGVGEF-------QCHDNYMLASLKASAEAIGKPDWGC-APSD-AGHYNQWPEDSIFFKR-D-GGWNTDYGRFFLEWYSGKLIEHGESVLTAAEGIFR-GS-P----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRLSAKVAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPLARMFGRH-GVTFNFTCFEMRDVEQ---PAAAQCSPEGLLKQVVAAAKSAGVPLAGENALPRYDEGAY-----HQIVMKSRLEVEGEES----------MERAYEPMCCFTFLRMNERLFHPENWRRFVQFVKEIG-D-G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_GAQ79600.1_beta-amylase_Klebsormidium_nitens" spec="Sequence" taxon="GAQ79600.1_beta-amylase_Klebsormidium_nitens" totalcount="20" value="------------------------------------------------------------MSSGTPP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PYRIRAKSRG----VYHEEKLSNNTIH--F-S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLPG-S------G-PQVLS-REPLVQNHVPIYVM-------LPLDTVTIV-NTL--NHVKALNAGLRALK-SIGVAGVMVDVWWGIVEADGPRQYDWSAYMALIKMVHSMGLKVQAVMSFHACGGNVGDSCLVSLPYWVLQEAEKNPEVLYTDQNG-----NRNGEYLSLGVDCLP-LFEGRSPVQIYHDFMESFRDTFHQYLGD-CIVEVAVGMGPAGELRYPSYPEGDGRWRFPGIGEF-------QCYDKYMMANLRACAAAVGRPEWGLRGPHN-SGNYNNWPDETGFFNQ-HSGAYMNEYGDFFLSWYAENLAAHGDRVLGAAAAVFQ-GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GVVLAGKLAGVHWWNRHPSHAAELTAGYYSCRGKNLVRKEGYERIVRVFAKH-EAVLNFTCVEMADNEQ---PPEAMCSPERLLLKVRQTAARYGVPVSGENALPRYDLSAH-----RMIKHNVHRKDM----------------RNLPRMVAFTFLRMGESLFQTDHWRLFVEFVRNMDK--RE-LLEDPKK---P--R-K-EGQHGVPHSVDVRK----------------------------------------------------NTQVL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QMQ---L"/>
+                            
+        <sequence id="seq_KAH7283555.1_hypothetical_protein_KP509_34G013300_Ceratopteris_richardii" spec="Sequence" taxon="KAH7283555.1_hypothetical_protein_KP509_34G013300_Ceratopteris_richardii" totalcount="20" value="------MMVCVR-LPEA---------------------------------------------AEMVR-FWLPGATARAKF---LRSSM----------------------------------------------WRICLAFCWTSKQQRQSNHARIISRRSQLPFHQ----------KK----------KKHGARHF------CRR-GFSVRGLVEA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TK--RQPR--SIVDV---------------CLP---------C-----------------------------------------------------------------------------------------------------SPSLFEDGD------------------------------------------------------------------------------------------------------------------------------------LFLQQKV-H-------RDSRSVIRRGPEAG-VPVYVM-------LPLDSINPHNNTI--NRRRAMDASLLALK-SAGVEGVMLDVWWGR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_KAJ0630873.1_putative_beta-amylase_Helianthus_annuus" spec="Sequence" taxon="KAJ0630873.1_putative_beta-amylase_Helianthus_annuus" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALTLRSSTS-FISSKDIKT-LK------------------------SL-E-DFP-GTVCFAHIKPT------PR--RLRAKNSLQDAHITREK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ITSPFEGMFDEQ------------------------------------------------------------------------------------------------------------------------------KEKFHALS-S------------S-HHTKNDSRVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-SAGVEGVMVDVWWGLVEKDGPMKYNWEGYVELVNMVQKHGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISGNPDVVYTDRSG-----RRNPEYISLGCDSL-PVLRGRTPIQVYSDYMRSFQQKFKNYLGN-VIVEIQVGLGPCGELRYPSYPESNGTWRFPGIGEF-------QCYDKYMKASLEAAAEATGQKDWGKSGPHD-SGHYNQFPEDTGFFKR-D-GTWDTEYGRFFMQWYSGKLVQHGDRILNSANAIFT-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKLSAKVAGIHWHYKTRSHAAELTAGYYNTRN-----SDGYLPIARMLAKH-DAVLNFTCMEMRDHEQ---PQHAECSPEGLVRQVKMAVQAAGVELAGENALERYDGAAY-----KQVQETSR-------------------SDSGNGLCAFTFLRMNKRLFEAENWRELVNFVRSMS--EGGRV-RL-PE--R-----TDL----Y----VRFVDDK-----------------------------KM------------KGSL--KGDKE-----VV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L--V---"/>
+                            
+        <sequence id="seq_NP_001352477.1_Beta-amylase_3_chloroplastic_Zea_mays" spec="Sequence" taxon="NP_001352477.1_Beta-amylase_3_chloroplastic_Zea_mays" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALTLRSSTS-FLSHVDPAS-KL-----------------------LHKPTDEAP--PCCVS-VPPA------PSR-RPRALRAAAATATAPSP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATHRAPAEA------------------------------------------------------------------------------------------------------------------------------AELLHGGG-A------G-----Q-QHGLPRGGVPVYVM-------LPLDTVGPG-GQL--SRQRAVAASLMALR-GAGVEGVMVDVWWGVVEREGPGRYDWEAYAELVRMVERAGLRLQAVMSFHQCGGNVGDTCNIPLPPWVLEEMSSNPNIVYTDRSG-----RRNPEYISLGCDTL-PVLRGRTPIQVYTDYMRSFRQRFRDYLGN-VIAEIQVGMGPCGELRYPSYPEANGTWRFPGIGEF-------QCYDKYMRASLEAAAVASGHEEWGRGGPHD-AGEYKQMPDDTGFFRR-E-GTWSTEYGHFFLEWYSGMLLEHGDRVMDAAEAVFG-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATLSAKVAGIHWHYRTRSHAAELTAGYYNTRG-----RDGYAPIARMLAKR-GAVLNFTCMEMKDEQQ---PQHASCSPELLVQQVKAATSAAGVQLAGENALERYDDAAF-----SQVVSTAR----------------------GAGLAAFTYLRMNKTLFDGDNWGRFVSFVRAMA--DGGARPAL-PR--C---D-T-GHSDLY----VGFVDAA-------------------------------------------KERKAAEAKGA--AT-TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--L---"/>
+                            
+        <sequence id="seq_NP_189034.1_beta-amylase_1_Arabidopsis_thaliana" spec="Sequence" taxon="NP_189034.1_beta-amylase_1_Arabidopsis_thaliana" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALNLSHQLGVLAGTPIKSGEMT-----------------------DSSLLS-IS-PPSARMMTPKA------MNR-NYKAHGTDPSPPMSPILGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAD---------------------------------------------------------------------------------------------------LSVACKAFAVENGI------------------------------------------------------------------------------------------------------------------------------GTIEEQRT-Y------R-EGGIG-GKKEGGGGVPVFVM-------MPLDSVTM-GNTV--NRRKAMKASLQALK-SAGVEGIMIDVWWGLVEKESPGTYNWGGYNELLELAKKLGLKVQAVMSFHQCGGNVGDSVTIPLPQWVVEEVDKDPDLAYTDQWG-----RRNHEYISLGADTL-PVLKGRTPVQCYADFMRAFRDNFKHLLGE-TIVEIQVGMGPAGELRYPSYPEQEGTWKFPGIGAF-------QCYDKYSLSSLKAAAETYGKPEWGSTGPTD-AGHYNNWPEDTQFFKK-EGGGWNSEYGDFFLSWYSQMLLDHGERILSSAKSIFE-NM-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VKISVKIAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPIAQMLARH-NAIFNFTCIEMRDHEQ---PQDALCAPEKLVNQVALATLAAEVPLAGENALPRYDDYAH-----EQILKASALNLDQNNE------------GEPREMCAFTYLRMNPELFQADNWGKFVAFVKKMG-E-GRDSHRC-RE--E---V-E-REAEHF----VHVTQPL-----------------------------V--------------------QEAA-----VA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-TH---"/>
+                            
+        <sequence id="seq_OAE23062.1_hypothetical_protein_AXG93_3509s1060_Marchantia_polymorpha_subsp._ruderalis" spec="Sequence" taxon="OAE23062.1_hypothetical_protein_AXG93_3509s1060_Marchantia_polymorpha_subsp._ruderalis" totalcount="20" value="------MMNIM----------------------------------------------EQHLEHLDSLDQL--DTETGSDS-DMLALTPAQSGQERKSR---------------------------------------------------------------------------------------------------------------RGGRPRSLVWQHFIVSGERTDK------SRR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FNVCCKS--CGIDMVSRLGTMEKHI-----------A------FECEKADPDG--R-V--------------------------------------------------------------------------------------------------KIQERLAVKSAQIIG-------------------------------------------------------------------------------------------------------------------HAAKRVKKEGRRKLFEV-H--------ERDFE-RDFAGTTYIPIYVM-------LPLNTIDEN-NEV--SDPEFLKYDLRALK-SVNVDGVMVDCWWGLVEGKAPQHYNWNGYRQLFNIVREAGLKLQVVMSFHQCGGNVGDDTNIPIPSWVLDIGEKNPDIFFTDRQG-----VRNPECLSWGVDKE-RVLAGRTGLEIYYDFMRSFRSQFDEFFEDGTITEIEVGLGACGELRYPSYPERHG-WKYPGIGEF-------QVYDKYLQKSLTKAAVQRGHGDWAR-APDN-AGEYNSRPQDTGFFRD-G-GDYDSYYGRFFLKWYSQVLIEHGDNVLTLANLAFE-GY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIAAKVSGIHWWYKTASHAAELAAGFYNPSN-----RDGYAPIAEMLAKH-KAALNFTCVELRTSSQEEGHPEAMADPEGLVWQVLNAAWDSNISVASENALPCYDRDGY-----NKILENAKPLKD------------P----DGRHLVAFTYLRLNPTLMEDSNLDEFALFVKRLH-G-KQTHFS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S"/>
+                            
+        <sequence id="seq_PRW56984.1_Beta-amylase_chloroplastic_isoform_A_Chlorella_sorokiniana" spec="Sequence" taxon="PRW56984.1_Beta-amylase_chloroplastic_isoform_A_Chlorella_sorokiniana" totalcount="20" value="---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ML-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRIYQA------------------S----------------------------------DA--RM-A------P-ARQRARITAPV-RGVPVYVMLPLDTVWLLERDGATQ-PLL-I-REKAMEVGLEMLS-RAGVDGVMIDVWWGIAEHAGPGHYDFSAYRKLFEQVASKGLKVQAVMSFHAAGNNVGDCCRISLPRWVVEAGEADPDIFFTDSSG-----YRNRECLSIGADEQ-PVLAGRTPIQAQADFIAAFADEFGDMLG-GVITEVTVGMGPAGELRYPSYPEGDGRWRFPGIGQF-------QCYDKYMLASLREAALAAGHPEWGHGGPHD-SGSYNSHSSETGFFKSYG-GSWDTEYGRFFLNWYSGLLNQHADRLLGAARQVLS-AR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CR-------------PRTMREARELSDG-----------------------------------------------GMLYVF-EPAVQLGIKLAGVHWWFKSRAHAAELTAGYYNTRE-----RNGYLPIFEMLKRH-GATASFTCVEMRDCEH---PIEGRCSPEGLLNQVLSTAARVGVPMSGENALQRYDQWAF-----DKICDSAFG-----------------QSVMAGRLEKLTFLRMGDMMI-D-NWSAFGAFLQRLT-C-PP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S"/>
+                            
+        <sequence id="seq_PTQ29109.1_hypothetical_protein_MARPO_0147s0005_Marchantia_polymorpha" spec="Sequence" taxon="PTQ29109.1_hypothetical_protein_MARPO_0147s0005_Marchantia_polymorpha" totalcount="20" value="------MA-VS----------------------------------------------LMSGIH-VGLNAQ--CARAASAP-ACQANADADAARKVSEL---------------------------------------------------------------------------------------------------------------RLGGFRLNKWQGLKCDGRARRD------ALL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPISSNS--R--------RDSPRMI-----------R------AEAAQQEGDV--A-V--------------------------------------------------------------------------------------------------RTQELTVEKPVES------------------------------------------------------------------------------------------------------------------------------TEDDQVKV-H--------ERDFE-RDFAGTTYIPIYVM-------LPLNTIDEN-NEV--SDPEFLKYDLRALK-SVNVDGVMVDCWWGLVEGKAPQHYNWNGYRQLFNIVREAGLKLQVVMSFHQCGGNVGDDTNIPIPSWVLDIGEKNPDIFFTDRQG-----VRNPECLSWGVDKE-RVLAGRTGLEIYYDFMRSFRSQFDEFFEDGTITEIEVGLGACGELRYPSYPERHG-WKYPGIGEF-------QVYDKYLQKSLTKAAVQRGHGDWAR-APDN-AGEYNSRPQDTGFFRD-G-GDYDSYYGRFFLKWYSQVLIEHGDNVLTLANLAFE-GY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIAAKVSGIHWWYKTASHAAELAAGFYNPSN-----RDGYAPIAEMLAKH-KAALNFTCVELRTSSQEEGHPEAMADPEGLVWQVLNAAWDSNISVASENALPCYDRDGY-----NKILENAKPLKD------------P----DGRHLVAFTYLRLNPTLMEDSNLDEFALFVKRLH-G-ESI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H"/>
+                            
+        <sequence id="seq_XP_001691372.1_uncharacterized_protein_CHLRE_06g307150v5_Chlamydomonas_reinhardtii" spec="Sequence" taxon="XP_001691372.1_uncharacterized_protein_CHLRE_06g307150v5_Chlamydomonas_reinhardtii" totalcount="20" value="------MPTS-------------------------------------------------LPQC-----------PS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APRSVQPLRSALLAAQRLSQC-------------RG-SRSQRGS-------GACHSQGR-------------------------Q-------------------------------------------------VTHPTAHPRTSR----------------------TLDDDSGF-----------A------SFAPEPIVTT----------------PGAS----------------------------------------------------------------------------------------------------------------------------------------------------------AFSEVEDDLQIHRLLRET-----GQHIK--IPMIDE----------------------------------DRFDTQ-Y------P-ESQAE-EPSSSGSGCPVYVMLPLDTVWVVERDGKRI-SVL-K-KERSLDIALHTLK-QAGVEGVMVDVWWGIVERAGPRQYDFSAYKRLFYKVAAAGLKVQAVMSFHAAGGNVGDTCKIPLPKWVLEIGERNPDIFYTDKAG-----HRNRECLSLGCDEV-PLFWGRTPVLMYRDFINAFADKFQHLFG-TVITEVTVGLGPAGELRYPSYPEGDGRWRFPGVGEF-------QCYDKFMLESLRRTAEAAGHAEWGLSGPHD-AGHYNSSSWETGFFVSQN-GSWNTAYGHFFLSWYSNMLLEHADRVLSSAAEVLN-KH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GR-------------PRVFNSMRDASNG-----------------------------------------------HVIYEF-TPACKMGIKLAGVHWWFKSRAHAAELTAGYYNTRD-----RDGYLPFMAMLRRH-DASLSFTCVEMRDCEH---PPEGRCSPQALLQQVIEAAEKYGVPLSGENALQRYDDYAF-----ERIAESAFG-----------------RNARAGRLTQVTFLRMGDLMF-D-NWDAFSRFLNRMR-N-K----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A"/>
+                            
+        <sequence id="seq_XP_002968794.2_beta-amylase_1_chloroplastic_Selaginella_moellendorffii" spec="Sequence" taxon="XP_002968794.2_beta-amylase_1_chloroplastic_Selaginella_moellendorffii" totalcount="20" value="------MSSSS-------------------------------------------------------------------------------------------------------------IVGRGRALFPESE--PSTSASVWNPDFSTTRVS-----------------------CSTLAR-RS-IICHMASPPAE------EWW-KQQPQQHRSSSPISCFP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SQVASHG--PALA------PDFFEE-----------R--------PFELQ--HGIS---------------------------------------------------------------------------------------------------SPSPSGF----PSK------------------------------------------------------------------------------------------------------------------------------IAPPVEKE-H------S-AQETP-TSKGKRSGVPVYVM-------LPLDSINSGNNQV--NRARAMNASFQALK-SAGVEGVMVDVWWGIVEKDGPCNYNWSGYRELLEMAKKHGLKVQAVMSFHQCGGNVGDSAFIPLPWWVVEEAKNNPDMVYTDRYG-----NRNFEYLSLGCDHL-PVLKGRTPVQAYSDFMRSFKESFSDMLGD-VIVEIQVGMGPAGELRYPGYPERDGIWKFPGVGEF-------QCHDNYMLASLKASAESIGKPDWGC-APSD-AGHYNQWPEDSIFFKR-D-GGWNTDYGRFFLEWYSGKLIEHGESVLTAAEGIFR-GS-P----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRLSAKVAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPLARMFGRH-GVTFNFTCFEMRDVEQ---PAAAQCSPEGLLKQVVAAAKSAGVPLAGENALPRYDEGAY-----HQIVMKSRLEVEGEES----------MERAYEPMCCFTFLRMNERLFHPENWRRFVQFVKEIG-D-GKGSSSS--R--E---H-E-HRASEL----LVATKPL-----------------------------I--------------------QEAA-----AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L--V---"/>
+                            
+        <sequence id="seq_XP_023758910.1_beta-amylase_3_chloroplastic_Lactuca_sativa" spec="Sequence" taxon="XP_023758910.1_beta-amylase_3_chloroplastic_Lactuca_sativa" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALTLRSSTF--LNLKDIKT-LK------------------------TLDV-DFV-TTICFAQIKPT------TR--RLRTRNSIQDAQLSREK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MISPFEGMYDAQ------------------------------------------------------------------------------------------------------------------------------KEKFHALS-S------------S-HQMQNDSKVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-NAGVEGVMVDVWWGLVEKDGSLKYNWEGYVELVNMVQKHGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISRNPDLVYTDRSG-----RRNPEYLSLGCDSL-PVLRGRTPIQVYSDFMRSFKQRFKNYLGN-VIVEIQVGMGPCGELRYPSYPESNGTWKFPGIGEF-------QCYDKYMRASLEAAADANGKKDWGNSGPHD-SGQYNQFPEDTGFFRR-E-GTWDTDYGRFFMEWYSGKLLEHGDKILGSADRIFR-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKLSGKVAGIHWHYKTRSHAAELTAGYYNTRH-----SDGYLPIAKMLAKY-DVVFNFTCMEMRDNEQ---PQHANCSPEGLVRQVKLAVKAAGIGLAGENALERYDGGAY-----AQVLTTSR-------------------SDSGNGLCAFTFLRLNKRLFEAENWRQLVNFVRSMS--EGGRV-RQ-PE--S---D-S-STTDLY----VRFVDNK-------------------------------------------LKSL--KEDKE-----AV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L--L---"/>
+                            
+        <sequence id="seq_XP_024357748.1_beta-amylase_2_chloroplastic-like_Physcomitrium_patens" spec="Sequence" taxon="XP_024357748.1_beta-amylase_2_chloroplastic-like_Physcomitrium_patens" totalcount="20" value="------MSIG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E-AEHAE-CPSPVTPYIPTYVM-------LPLSTISNE-NKV--ADPEKLKEDLDKLK-RASVDGVMIDCWWGIVEGVTPQVYDWSAYYDLFSMVRDCKLKLQAIMSFHQCGGNVGDDVFIPLPAWVLRVGKENPDIFFTNRAG-----VRNPESLTFGIDDE-AVLDSRTALEVYYDFMESFRKDMQEFLEDGTITEIEVGMGPCGELRYPSYPETQG-WKYPGTGEFQ-------CWDKYLLKNLKNAANEKEHPEWGV-GPAD-AGDYNCTPHNSAFFEE-G---RKSPYGEFFLDWYSRALIEHGDNLLTVARHALG-NT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLAVKVSGIHWWYKSASHAAELAAGYYNQAS-----KCGYTPIAKMLATH-DATLNFTCVELRTADETVKFPGALADPEGLVSQVLRAAWEQGVEVAAENALSFYEKSGY-----DQILVQAKP-K----D--------Y----TNHHLSAFTYLRLTPELMEEQNLEEFTQFVHKLH-G-AQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C"/>
+                            
+        <sequence id="seq_XP_024365489.1_beta-amylase_1_chloroplastic-like_Physcomitrium_patens" spec="Sequence" taxon="XP_024365489.1_beta-amylase_1_chloroplastic-like_Physcomitrium_patens" totalcount="20" value="-----------------------------------------------------------------------------------------------------------------------------MSSAMCRSATLANRFVCGNVLTDRLQSE-----------------------ASSSGR-VE-LARFSARRAVP------GVS-CSQRNQSDGHVAHTSSGSVS----S------FG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SLS-SEE--WWRK--NTGSAGDSTG-----------G--------LRATH--HTQM---------------------------------------------------------------------------------------------------DTMFPEHKSLLDWD------------------------------------------------------------------------------------------------------------------------------NTADEWKE-H------A-FHETP-TSRGVHGGVPVFVM-------LPLDSVNIN-NTL--KRRRALNASLLALK-SAGVEGVMMDVWWGIVEKEGPRNYNWSAYRELIDMVRKHGLKVQAVMSFHQCGGNVGDSCNIPLPPWVLEEVQKNPDLAYTDKAG-----KRNAEYISLGADNV-PALKGRTPVQCYADFMRSFRDNFKDLLGD-VIIEIQCGMGPAGELRYPSYPESEGRWRFPGIGEF-------QCYDKYMLASLKANAQALGKPAWGHGGPCD-AGNYNQWPDETGFFHR-D-GSWCSEYGQFFMEWYSEMILAHGERLLASASGIFK-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVISGKVAGIHWHYGTRSHAAELTAGYYNTRT-----RDGYATIAQMFAKY-GVTLNFTCIEMRDYEQ---PSQASCSPEGLVRQVALATRRAGIPMAGENALPRFDSSAH-----EQIVRKSRLRMNEHGD----------CHEEYEPMAAFTFLRMCESLFHSENWKLFVPFVRHME-E-GRTFQPW--E--E---E-H-HRTETH----VHATRPL-----------------------------V--------------------QEAA-----S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LM-Y---"/>
+                            
+        <sequence id="seq_XP_024517073.1_beta-amylase_2_chloroplastic_Selaginella_moellendorffii" spec="Sequence" taxon="XP_024517073.1_beta-amylase_2_chloroplastic_Selaginella_moellendorffii" totalcount="20" value="------MRQAL-----------------------------------------------LSQAAMDTRFLC--CPVALLPR-CHPKLAPAARSNHFVQA---------------------------------------------------------------------------------------------------------------ITARKVSNLASHKMVSRSSTSS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--A-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVEEMTKE----------EEKEE-RDFAGTPYVPIYVM-------LPLGLISES-NEL--VNPEGIRRDLQALK-SVNVDGVMVDCWWGLVE-DTPQKYNWCAYRELFTIVKESDLKLQVVMSFHQCGGNVGDDVNIPIPKWVLEIGKENPDIFFTDKHG-----HRNPECLTWGVDKE-RVLKSRTGLEVYFDYMRSFRQEFDDLFQSGVIAEIEVGLGACGELRYPSYVPRSG-WEYPGIGEFQ-------CYDKYLIKSLKQAAEARGHTEWGC-CPDN-AGEYNSKPQETDFFRD-G-GDYDSYYGRFFLKWYSKVLIEHGDRVLMLAKLAFE-GF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HIASKVSGIHWWYKTASHAAELAAGFYNPCN-----RDGYVEIAEMFAKH-DASLNFTCVELRTLAQEEDFPEALADPEGLVWQVLNAAWDAGIYVASENALPCYDRDGY-----NKILENAKPSKN------------P----DGRHISAFTYLRLSPVLMEEHNLQEFARFVKRLHG--EG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V"/>
+                            
+        <sequence id="seq_XP_025876615.1_beta-amylase_1_chloroplastic-like_Oryza_sativa_Japonica_Group" spec="Sequence" taxon="XP_025876615.1_beta-amylase_1_chloroplastic-like_Oryza_sativa_Japonica_Group" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALNLAQSAAAAACFATAG---------------------------DARRAA-SV-VAMPSSSSSAT------TSL-RMKRQAACE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P------VA-----------------------------------------------------------------------------------------------------------------------------------CRAVAR-----------HVAAA-AASSRRNGVPVFVM-------MPLDTVSKCGSAL--NRRKAVAASLAALK-SAGVEGIMVDVWWGIVESEGPGRYNFDGYVELMEMARKTGLKVQAVMSFHQCGGNVGDSVNIPLPRWVVEEMEKDNDLAYTDQWG-----RRNFEYISLGCDAM-PVFKGRTPVECYTDFMRAFRDHFASFLGD-TIVEIQVGMGPAGELRYPSYPESNGTWRFPGIGAF-------QCNDRYMRSSLKAAAEARGKPEWGHGGPTD-AGGYNNWPEDTVFFRG-DCGGWSTEYGEFFLSWYSQMLLEHGERVLSGATSVFGDGA-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKISVKVAGIHWHYGTRSHAPELTAGYYNTRH-----RDGYLPIARMLARH-GAVLNFTCVEMRDHEQ---PQEAQCMPEALVRQVAAAARAAGVGLAGENALPRYDGTAH-----DQVVAAAADR------------------AAEDRMVAFTYLRMGPDLFHPDNWRRFVAFVRRMS-E-SGSP----RE--A---A-E-SAAHGV----AQATGSL-----------------------------V--------------------HEAA-----VA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-RS---"/>
+                            
+        <sequence id="seq_XP_042923635.1_uncharacterized_protein_CHLRE_06g270350v5_Chlamydomonas_reinhardtii" spec="Sequence" taxon="XP_042923635.1_uncharacterized_protein_CHLRE_06g270350v5_Chlamydomonas_reinhardtii" totalcount="20" value="---------M---------------------------------------------------RASIDRQCC---AAASSPA-S---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARCPILGLLSRGQKRLGWRLGGHIASS--------------PHAEL--------------------------------------------------------------------------------------------------------------T----------------------SPTPVAA-----------G------ATARA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-APTWR-STVDEEAVLPLYTCLDGDILTPAN--------KF--AYYEALRSGLKALR-ALGINGISVDVYWGIVEGAAPMEYDWSSYKQLFALIRDEGFMAQVCLCFHGTEA-------VPLPAWVLAAGAANPDIYFTDRA-----GVRNTHCISLGVDEVP-ALDGRTALACYRDLMTSFRVELEPLLG-STIVDVCVGLGPDGELKYPAHPRDRR-WNFPGIGEF-------QCYDKYMLAGLRACSHQVSQPSWGLGGPHD-AGAYTVWPQQTGFFNQ-Y-GNWSSPYGKFFLQWYSDMLMQHADSVLGIARDVLL-PAD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSLSFSGSSAGFGSSSSSSSVRPGFYGNGYGNGNGIWRG---------------------------------------SPAAAAEPPR------------------------------------------------------------------------------------------------------------------------------------------------------LRLHAKLPGVHWWYNTASRAPELTAGFYNTTS-----RDGYLPIMEVLSRH-GISVRLRSAEMRSSEIA--PQQACCDPERQVAQQRTVAAALLVPVGLENAHERFD-----ESALARLEASLFDTSVH-------------EGIELPQVQSLVFNRMCDSMFEPGNWSRFKEFVRRVR-N-RADTLVV-PAWRWRGGP----GSSMD-----GMALPL-T-----------------------------------------VELP--M-GGE----PQQVS-AGSGSNVAMAAAAAAAAAAAAVAAGNGHG-----------------------------------------------SGA--------------------------------------------------------------TGAAGGGGDA------------------GMTAAAPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSAGALQL----------------------------------V"/>
+                            
+        <sequence id="seq_XP_042928768.1_uncharacterized_protein_CHLRE_01g044100v5_Chlamydomonas_reinhardtii" spec="Sequence" taxon="XP_042928768.1_uncharacterized_protein_CHLRE_01g044100v5_Chlamydomonas_reinhardtii" totalcount="20" value="------MSSE---------------------------------------------------NILLDRALS---VQGPGYG-Y----------------------------------------------------------------------------------------------------------------------------------L---------------------------------------------------------------------------------------------------------HLGG---------VY----------GDCVATTALGYRAAA--------------PSMPAS-------ASVPS-----------------------------------F-----------------------------------------------------GQSGVLR-P----------------------HPRRYSQ-----------N------AFGTS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-S-PVH-GPSDGGTGANVYCMLPLDTVNSEG--------VFRYAGSAWFAQALQLLV-ASGAHGVAMDFWWGAVER-SPGQYNWSGYKQALEVIKQTGLKVQVVLSFHACGGNVGDTVQIPLPDWVVQCAEADPDLFFADRPRNGGLGNRNREYLSIWADDAPGVLRGRSPMQCYEEYMVSLRENFSQELG-TVIDEVVVGAGPCGELRLPSYVEANG-WRFPGAGEF-------QCYDRRALASLAQAAREAGHPEWGYTGPHD-AGEYNSTPEHTGFFSH-N-GSWNTPYGRFFLEWYSGCLLKHGDRLLTVANAVFA-SKLNPPPQPPQSLLQTLGAAGSALAAQLQQVAQQTVGSLGHGSSGGNAMGNGAGSGPSSSHGVQAFLSPMAPGGMNSYVTNTPFQPMSFMGLHTSQTSSGGPRMSTHSLNRILETGGSCGSRPGSGHASGNELTGSASADGGGMPPPPAPPLPRRQATEGMLSSCGVPSSISPCCTYSSMSTYTGTSSGGASGSTANMIMATAGSSGSLMSPRSMSVFHGTACGAPHSEAHGAVGAAAAAGTVLGGRRSSGGGAAGSPQNASGVFSAAMNAMVTRGVATAAALMQAAAAQGGAATSMAATNARAVAAACGSSSRTSSDSAAATNVGTTGAAALASGDATMIDVEPSDNSHTSTVAELMNAQGLSGSSNASGPLAHPLNAAAQPGTLAPTAVTAAASGAIVAAPGAGHASCHPSPLSGVRFRSSASTLADAEPMFGSGQGTAFAAVAAAGVIIASGHTARMDLCNSLSSLSTEFTTTGATNGAGNIASMHYLDVAASLVADGDDESDVGTSCCTAGAAEEADELFLGAGNSAGRTPHPSISEHAAALSLVPVAGRPLHHGQSAGTSSGSSGGGLQAQLQQLQPPHGARMAGIYSDDGRRSSAELSGMGLGVATLGVGMSTA------SAGTAVISGVGGVGGVAAAATNPVTALLSPTTSYHTAGTAPALATSSGGGAGAALYGATGMHLALKIAGIHWWYRSRSHAAELTAGYYNVDG-----HDGYEAIVNLCARH-RANLVLTCVEMCDSQHP---AQAQCGPEGLLRQLRQLAARAGVQLSGENALPIFSSGGVDNDALDRIVNNMRSWPMP-----------------NNNVNSRVGISPAPSMVMPSGNGNGNGNGNGNG-N-GAHASSG-GN-IVCVGY----RM------------SE-S--GRMV---------------------PV------------GTAA--SAVVN----ANGNG-SGNGNGYGLNGASGSQSAAESGSQINGQPTSAVTPHGSTDLNGAYSTCLSPAPPEVLPSLRAFTFLR---------LVP--------------------------------------------------------------EMLLPGYQSL------------------WMRFMGKL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LA----------------------------------------S"/>
+                            
+        <sequence id="seq_XP_043639661.1_beta-amylase_3_chloroplastic_Erigeron_canadensis" spec="Sequence" taxon="XP_043639661.1_beta-amylase_3_chloroplastic_Erigeron_canadensis" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALTLRSSSTCFLNLKDIIKSST-------------PPPAAAALKTTTLHD-DFTATAVINNSIKPI------IL--RRRLIKSSMQSEINVQYN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LA-----P---------------------------PPQK--SI-----------------------------------------------------------------------------------------------------MMTSSPFEGTYEEQ------------------------------------------------------------------------------------------------------------------------------KEKFHALS-T------S-SRHDE-SQNGSSSRVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-GAGVEGIMVDVWWGLVEKDGPGKYNWEGYVELVNMVQRHGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISRNPDLVYTDKSG-----RRNPEYISLGCDSL-PVLRGRTPIQVYSDFMTSFQQRFKNYLGD-VVVEIQVGMGPCGELRYPSYPESNGTWRFPGIGEF-------QCYDKYMKASLEAAADANGEKNWGKSGPHD-SGQYNQFPEDTGFFKR-D-GTWDTDYGRFFMEWYSGKLLQHGDRILGSADSIFR-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKLSGKVAGIHWHYKTRSHAAELTAGYYNTRH-----SDGYLPIARMLAKH-DVVLNFTCMEMRDNEQ---PRHADCSPEGLVRQVKMAVKEARVDLAGENALERYDSGAY-----GQILKTSK-------------------SDSGNELCAFTYLRLNKRLFEAENWRELVNFVRSMS-SEGGKA-RL-PA--S---D-S-TRTDLY----VRFVDHK-------------------------------------------LKRL--KDDME-----IV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L--V---"/>
+                        
+    </data>
+        
+
+
+
+
+
+    
+
+
+
+
+
+    
+
+
+
+    <map name="Uniform" >beast.base.inference.distribution.Uniform</map>
+
+    
+
+    <map name="Exponential" >beast.base.inference.distribution.Exponential</map>
+
+    
+
+    <map name="LogNormal" >beast.base.inference.distribution.LogNormalDistributionModel</map>
+
+    
+
+    <map name="Normal" >beast.base.inference.distribution.Normal</map>
+
+    
+
+    <map name="Beta" >beast.base.inference.distribution.Beta</map>
+
+    
+
+    <map name="Gamma" >beast.base.inference.distribution.Gamma</map>
+
+    
+
+    <map name="LaplaceDistribution" >beast.base.inference.distribution.LaplaceDistribution</map>
+
+    
+
+    <map name="prior" >beast.base.inference.distribution.Prior</map>
+
+    
+
+    <map name="InverseGamma" >beast.base.inference.distribution.InverseGamma</map>
+
+    
+
+    <map name="OneOnX" >beast.base.inference.distribution.OneOnX</map>
+
+    
+
+    <run id="mcmc" spec="MCMC" chainLength="1000000">
+            
+        <state id="state" spec="State" storeEvery="5000">
+                    
+            <tree id="Tree.t:g31563_select" spec="beast.base.evolution.tree.Tree" name="stateNode">
+                            
+                <taxonset id="TaxonSet.g31563_select" spec="TaxonSet">
+                                    
+                    <alignment idref="g31563_select"/>
+                                
+                </taxonset>
+                        
+            </tree>
+                    
+            <parameter id="birthRate.t:g31563_select" spec="parameter.RealParameter" lower="0.0" name="stateNode">1.0</parameter>
+                    
+            <tree id="Tree.t:g41182_select" spec="beast.base.evolution.tree.Tree" name="stateNode">
+                            
+                <taxonset id="TaxonSet.g41182_select" spec="TaxonSet">
+                                    
+                    <alignment idref="g41182_select"/>
+                                
+                </taxonset>
+                        
+            </tree>
+                    
+            <parameter id="birthRate.t:g41182_select" spec="parameter.RealParameter" lower="0.0" name="stateNode">1.0</parameter>
+                
+        </state>
+            
+        <init id="RandomTree.t:g31563_select" spec="RandomTree" estimate="false" initial="@Tree.t:g31563_select" taxa="@g31563_select">
+                    
+            <populationModel id="ConstantPopulation0.t:g31563_select" spec="ConstantPopulation">
+                            
+                <parameter id="randomPopSize.t:g31563_select" spec="parameter.RealParameter" name="popSize">1.0</parameter>
+                        
+            </populationModel>
+                
+        </init>
+            
+        <init id="RandomTree.t:g41182_select" spec="RandomTree" estimate="false" initial="@Tree.t:g41182_select" taxa="@g41182_select">
+                    
+            <populationModel id="ConstantPopulation0.t:g41182_select" spec="ConstantPopulation">
+                            
+                <parameter id="randomPopSize.t:g41182_select" spec="parameter.RealParameter" name="popSize">1.0</parameter>
+                        
+            </populationModel>
+                
+        </init>
+            
+        <distribution id="posterior" spec="CompoundDistribution">
+                    
+            <distribution id="prior" spec="CompoundDistribution">
+                            
+                <distribution id="YuleModel.t:g31563_select" spec="beast.base.evolution.speciation.YuleModel" birthDiffRate="@birthRate.t:g31563_select" tree="@Tree.t:g31563_select"/>
+                            
+                <distribution id="YuleModel.t:g41182_select" spec="beast.base.evolution.speciation.YuleModel" birthDiffRate="@birthRate.t:g41182_select" tree="@Tree.t:g41182_select"/>
+                            
+                <prior id="YuleBirthRatePrior.t:g31563_select" name="distribution" x="@birthRate.t:g31563_select">
+                                    
+                    <Uniform id="Uniform.1" name="distr" upper="Infinity"/>
+                                
+                </prior>
+                            
+                <prior id="YuleBirthRatePrior.t:g41182_select" name="distribution" x="@birthRate.t:g41182_select">
+                                    
+                    <Uniform id="Uniform.4" name="distr" upper="Infinity"/>
+                                
+                </prior>
+                        
+            </distribution>
+                    
+            <distribution id="likelihood" spec="CompoundDistribution" useThreads="true">
+                            
+                <distribution id="treeLikelihood.g31563_select" spec="ThreadedTreeLikelihood" data="@g31563_select" tree="@Tree.t:g31563_select">
+                                    
+                    <siteModel id="SiteModel.s:g31563_select" spec="SiteModel">
+                                            
+                        <parameter id="mutationRate.s:g31563_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="mutationRate">1.0</parameter>
+                                            
+                        <parameter id="gammaShape.s:g31563_select" spec="parameter.RealParameter" estimate="false" lower="0.1" name="shape">1.0</parameter>
+                                            
+                        <parameter id="proportionInvariant.s:g31563_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter>
+                                            
+                        <substModel id="Blosum62.s:g31563_select" spec="Blosum62"/>
+                                        
+                    </siteModel>
+                                    
+                    <branchRateModel id="StrictClock.c:g31563_select" spec="beast.base.evolution.branchratemodel.StrictClockModel">
+                                            
+                        <parameter id="clockRate.c:g31563_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="clock.rate">1.0</parameter>
+                                        
+                    </branchRateModel>
+                                
+                </distribution>
+                            
+                <distribution id="treeLikelihood.g41182_select" spec="ThreadedTreeLikelihood" data="@g41182_select" tree="@Tree.t:g41182_select">
+                                    
+                    <siteModel id="SiteModel.s:g41182_select" spec="SiteModel">
+                                            
+                        <parameter id="mutationRate.s:g41182_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="mutationRate">1.0</parameter>
+                                            
+                        <parameter id="gammaShape.s:g41182_select" spec="parameter.RealParameter" estimate="false" lower="0.1" name="shape">1.0</parameter>
+                                            
+                        <parameter id="proportionInvariant.s:g41182_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter>
+                                            
+                        <substModel id="Blosum62.s:g41182_select" spec="Blosum62"/>
+                                        
+                    </siteModel>
+                                    
+                    <branchRateModel id="StrictClock.c:g41182_select" spec="beast.base.evolution.branchratemodel.StrictClockModel">
+                                            
+                        <parameter id="clockRate.c:g41182_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="clock.rate">1.0</parameter>
+                                        
+                    </branchRateModel>
+                                
+                </distribution>
+                        
+            </distribution>
+                
+        </distribution>
+            
+        <operator id="YuleBirthRateScaler.t:g31563_select" spec="kernel.BactrianScaleOperator" parameter="@birthRate.t:g31563_select" upper="10.0" weight="3.0"/>
+            
+        <operator id="YuleModelTreeRootScaler.t:g31563_select" spec="kernel.BactrianScaleOperator" rootOnly="true" scaleFactor="0.5" tree="@Tree.t:g31563_select" upper="10.0" weight="3.0"/>
+            
+        <operator id="YuleModelUniformOperator.t:g31563_select" spec="kernel.BactrianNodeOperator" tree="@Tree.t:g31563_select" weight="30.0"/>
+            
+        <operator id="YuleModelSubtreeSlide.t:g31563_select" spec="kernel.BactrianSubtreeSlide" tree="@Tree.t:g31563_select" weight="15.0"/>
+            
+        <operator id="YuleModelNarrow.t:g31563_select" spec="Exchange" tree="@Tree.t:g31563_select" weight="15.0"/>
+            
+        <operator id="YuleModelWide.t:g31563_select" spec="Exchange" isNarrow="false" tree="@Tree.t:g31563_select" weight="3.0"/>
+            
+        <operator id="YuleModelWilsonBalding.t:g31563_select" spec="WilsonBalding" tree="@Tree.t:g31563_select" weight="3.0"/>
+            
+        <operator id="YuleModelBICEPSEpochTop.t:g31563_select" spec="EpochFlexOperator" scaleFactor="0.1" tree="@Tree.t:g31563_select" weight="2.0"/>
+            
+        <operator id="YuleModelBICEPSEpochAll.t:g31563_select" spec="EpochFlexOperator" fromOldestTipOnly="false" scaleFactor="0.1" tree="@Tree.t:g31563_select" weight="2.0"/>
+            
+        <operator id="YuleModelBICEPSTreeFlex.t:g31563_select" spec="TreeStretchOperator" scaleFactor="0.01" tree="@Tree.t:g31563_select" weight="2.0"/>
+            
+        <operator id="YuleBirthRateScaler.t:g41182_select" spec="kernel.BactrianScaleOperator" parameter="@birthRate.t:g41182_select" upper="10.0" weight="3.0"/>
+            
+        <operator id="YuleModelTreeRootScaler.t:g41182_select" spec="kernel.BactrianScaleOperator" rootOnly="true" scaleFactor="0.5" tree="@Tree.t:g41182_select" upper="10.0" weight="3.0"/>
+            
+        <operator id="YuleModelUniformOperator.t:g41182_select" spec="kernel.BactrianNodeOperator" tree="@Tree.t:g41182_select" weight="30.0"/>
+            
+        <operator id="YuleModelSubtreeSlide.t:g41182_select" spec="kernel.BactrianSubtreeSlide" tree="@Tree.t:g41182_select" weight="15.0"/>
+            
+        <operator id="YuleModelNarrow.t:g41182_select" spec="Exchange" tree="@Tree.t:g41182_select" weight="15.0"/>
+            
+        <operator id="YuleModelWide.t:g41182_select" spec="Exchange" isNarrow="false" tree="@Tree.t:g41182_select" weight="3.0"/>
+            
+        <operator id="YuleModelWilsonBalding.t:g41182_select" spec="WilsonBalding" tree="@Tree.t:g41182_select" weight="3.0"/>
+            
+        <operator id="YuleModelBICEPSEpochTop.t:g41182_select" spec="EpochFlexOperator" scaleFactor="0.1" tree="@Tree.t:g41182_select" weight="2.0"/>
+            
+        <operator id="YuleModelBICEPSEpochAll.t:g41182_select" spec="EpochFlexOperator" fromOldestTipOnly="false" scaleFactor="0.1" tree="@Tree.t:g41182_select" weight="2.0"/>
+            
+        <operator id="YuleModelBICEPSTreeFlex.t:g41182_select" spec="TreeStretchOperator" scaleFactor="0.01" tree="@Tree.t:g41182_select" weight="2.0"/>
+            
+        <logger id="tracelog" spec="Logger" fileName="$(filebase).log" logEvery="1000" model="@posterior" sanitiseHeaders="true" sort="smart">
+                    
+            <log idref="posterior"/>
+                    
+            <log idref="likelihood"/>
+                    
+            <log idref="prior"/>
+                    
+            <log idref="treeLikelihood.g31563_select"/>
+                    
+            <log id="TreeHeight.t:g31563_select" spec="beast.base.evolution.tree.TreeStatLogger" tree="@Tree.t:g31563_select"/>
+                    
+            <log idref="YuleModel.t:g31563_select"/>
+                    
+            <log idref="birthRate.t:g31563_select"/>
+                    
+            <log idref="treeLikelihood.g41182_select"/>
+                    
+            <log id="TreeHeight.t:g41182_select" spec="beast.base.evolution.tree.TreeStatLogger" tree="@Tree.t:g41182_select"/>
+                    
+            <log idref="YuleModel.t:g41182_select"/>
+                    
+            <log idref="birthRate.t:g41182_select"/>
+                
+        </logger>
+            
+        <logger id="screenlog" spec="Logger" logEvery="1000">
+                    
+            <log idref="posterior"/>
+                    
+            <log idref="likelihood"/>
+                    
+            <log idref="prior"/>
+                
+        </logger>
+            
+        <logger id="treelog.t:g31563_select" spec="Logger" fileName="$(filebase)-$(tree).trees" logEvery="1000" mode="tree">
+                    
+            <log id="TreeWithMetaDataLogger.t:g31563_select" spec="beast.base.evolution.TreeWithMetaDataLogger" tree="@Tree.t:g31563_select"/>
+                
+        </logger>
+            
+        <logger id="treelog.t:g41182_select" spec="Logger" fileName="$(filebase)-$(tree).trees" logEvery="1000" mode="tree">
+                    
+            <log id="TreeWithMetaDataLogger.t:g41182_select" spec="beast.base.evolution.TreeWithMetaDataLogger" tree="@Tree.t:g41182_select"/>
+                
+        </logger>
+            
+        <operatorschedule id="OperatorSchedule" spec="OperatorSchedule"/>
+        
+    </run>
+
+    
+
+</beast>

runs/BEAST/xml_files/g41182_select_1e6.xml

+<?xml version="1.0" encoding="UTF-8" standalone="no"?><beast beautitemplate='Standard' beautistatus='' namespace="beast.core:beast.evolution.alignment:beast.evolution.tree.coalescent:beast.core.util:beast.evolution.nuc:beast.evolution.operators:beast.evolution.sitemodel:beast.evolution.substitutionmodel:beast.base.evolution.alignment:beast.pkgmgmt:beast.base.core:beast.base.inference:beast.base.evolution.tree.coalescent:beast.pkgmgmt:beast.base.core:beast.base.inference.util:beast.evolution.nuc:beast.base.evolution.operator:beast.base.inference.operator:beast.base.evolution.sitemodel:beast.base.evolution.substitutionmodel:beast.base.evolution.likelihood" required="BEAST.base v2.7.3" version="2.7">
+        
+
+    <data
+id="g41182_select"
+spec="Alignment"
+dataType="aminoacid"
+name="alignment">
+                            
+        <sequence id="seq_CBr_g41182_beta-amylase_3" spec="Sequence" taxon="CBr_g41182_beta-amylase_3" totalcount="20" value="------MSAAVSTVSNKWVSLNS---SKNRTSS----------RVKGGGGGGHCQRSPVVVVAAAPGTKS--GSRSRSPL-STSSSAAAARADLATGR---------------------------------------------------------------------------------------------------------------RRKSFLQTSSSSSSSSSPSSPSS------PSSSSFAHSRSHPELYVSFLAVRPSGGPVQARISSSSSRCIVAIDRRPFEAVSPTALSSIARTETLPCGFSRSCSLFPPPSSSSFFACSFASSSSSSSSSSSSSSRACASCSSSCPSSSSSSSSCPSTSSTERWELTSRAENPSSGGPHESEGPGCCASETSTESSLSSEFGVTLTHLPGAGPLSLTQLSGRKITTGWSHLAAVIRREKLKKSLKEAEDELSDIELCLRRAGLTSDQRKKVATVVGSRRDSSSSRELARAS--PPHPHPHPHPAASAGK-----------A------VAHSLAISDA--G-RFIGERGQTGGNSASIGPTWCRSGLCPAASAPPSLIQEHRQGRDSRWNGGAPKGACGVEEKVAERQKKKEEEEEREEREKREEREEKGDHQPAQHRWSCPAQSQLKEPGAL-----------LQLAVEGGVGAVNMVEGGDGPFRSTTGPTGRRPSMGNETSTTQSTMLDTPTSFYTLGHDGHHGWPTDSRDRGLE-N--QR--------------------------------------EDGRDR-G------T-AENES-EDGESASEVPVYVMLPLNTVSEQG--------LS---NPKMLETALKALK-NVGVRGVMVDVWWGVVERDEPRRYDWTPYRQLFVILRRLGLKLQAVMSFHSCGSNVGDDYKQPLPRWVLQIGDVDEDIYFADVHG-----NKNAECVSLFADEE-PVLHGRTPIQCYQDFMRSFRQELGEFIG-SVVVEVSVGMGPCGELRYPSYPEG--RWKFPGIGEF-------QCYDKRAAAHLRSAATARGHPEWGHCGPHD-SGTYNCFPHETGFFRDHG-GNWDTEYGRFFLEWYSGALLQHGERMLRAACRAFF-DV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DLSGMGYCSVARRSGPHTGNGRGGELQS-----------------------------------------------PWRSRT-DGQVKLSVKCAGVHWWYNTASHAAELTAGYYNTRK-----KRGYDDIVYMCWMY-GAELNFTCIEMRDSEQ---PGSAYCSPEGLLKQVRLAAARRRVPLTGENALSRYDDEAF-----RQMLTQSFEVVVDEDSSSERGQ--PKKRHLLPPLAGLTYLRLTPLLLDDVQFTRFKNFVESMR-R-RSRDTNR-VV--DASRR----AGQQP-----VCHRRG-----------------------------TS------------VGGG--AGGGGGPAAVVVVV-G----GEAAGGGGGAAGSPSSTSGSNNNGSPRHL--------------------------------D----------LD--------------------------------------------------------------LDLDFDF------------------------DFDFD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-----------------------------------------D"/>
+                            
+        <sequence id="seq_EFJ18922.1_hypothetical_protein_SELMODRAFT_419538_Selaginella_moellendorffii" spec="Sequence" taxon="EFJ18922.1_hypothetical_protein_SELMODRAFT_419538_Selaginella_moellendorffii" totalcount="20" value="---------------------------------------------------------------MDARFLC--CPVALLPR-CHPKLAPAARSNHFVQA---------------------------------------------------------------------------------------------------------------ITGRKVSNLASHKMVSRSSTSS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--A-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVEEMTKE----------EEKEE-RDFAGTPYVPIYVM-------LPLGLISES-NEL--VNPEGIRRDLQALK-SVNVDGVMVDCWWGLVE-DTPQKYNWSAYRELFTIVKESDLKLQVVMSFHQCGGNVGDDVNIPIPKWVLEIGKENPDIFFTDKHG-----HRNPECLTWGVDKE-RVLKSRTGLEVYFDYMRSFRQEFDDLFQSGVIAEIEVGLGACGELRYPSY-----------------------CYDKYLIKSLKQAAEARGHTEWGC-CPDN-AGEYNSKPQETDFFRD-G-GDYDSYYGRFFLKWYSKVLIEHGDRVLMLAKLAFE-GF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HIASKVSGIHWWYKTASHAAELAAGFYNPCN-----RDGYVEIAEMFAKH-DASLNFTCVELRTLAQEEDFPEALADPEGLVWQVLNAAWDAGIYVASENALPCYDRDGY-----NKILENAKPSKN------------P----DGRHISAFTYLRLSPVLMEEHNLHEFARGRRLRTLK-QA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K"/>
+                            
+        <sequence id="seq_EFJ25140.1_hypothetical_protein_SELMODRAFT_149606_partial_Selaginella_moellendorffii" spec="Sequence" taxon="EFJ25140.1_hypothetical_protein_SELMODRAFT_149606_partial_Selaginella_moellendorffii" totalcount="20" value="--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M-------LPLDSINSGNNQV--NRARAMNASFQALK-SAGVEGVMVDVWWGIVEKDGPCNYNWSGYRELLEMAKKHGLKVQAVMSFHQCGGNVGDSAFIPLPWWIVEEAKNNPDMVYTDRYG-----NRNFEYLSLGCDHL-PVLKGRTPVQAYSDFMRSFKESFSDMLGD-VIVEIQVGMGPAGELRYPGYPERDGIWKFPGVGEF-------QCHDNYMLASLKASAEAIGKPDWGC-APSD-AGHYNQWPEDSIFFKR-D-GGWNTDYGRFFLEWYSGKLIEHGESVLTAAEGIFR-GS-P----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRLSAKVAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPLARMFGRH-GVTFNFTCFEMRDVEQ---PAAAQCSPEGLLKQVVAAAKSAGVPLAGENALPRYDEGAY-----HQIVMKSRLEVEGEES----------MERAYEPMCCFTFLRMNERLFHPENWRRFVQFVKEIG-D-G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_GAQ79600.1_beta-amylase_Klebsormidium_nitens" spec="Sequence" taxon="GAQ79600.1_beta-amylase_Klebsormidium_nitens" totalcount="20" value="------------------------------------------------------------MSSGTPP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PYRIRAKSRG----VYHEEKLSNNTIH--F-S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLPG-S------G-PQVLS-REPLVQNHVPIYVM-------LPLDTVTIV-NTL--NHVKALNAGLRALK-SIGVAGVMVDVWWGIVEADGPRQYDWSAYMALIKMVHSMGLKVQAVMSFHACGGNVGDSCLVSLPYWVLQEAEKNPEVLYTDQNG-----NRNGEYLSLGVDCLP-LFEGRSPVQIYHDFMESFRDTFHQYLGD-CIVEVAVGMGPAGELRYPSYPEGDGRWRFPGIGEF-------QCYDKYMMANLRACAAAVGRPEWGLRGPHN-SGNYNNWPDETGFFNQ-HSGAYMNEYGDFFLSWYAENLAAHGDRVLGAAAAVFQ-GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GVVLAGKLAGVHWWNRHPSHAAELTAGYYSCRGKNLVRKEGYERIVRVFAKH-EAVLNFTCVEMADNEQ---PPEAMCSPERLLLKVRQTAARYGVPVSGENALPRYDLSAH-----RMIKHNVHRKDM----------------RNLPRMVAFTFLRMGESLFQTDHWRLFVEFVRNMDK--RE-LLEDPKK---P--R-K-EGQHGVPHSVDVRK----------------------------------------------------NTQVL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QMQ---L"/>
+                            
+        <sequence id="seq_KAH7283555.1_hypothetical_protein_KP509_34G013300_Ceratopteris_richardii" spec="Sequence" taxon="KAH7283555.1_hypothetical_protein_KP509_34G013300_Ceratopteris_richardii" totalcount="20" value="------MMVCVR-LPEA---------------------------------------------AEMVR-FWLPGATARAKF---LRSSM----------------------------------------------WRICLAFCWTSKQQRQSNHARIISRRSQLPFHQ----------KK----------KKHGARHF------CRR-GFSVRGLVEA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TK--RQPR--SIVDV---------------CLP---------C-----------------------------------------------------------------------------------------------------SPSLFEDGD------------------------------------------------------------------------------------------------------------------------------------LFLQQKV-H-------RDSRSVIRRGPEAG-VPVYVM-------LPLDSINPHNNTI--NRRRAMDASLLALK-SAGVEGVMLDVWWGR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------"/>
+                            
+        <sequence id="seq_KAJ0630873.1_putative_beta-amylase_Helianthus_annuus" spec="Sequence" taxon="KAJ0630873.1_putative_beta-amylase_Helianthus_annuus" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALTLRSSTS-FISSKDIKT-LK------------------------SL-E-DFP-GTVCFAHIKPT------PR--RLRAKNSLQDAHITREK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ITSPFEGMFDEQ------------------------------------------------------------------------------------------------------------------------------KEKFHALS-S------------S-HHTKNDSRVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-SAGVEGVMVDVWWGLVEKDGPMKYNWEGYVELVNMVQKHGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISGNPDVVYTDRSG-----RRNPEYISLGCDSL-PVLRGRTPIQVYSDYMRSFQQKFKNYLGN-VIVEIQVGLGPCGELRYPSYPESNGTWRFPGIGEF-------QCYDKYMKASLEAAAEATGQKDWGKSGPHD-SGHYNQFPEDTGFFKR-D-GTWDTEYGRFFMQWYSGKLVQHGDRILNSANAIFT-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKLSAKVAGIHWHYKTRSHAAELTAGYYNTRN-----SDGYLPIARMLAKH-DAVLNFTCMEMRDHEQ---PQHAECSPEGLVRQVKMAVQAAGVELAGENALERYDGAAY-----KQVQETSR-------------------SDSGNGLCAFTFLRMNKRLFEAENWRELVNFVRSMS--EGGRV-RL-PE--R-----TDL----Y----VRFVDDK-----------------------------KM------------KGSL--KGDKE-----VV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L--V---"/>
+                            
+        <sequence id="seq_NP_001352477.1_Beta-amylase_3_chloroplastic_Zea_mays" spec="Sequence" taxon="NP_001352477.1_Beta-amylase_3_chloroplastic_Zea_mays" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALTLRSSTS-FLSHVDPAS-KL-----------------------LHKPTDEAP--PCCVS-VPPA------PSR-RPRALRAAAATATAPSP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATHRAPAEA------------------------------------------------------------------------------------------------------------------------------AELLHGGG-A------G-----Q-QHGLPRGGVPVYVM-------LPLDTVGPG-GQL--SRQRAVAASLMALR-GAGVEGVMVDVWWGVVEREGPGRYDWEAYAELVRMVERAGLRLQAVMSFHQCGGNVGDTCNIPLPPWVLEEMSSNPNIVYTDRSG-----RRNPEYISLGCDTL-PVLRGRTPIQVYTDYMRSFRQRFRDYLGN-VIAEIQVGMGPCGELRYPSYPEANGTWRFPGIGEF-------QCYDKYMRASLEAAAVASGHEEWGRGGPHD-AGEYKQMPDDTGFFRR-E-GTWSTEYGHFFLEWYSGMLLEHGDRVMDAAEAVFG-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATLSAKVAGIHWHYRTRSHAAELTAGYYNTRG-----RDGYAPIARMLAKR-GAVLNFTCMEMKDEQQ---PQHASCSPELLVQQVKAATSAAGVQLAGENALERYDDAAF-----SQVVSTAR----------------------GAGLAAFTYLRMNKTLFDGDNWGRFVSFVRAMA--DGGARPAL-PR--C---D-T-GHSDLY----VGFVDAA-------------------------------------------KERKAAEAKGA--AT-TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--L---"/>
+                            
+        <sequence id="seq_NP_189034.1_beta-amylase_1_Arabidopsis_thaliana" spec="Sequence" taxon="NP_189034.1_beta-amylase_1_Arabidopsis_thaliana" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALNLSHQLGVLAGTPIKSGEMT-----------------------DSSLLS-IS-PPSARMMTPKA------MNR-NYKAHGTDPSPPMSPILGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAD---------------------------------------------------------------------------------------------------LSVACKAFAVENGI------------------------------------------------------------------------------------------------------------------------------GTIEEQRT-Y------R-EGGIG-GKKEGGGGVPVFVM-------MPLDSVTM-GNTV--NRRKAMKASLQALK-SAGVEGIMIDVWWGLVEKESPGTYNWGGYNELLELAKKLGLKVQAVMSFHQCGGNVGDSVTIPLPQWVVEEVDKDPDLAYTDQWG-----RRNHEYISLGADTL-PVLKGRTPVQCYADFMRAFRDNFKHLLGE-TIVEIQVGMGPAGELRYPSYPEQEGTWKFPGIGAF-------QCYDKYSLSSLKAAAETYGKPEWGSTGPTD-AGHYNNWPEDTQFFKK-EGGGWNSEYGDFFLSWYSQMLLDHGERILSSAKSIFE-NM-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VKISVKIAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPIAQMLARH-NAIFNFTCIEMRDHEQ---PQDALCAPEKLVNQVALATLAAEVPLAGENALPRYDDYAH-----EQILKASALNLDQNNE------------GEPREMCAFTYLRMNPELFQADNWGKFVAFVKKMG-E-GRDSHRC-RE--E---V-E-REAEHF----VHVTQPL-----------------------------V--------------------QEAA-----VA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-TH---"/>
+                            
+        <sequence id="seq_OAE23062.1_hypothetical_protein_AXG93_3509s1060_Marchantia_polymorpha_subsp._ruderalis" spec="Sequence" taxon="OAE23062.1_hypothetical_protein_AXG93_3509s1060_Marchantia_polymorpha_subsp._ruderalis" totalcount="20" value="------MMNIM----------------------------------------------EQHLEHLDSLDQL--DTETGSDS-DMLALTPAQSGQERKSR---------------------------------------------------------------------------------------------------------------RGGRPRSLVWQHFIVSGERTDK------SRR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FNVCCKS--CGIDMVSRLGTMEKHI-----------A------FECEKADPDG--R-V--------------------------------------------------------------------------------------------------KIQERLAVKSAQIIG-------------------------------------------------------------------------------------------------------------------HAAKRVKKEGRRKLFEV-H--------ERDFE-RDFAGTTYIPIYVM-------LPLNTIDEN-NEV--SDPEFLKYDLRALK-SVNVDGVMVDCWWGLVEGKAPQHYNWNGYRQLFNIVREAGLKLQVVMSFHQCGGNVGDDTNIPIPSWVLDIGEKNPDIFFTDRQG-----VRNPECLSWGVDKE-RVLAGRTGLEIYYDFMRSFRSQFDEFFEDGTITEIEVGLGACGELRYPSYPERHG-WKYPGIGEF-------QVYDKYLQKSLTKAAVQRGHGDWAR-APDN-AGEYNSRPQDTGFFRD-G-GDYDSYYGRFFLKWYSQVLIEHGDNVLTLANLAFE-GY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIAAKVSGIHWWYKTASHAAELAAGFYNPSN-----RDGYAPIAEMLAKH-KAALNFTCVELRTSSQEEGHPEAMADPEGLVWQVLNAAWDSNISVASENALPCYDRDGY-----NKILENAKPLKD------------P----DGRHLVAFTYLRLNPTLMEDSNLDEFALFVKRLH-G-KQTHFS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S"/>
+                            
+        <sequence id="seq_PRW56984.1_Beta-amylase_chloroplastic_isoform_A_Chlorella_sorokiniana" spec="Sequence" taxon="PRW56984.1_Beta-amylase_chloroplastic_isoform_A_Chlorella_sorokiniana" totalcount="20" value="---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ML-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRIYQA------------------S----------------------------------DA--RM-A------P-ARQRARITAPV-RGVPVYVMLPLDTVWLLERDGATQ-PLL-I-REKAMEVGLEMLS-RAGVDGVMIDVWWGIAEHAGPGHYDFSAYRKLFEQVASKGLKVQAVMSFHAAGNNVGDCCRISLPRWVVEAGEADPDIFFTDSSG-----YRNRECLSIGADEQ-PVLAGRTPIQAQADFIAAFADEFGDMLG-GVITEVTVGMGPAGELRYPSYPEGDGRWRFPGIGQF-------QCYDKYMLASLREAALAAGHPEWGHGGPHD-SGSYNSHSSETGFFKSYG-GSWDTEYGRFFLNWYSGLLNQHADRLLGAARQVLS-AR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CR-------------PRTMREARELSDG-----------------------------------------------GMLYVF-EPAVQLGIKLAGVHWWFKSRAHAAELTAGYYNTRE-----RNGYLPIFEMLKRH-GATASFTCVEMRDCEH---PIEGRCSPEGLLNQVLSTAARVGVPMSGENALQRYDQWAF-----DKICDSAFG-----------------QSVMAGRLEKLTFLRMGDMMI-D-NWSAFGAFLQRLT-C-PP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S"/>
+                            
+        <sequence id="seq_PTQ29109.1_hypothetical_protein_MARPO_0147s0005_Marchantia_polymorpha" spec="Sequence" taxon="PTQ29109.1_hypothetical_protein_MARPO_0147s0005_Marchantia_polymorpha" totalcount="20" value="------MA-VS----------------------------------------------LMSGIH-VGLNAQ--CARAASAP-ACQANADADAARKVSEL---------------------------------------------------------------------------------------------------------------RLGGFRLNKWQGLKCDGRARRD------ALL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPISSNS--R--------RDSPRMI-----------R------AEAAQQEGDV--A-V--------------------------------------------------------------------------------------------------RTQELTVEKPVES------------------------------------------------------------------------------------------------------------------------------TEDDQVKV-H--------ERDFE-RDFAGTTYIPIYVM-------LPLNTIDEN-NEV--SDPEFLKYDLRALK-SVNVDGVMVDCWWGLVEGKAPQHYNWNGYRQLFNIVREAGLKLQVVMSFHQCGGNVGDDTNIPIPSWVLDIGEKNPDIFFTDRQG-----VRNPECLSWGVDKE-RVLAGRTGLEIYYDFMRSFRSQFDEFFEDGTITEIEVGLGACGELRYPSYPERHG-WKYPGIGEF-------QVYDKYLQKSLTKAAVQRGHGDWAR-APDN-AGEYNSRPQDTGFFRD-G-GDYDSYYGRFFLKWYSQVLIEHGDNVLTLANLAFE-GY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIAAKVSGIHWWYKTASHAAELAAGFYNPSN-----RDGYAPIAEMLAKH-KAALNFTCVELRTSSQEEGHPEAMADPEGLVWQVLNAAWDSNISVASENALPCYDRDGY-----NKILENAKPLKD------------P----DGRHLVAFTYLRLNPTLMEDSNLDEFALFVKRLH-G-ESI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H"/>
+                            
+        <sequence id="seq_XP_001691372.1_uncharacterized_protein_CHLRE_06g307150v5_Chlamydomonas_reinhardtii" spec="Sequence" taxon="XP_001691372.1_uncharacterized_protein_CHLRE_06g307150v5_Chlamydomonas_reinhardtii" totalcount="20" value="------MPTS-------------------------------------------------LPQC-----------PS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APRSVQPLRSALLAAQRLSQC-------------RG-SRSQRGS-------GACHSQGR-------------------------Q-------------------------------------------------VTHPTAHPRTSR----------------------TLDDDSGF-----------A------SFAPEPIVTT----------------PGAS----------------------------------------------------------------------------------------------------------------------------------------------------------AFSEVEDDLQIHRLLRET-----GQHIK--IPMIDE----------------------------------DRFDTQ-Y------P-ESQAE-EPSSSGSGCPVYVMLPLDTVWVVERDGKRI-SVL-K-KERSLDIALHTLK-QAGVEGVMVDVWWGIVERAGPRQYDFSAYKRLFYKVAAAGLKVQAVMSFHAAGGNVGDTCKIPLPKWVLEIGERNPDIFYTDKAG-----HRNRECLSLGCDEV-PLFWGRTPVLMYRDFINAFADKFQHLFG-TVITEVTVGLGPAGELRYPSYPEGDGRWRFPGVGEF-------QCYDKFMLESLRRTAEAAGHAEWGLSGPHD-AGHYNSSSWETGFFVSQN-GSWNTAYGHFFLSWYSNMLLEHADRVLSSAAEVLN-KH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GR-------------PRVFNSMRDASNG-----------------------------------------------HVIYEF-TPACKMGIKLAGVHWWFKSRAHAAELTAGYYNTRD-----RDGYLPFMAMLRRH-DASLSFTCVEMRDCEH---PPEGRCSPQALLQQVIEAAEKYGVPLSGENALQRYDDYAF-----ERIAESAFG-----------------RNARAGRLTQVTFLRMGDLMF-D-NWDAFSRFLNRMR-N-K----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A"/>
+                            
+        <sequence id="seq_XP_002968794.2_beta-amylase_1_chloroplastic_Selaginella_moellendorffii" spec="Sequence" taxon="XP_002968794.2_beta-amylase_1_chloroplastic_Selaginella_moellendorffii" totalcount="20" value="------MSSSS-------------------------------------------------------------------------------------------------------------IVGRGRALFPESE--PSTSASVWNPDFSTTRVS-----------------------CSTLAR-RS-IICHMASPPAE------EWW-KQQPQQHRSSSPISCFP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SQVASHG--PALA------PDFFEE-----------R--------PFELQ--HGIS---------------------------------------------------------------------------------------------------SPSPSGF----PSK------------------------------------------------------------------------------------------------------------------------------IAPPVEKE-H------S-AQETP-TSKGKRSGVPVYVM-------LPLDSINSGNNQV--NRARAMNASFQALK-SAGVEGVMVDVWWGIVEKDGPCNYNWSGYRELLEMAKKHGLKVQAVMSFHQCGGNVGDSAFIPLPWWVVEEAKNNPDMVYTDRYG-----NRNFEYLSLGCDHL-PVLKGRTPVQAYSDFMRSFKESFSDMLGD-VIVEIQVGMGPAGELRYPGYPERDGIWKFPGVGEF-------QCHDNYMLASLKASAESIGKPDWGC-APSD-AGHYNQWPEDSIFFKR-D-GGWNTDYGRFFLEWYSGKLIEHGESVLTAAEGIFR-GS-P----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRLSAKVAGIHWHYGTRSHAPELTAGYYNTRF-----RDGYLPLARMFGRH-GVTFNFTCFEMRDVEQ---PAAAQCSPEGLLKQVVAAAKSAGVPLAGENALPRYDEGAY-----HQIVMKSRLEVEGEES----------MERAYEPMCCFTFLRMNERLFHPENWRRFVQFVKEIG-D-GKGSSSS--R--E---H-E-HRASEL----LVATKPL-----------------------------I--------------------QEAA-----AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L--V---"/>
+                            
+        <sequence id="seq_XP_023758910.1_beta-amylase_3_chloroplastic_Lactuca_sativa" spec="Sequence" taxon="XP_023758910.1_beta-amylase_3_chloroplastic_Lactuca_sativa" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALTLRSSTF--LNLKDIKT-LK------------------------TLDV-DFV-TTICFAQIKPT------TR--RLRTRNSIQDAQLSREK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MISPFEGMYDAQ------------------------------------------------------------------------------------------------------------------------------KEKFHALS-S------------S-HQMQNDSKVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-NAGVEGVMVDVWWGLVEKDGSLKYNWEGYVELVNMVQKHGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISRNPDLVYTDRSG-----RRNPEYLSLGCDSL-PVLRGRTPIQVYSDFMRSFKQRFKNYLGN-VIVEIQVGMGPCGELRYPSYPESNGTWKFPGIGEF-------QCYDKYMRASLEAAADANGKKDWGNSGPHD-SGQYNQFPEDTGFFRR-E-GTWDTDYGRFFMEWYSGKLLEHGDKILGSADRIFR-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKLSGKVAGIHWHYKTRSHAAELTAGYYNTRH-----SDGYLPIAKMLAKY-DVVFNFTCMEMRDNEQ---PQHANCSPEGLVRQVKLAVKAAGIGLAGENALERYDGGAY-----AQVLTTSR-------------------SDSGNGLCAFTFLRLNKRLFEAENWRQLVNFVRSMS--EGGRV-RQ-PE--S---D-S-STTDLY----VRFVDNK-------------------------------------------LKSL--KEDKE-----AV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L--L---"/>
+                            
+        <sequence id="seq_XP_024357748.1_beta-amylase_2_chloroplastic-like_Physcomitrium_patens" spec="Sequence" taxon="XP_024357748.1_beta-amylase_2_chloroplastic-like_Physcomitrium_patens" totalcount="20" value="------MSIG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E-AEHAE-CPSPVTPYIPTYVM-------LPLSTISNE-NKV--ADPEKLKEDLDKLK-RASVDGVMIDCWWGIVEGVTPQVYDWSAYYDLFSMVRDCKLKLQAIMSFHQCGGNVGDDVFIPLPAWVLRVGKENPDIFFTNRAG-----VRNPESLTFGIDDE-AVLDSRTALEVYYDFMESFRKDMQEFLEDGTITEIEVGMGPCGELRYPSYPETQG-WKYPGTGEFQ-------CWDKYLLKNLKNAANEKEHPEWGV-GPAD-AGDYNCTPHNSAFFEE-G---RKSPYGEFFLDWYSRALIEHGDNLLTVARHALG-NT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLAVKVSGIHWWYKSASHAAELAAGYYNQAS-----KCGYTPIAKMLATH-DATLNFTCVELRTADETVKFPGALADPEGLVSQVLRAAWEQGVEVAAENALSFYEKSGY-----DQILVQAKP-K----D--------Y----TNHHLSAFTYLRLTPELMEEQNLEEFTQFVHKLH-G-AQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C"/>
+                            
+        <sequence id="seq_XP_024365489.1_beta-amylase_1_chloroplastic-like_Physcomitrium_patens" spec="Sequence" taxon="XP_024365489.1_beta-amylase_1_chloroplastic-like_Physcomitrium_patens" totalcount="20" value="-----------------------------------------------------------------------------------------------------------------------------MSSAMCRSATLANRFVCGNVLTDRLQSE-----------------------ASSSGR-VE-LARFSARRAVP------GVS-CSQRNQSDGHVAHTSSGSVS----S------FG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SLS-SEE--WWRK--NTGSAGDSTG-----------G--------LRATH--HTQM---------------------------------------------------------------------------------------------------DTMFPEHKSLLDWD------------------------------------------------------------------------------------------------------------------------------NTADEWKE-H------A-FHETP-TSRGVHGGVPVFVM-------LPLDSVNIN-NTL--KRRRALNASLLALK-SAGVEGVMMDVWWGIVEKEGPRNYNWSAYRELIDMVRKHGLKVQAVMSFHQCGGNVGDSCNIPLPPWVLEEVQKNPDLAYTDKAG-----KRNAEYISLGADNV-PALKGRTPVQCYADFMRSFRDNFKDLLGD-VIIEIQCGMGPAGELRYPSYPESEGRWRFPGIGEF-------QCYDKYMLASLKANAQALGKPAWGHGGPCD-AGNYNQWPDETGFFHR-D-GSWCSEYGQFFMEWYSEMILAHGERLLASASGIFK-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVISGKVAGIHWHYGTRSHAAELTAGYYNTRT-----RDGYATIAQMFAKY-GVTLNFTCIEMRDYEQ---PSQASCSPEGLVRQVALATRRAGIPMAGENALPRFDSSAH-----EQIVRKSRLRMNEHGD----------CHEEYEPMAAFTFLRMCESLFHSENWKLFVPFVRHME-E-GRTFQPW--E--E---E-H-HRTETH----VHATRPL-----------------------------V--------------------QEAA-----S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LM-Y---"/>
+                            
+        <sequence id="seq_XP_024517073.1_beta-amylase_2_chloroplastic_Selaginella_moellendorffii" spec="Sequence" taxon="XP_024517073.1_beta-amylase_2_chloroplastic_Selaginella_moellendorffii" totalcount="20" value="------MRQAL-----------------------------------------------LSQAAMDTRFLC--CPVALLPR-CHPKLAPAARSNHFVQA---------------------------------------------------------------------------------------------------------------ITARKVSNLASHKMVSRSSTSS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--A-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVEEMTKE----------EEKEE-RDFAGTPYVPIYVM-------LPLGLISES-NEL--VNPEGIRRDLQALK-SVNVDGVMVDCWWGLVE-DTPQKYNWCAYRELFTIVKESDLKLQVVMSFHQCGGNVGDDVNIPIPKWVLEIGKENPDIFFTDKHG-----HRNPECLTWGVDKE-RVLKSRTGLEVYFDYMRSFRQEFDDLFQSGVIAEIEVGLGACGELRYPSYVPRSG-WEYPGIGEFQ-------CYDKYLIKSLKQAAEARGHTEWGC-CPDN-AGEYNSKPQETDFFRD-G-GDYDSYYGRFFLKWYSKVLIEHGDRVLMLAKLAFE-GF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HIASKVSGIHWWYKTASHAAELAAGFYNPCN-----RDGYVEIAEMFAKH-DASLNFTCVELRTLAQEEDFPEALADPEGLVWQVLNAAWDAGIYVASENALPCYDRDGY-----NKILENAKPSKN------------P----DGRHISAFTYLRLSPVLMEEHNLQEFARFVKRLHG--EG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V"/>
+                            
+        <sequence id="seq_XP_025876615.1_beta-amylase_1_chloroplastic-like_Oryza_sativa_Japonica_Group" spec="Sequence" taxon="XP_025876615.1_beta-amylase_1_chloroplastic-like_Oryza_sativa_Japonica_Group" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALNLAQSAAAAACFATAG---------------------------DARRAA-SV-VAMPSSSSSAT------TSL-RMKRQAACE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P------VA-----------------------------------------------------------------------------------------------------------------------------------CRAVAR-----------HVAAA-AASSRRNGVPVFVM-------MPLDTVSKCGSAL--NRRKAVAASLAALK-SAGVEGIMVDVWWGIVESEGPGRYNFDGYVELMEMARKTGLKVQAVMSFHQCGGNVGDSVNIPLPRWVVEEMEKDNDLAYTDQWG-----RRNFEYISLGCDAM-PVFKGRTPVECYTDFMRAFRDHFASFLGD-TIVEIQVGMGPAGELRYPSYPESNGTWRFPGIGAF-------QCNDRYMRSSLKAAAEARGKPEWGHGGPTD-AGGYNNWPEDTVFFRG-DCGGWSTEYGEFFLSWYSQMLLEHGERVLSGATSVFGDGA-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKISVKVAGIHWHYGTRSHAPELTAGYYNTRH-----RDGYLPIARMLARH-GAVLNFTCVEMRDHEQ---PQEAQCMPEALVRQVAAAARAAGVGLAGENALPRYDGTAH-----DQVVAAAADR------------------AAEDRMVAFTYLRMGPDLFHPDNWRRFVAFVRRMS-E-SGSP----RE--A---A-E-SAAHGV----AQATGSL-----------------------------V--------------------HEAA-----VA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-RS---"/>
+                            
+        <sequence id="seq_XP_042923635.1_uncharacterized_protein_CHLRE_06g270350v5_Chlamydomonas_reinhardtii" spec="Sequence" taxon="XP_042923635.1_uncharacterized_protein_CHLRE_06g270350v5_Chlamydomonas_reinhardtii" totalcount="20" value="---------M---------------------------------------------------RASIDRQCC---AAASSPA-S---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARCPILGLLSRGQKRLGWRLGGHIASS--------------PHAEL--------------------------------------------------------------------------------------------------------------T----------------------SPTPVAA-----------G------ATARA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-APTWR-STVDEEAVLPLYTCLDGDILTPAN--------KF--AYYEALRSGLKALR-ALGINGISVDVYWGIVEGAAPMEYDWSSYKQLFALIRDEGFMAQVCLCFHGTEA-------VPLPAWVLAAGAANPDIYFTDRA-----GVRNTHCISLGVDEVP-ALDGRTALACYRDLMTSFRVELEPLLG-STIVDVCVGLGPDGELKYPAHPRDRR-WNFPGIGEF-------QCYDKYMLAGLRACSHQVSQPSWGLGGPHD-AGAYTVWPQQTGFFNQ-Y-GNWSSPYGKFFLQWYSDMLMQHADSVLGIARDVLL-PAD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSLSFSGSSAGFGSSSSSSSVRPGFYGNGYGNGNGIWRG---------------------------------------SPAAAAEPPR------------------------------------------------------------------------------------------------------------------------------------------------------LRLHAKLPGVHWWYNTASRAPELTAGFYNTTS-----RDGYLPIMEVLSRH-GISVRLRSAEMRSSEIA--PQQACCDPERQVAQQRTVAAALLVPVGLENAHERFD-----ESALARLEASLFDTSVH-------------EGIELPQVQSLVFNRMCDSMFEPGNWSRFKEFVRRVR-N-RADTLVV-PAWRWRGGP----GSSMD-----GMALPL-T-----------------------------------------VELP--M-GGE----PQQVS-AGSGSNVAMAAAAAAAAAAAAVAAGNGHG-----------------------------------------------SGA--------------------------------------------------------------TGAAGGGGDA------------------GMTAAAPT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSAGALQL----------------------------------V"/>
+                            
+        <sequence id="seq_XP_042928768.1_uncharacterized_protein_CHLRE_01g044100v5_Chlamydomonas_reinhardtii" spec="Sequence" taxon="XP_042928768.1_uncharacterized_protein_CHLRE_01g044100v5_Chlamydomonas_reinhardtii" totalcount="20" value="------MSSE---------------------------------------------------NILLDRALS---VQGPGYG-Y----------------------------------------------------------------------------------------------------------------------------------L---------------------------------------------------------------------------------------------------------HLGG---------VY----------GDCVATTALGYRAAA--------------PSMPAS-------ASVPS-----------------------------------F-----------------------------------------------------GQSGVLR-P----------------------HPRRYSQ-----------N------AFGTS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-S-PVH-GPSDGGTGANVYCMLPLDTVNSEG--------VFRYAGSAWFAQALQLLV-ASGAHGVAMDFWWGAVER-SPGQYNWSGYKQALEVIKQTGLKVQVVLSFHACGGNVGDTVQIPLPDWVVQCAEADPDLFFADRPRNGGLGNRNREYLSIWADDAPGVLRGRSPMQCYEEYMVSLRENFSQELG-TVIDEVVVGAGPCGELRLPSYVEANG-WRFPGAGEF-------QCYDRRALASLAQAAREAGHPEWGYTGPHD-AGEYNSTPEHTGFFSH-N-GSWNTPYGRFFLEWYSGCLLKHGDRLLTVANAVFA-SKLNPPPQPPQSLLQTLGAAGSALAAQLQQVAQQTVGSLGHGSSGGNAMGNGAGSGPSSSHGVQAFLSPMAPGGMNSYVTNTPFQPMSFMGLHTSQTSSGGPRMSTHSLNRILETGGSCGSRPGSGHASGNELTGSASADGGGMPPPPAPPLPRRQATEGMLSSCGVPSSISPCCTYSSMSTYTGTSSGGASGSTANMIMATAGSSGSLMSPRSMSVFHGTACGAPHSEAHGAVGAAAAAGTVLGGRRSSGGGAAGSPQNASGVFSAAMNAMVTRGVATAAALMQAAAAQGGAATSMAATNARAVAAACGSSSRTSSDSAAATNVGTTGAAALASGDATMIDVEPSDNSHTSTVAELMNAQGLSGSSNASGPLAHPLNAAAQPGTLAPTAVTAAASGAIVAAPGAGHASCHPSPLSGVRFRSSASTLADAEPMFGSGQGTAFAAVAAAGVIIASGHTARMDLCNSLSSLSTEFTTTGATNGAGNIASMHYLDVAASLVADGDDESDVGTSCCTAGAAEEADELFLGAGNSAGRTPHPSISEHAAALSLVPVAGRPLHHGQSAGTSSGSSGGGLQAQLQQLQPPHGARMAGIYSDDGRRSSAELSGMGLGVATLGVGMSTA------SAGTAVISGVGGVGGVAAAATNPVTALLSPTTSYHTAGTAPALATSSGGGAGAALYGATGMHLALKIAGIHWWYRSRSHAAELTAGYYNVDG-----HDGYEAIVNLCARH-RANLVLTCVEMCDSQHP---AQAQCGPEGLLRQLRQLAARAGVQLSGENALPIFSSGGVDNDALDRIVNNMRSWPMP-----------------NNNVNSRVGISPAPSMVMPSGNGNGNGNGNGNG-N-GAHASSG-GN-IVCVGY----RM------------SE-S--GRMV---------------------PV------------GTAA--SAVVN----ANGNG-SGNGNGYGLNGASGSQSAAESGSQINGQPTSAVTPHGSTDLNGAYSTCLSPAPPEVLPSLRAFTFLR---------LVP--------------------------------------------------------------EMLLPGYQSL------------------WMRFMGKL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LA----------------------------------------S"/>
+                            
+        <sequence id="seq_XP_043639661.1_beta-amylase_3_chloroplastic_Erigeron_canadensis" spec="Sequence" taxon="XP_043639661.1_beta-amylase_3_chloroplastic_Erigeron_canadensis" totalcount="20" value="----------------------------------------------------------------------------------------------------------------------------------MALTLRSSSTCFLNLKDIIKSST-------------PPPAAAALKTTTLHD-DFTATAVINNSIKPI------IL--RRRLIKSSMQSEINVQYN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LA-----P---------------------------PPQK--SI-----------------------------------------------------------------------------------------------------MMTSSPFEGTYEEQ------------------------------------------------------------------------------------------------------------------------------KEKFHALS-T------S-SRHDE-SQNGSSSRVPVYVM-------LPLDTVTLG-GHL--NKPKAMNASLMALK-GAGVEGIMVDVWWGLVEKDGPGKYNWEGYVELVNMVQRHGLKLQAVMSFHQCGGNVGDSCSIPLPPWVLEEISRNPDLVYTDKSG-----RRNPEYISLGCDSL-PVLRGRTPIQVYSDFMTSFQQRFKNYLGD-VVVEIQVGMGPCGELRYPSYPESNGTWRFPGIGEF-------QCYDKYMKASLEAAADANGEKNWGKSGPHD-SGQYNQFPEDTGFFKR-D-GTWDTDYGRFFMEWYSGKLLQHGDRILGSADSIFR-GT-G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKLSGKVAGIHWHYKTRSHAAELTAGYYNTRH-----SDGYLPIARMLAKH-DVVLNFTCMEMRDNEQ---PRHADCSPEGLVRQVKMAVKEARVDLAGENALERYDSGAY-----GQILKTSK-------------------SDSGNELCAFTYLRLNKRLFEAENWRELVNFVRSMS-SEGGKA-RL-PA--S---D-S-TRTDLY----VRFVDHK-------------------------------------------LKRL--KDDME-----IV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L--V---"/>
+                        
+    </data>
+        
+
+
+
+
+
+    
+
+
+
+
+
+    
+
+
+
+    <map name="Uniform" >beast.base.inference.distribution.Uniform</map>
+
+    
+
+    <map name="Exponential" >beast.base.inference.distribution.Exponential</map>
+
+    
+
+    <map name="LogNormal" >beast.base.inference.distribution.LogNormalDistributionModel</map>
+
+    
+
+    <map name="Normal" >beast.base.inference.distribution.Normal</map>
+
+    
+
+    <map name="Beta" >beast.base.inference.distribution.Beta</map>
+
+    
+
+    <map name="Gamma" >beast.base.inference.distribution.Gamma</map>
+
+    
+
+    <map name="LaplaceDistribution" >beast.base.inference.distribution.LaplaceDistribution</map>
+
+    
+
+    <map name="prior" >beast.base.inference.distribution.Prior</map>
+
+    
+
+    <map name="InverseGamma" >beast.base.inference.distribution.InverseGamma</map>
+
+    
+
+    <map name="OneOnX" >beast.base.inference.distribution.OneOnX</map>
+
+    
+
+    <run id="mcmc" spec="MCMC" chainLength="1000000">
+            
+        <state id="state" spec="State" storeEvery="5000">
+                    
+            <tree id="Tree.t:g41182_select" spec="beast.base.evolution.tree.Tree" name="stateNode">
+                            
+                <taxonset id="TaxonSet.g41182_select" spec="TaxonSet">
+                                    
+                    <alignment idref="g41182_select"/>
+                                
+                </taxonset>
+                        
+            </tree>
+                    
+            <parameter id="birthRate.t:g41182_select" spec="parameter.RealParameter" lower="0.0" name="stateNode">1.0</parameter>
+                
+        </state>
+            
+        <init id="RandomTree.t:g41182_select" spec="RandomTree" estimate="false" initial="@Tree.t:g41182_select" taxa="@g41182_select">
+                    
+            <populationModel id="ConstantPopulation0.t:g41182_select" spec="ConstantPopulation">
+                            
+                <parameter id="randomPopSize.t:g41182_select" spec="parameter.RealParameter" name="popSize">1.0</parameter>
+                        
+            </populationModel>
+                
+        </init>
+            
+        <distribution id="posterior" spec="CompoundDistribution">
+                    
+            <distribution id="prior" spec="CompoundDistribution">
+                            
+                <distribution id="YuleModel.t:g41182_select" spec="beast.base.evolution.speciation.YuleModel" birthDiffRate="@birthRate.t:g41182_select" tree="@Tree.t:g41182_select"/>
+                            
+                <prior id="YuleBirthRatePrior.t:g41182_select" name="distribution" x="@birthRate.t:g41182_select">
+                                    
+                    <Uniform id="Uniform.4" name="distr" upper="Infinity"/>
+                                
+                </prior>
+                        
+            </distribution>
+                    
+            <distribution id="likelihood" spec="CompoundDistribution" useThreads="true">
+                            
+                <distribution id="treeLikelihood.g41182_select" spec="ThreadedTreeLikelihood" data="@g41182_select" tree="@Tree.t:g41182_select">
+                                    
+                    <siteModel id="SiteModel.s:g41182_select" spec="SiteModel">
+                                            
+                        <parameter id="mutationRate.s:g41182_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="mutationRate">1.0</parameter>
+                                            
+                        <parameter id="gammaShape.s:g41182_select" spec="parameter.RealParameter" estimate="false" lower="0.1" name="shape">1.0</parameter>
+                                            
+                        <parameter id="proportionInvariant.s:g41182_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter>
+                                            
+                        <substModel id="Blosum62.s:g41182_select" spec="Blosum62"/>
+                                        
+                    </siteModel>
+                                    
+                    <branchRateModel id="StrictClock.c:g41182_select" spec="beast.base.evolution.branchratemodel.StrictClockModel">
+                                            
+                        <parameter id="clockRate.c:g41182_select" spec="parameter.RealParameter" estimate="false" lower="0.0" name="clock.rate">1.0</parameter>
+                                        
+                    </branchRateModel>
+                                
+                </distribution>
+                        
+            </distribution>
+                
+        </distribution>
+            
+        <operator id="YuleBirthRateScaler.t:g41182_select" spec="kernel.BactrianScaleOperator" parameter="@birthRate.t:g41182_select" upper="10.0" weight="3.0"/>
+            
+        <operator id="YuleModelTreeRootScaler.t:g41182_select" spec="kernel.BactrianScaleOperator" rootOnly="true" scaleFactor="0.5" tree="@Tree.t:g41182_select" upper="10.0" weight="3.0"/>
+            
+        <operator id="YuleModelUniformOperator.t:g41182_select" spec="kernel.BactrianNodeOperator" tree="@Tree.t:g41182_select" weight="30.0"/>
+            
+        <operator id="YuleModelSubtreeSlide.t:g41182_select" spec="kernel.BactrianSubtreeSlide" tree="@Tree.t:g41182_select" weight="15.0"/>
+            
+        <operator id="YuleModelNarrow.t:g41182_select" spec="Exchange" tree="@Tree.t:g41182_select" weight="0.0"/>
+            
+        <operator id="YuleModelWide.t:g41182_select" spec="Exchange" isNarrow="false" tree="@Tree.t:g41182_select" weight="3.0"/>
+            
+        <operator id="YuleModelWilsonBalding.t:g41182_select" spec="WilsonBalding" tree="@Tree.t:g41182_select" weight="3.0"/>
+            
+        <operator id="YuleModelBICEPSEpochTop.t:g41182_select" spec="EpochFlexOperator" scaleFactor="0.1" tree="@Tree.t:g41182_select" weight="2.0"/>
+            
+        <operator id="YuleModelBICEPSEpochAll.t:g41182_select" spec="EpochFlexOperator" fromOldestTipOnly="false" scaleFactor="0.1" tree="@Tree.t:g41182_select" weight="2.0"/>
+            
+        <operator id="YuleModelBICEPSTreeFlex.t:g41182_select" spec="TreeStretchOperator" scaleFactor="0.01" tree="@Tree.t:g41182_select" weight="2.0"/>
+            
+        <logger id="tracelog" spec="Logger" fileName="$(filebase).log" logEvery="1000" model="@posterior" sanitiseHeaders="true" sort="smart">
+                    
+            <log idref="posterior"/>
+                    
+            <log idref="likelihood"/>
+                    
+            <log idref="prior"/>
+                    
+            <log idref="treeLikelihood.g41182_select"/>
+                    
+            <log id="TreeHeight.t:g41182_select" spec="beast.base.evolution.tree.TreeStatLogger" tree="@Tree.t:g41182_select"/>
+                    
+            <log idref="YuleModel.t:g41182_select"/>
+                    
+            <log idref="birthRate.t:g41182_select"/>
+                
+        </logger>
+            
+        <logger id="screenlog" spec="Logger" logEvery="1000">
+                    
+            <log idref="posterior"/>
+                    
+            <log idref="likelihood"/>
+                    
+            <log idref="prior"/>
+                
+        </logger>
+            
+        <logger id="treelog.t:g41182_select" spec="Logger" fileName="$(filebase)-$(tree).trees" logEvery="1000" mode="tree">
+                    
+            <log id="TreeWithMetaDataLogger.t:g41182_select" spec="beast.base.evolution.TreeWithMetaDataLogger" tree="@Tree.t:g41182_select"/>
+                
+        </logger>
+            
+        <operatorschedule id="OperatorSchedule" spec="OperatorSchedule"/>
+        
+    </run>
+
+    
+
+</beast>