add different cwl use cases

workflows/ARCMount/FSharpArcCapsule.cwl

+cwlVersion: v1.2
+class: CommandLineTool
+hints:
+  DockerRequirement:
+    dockerPull: mcr.microsoft.com/dotnet/sdk:6.0
+requirements:
+  - class: InitialWorkDirRequirement
+    listing:
+      - entryname: arc
+        entry: $(inputs.arcDirectory)
+        writable: true
+  - class: EnvVarRequirement
+    envDef:
+      - envName: DOTNET_NOLOGO
+        envValue: "true"
+  - class: NetworkAccess
+    networkAccess: true
+baseCommand: [dotnet, fsi, "./arc/workflows/FSharpArcCapsule/script.fsx"]
+inputs:
+  arcDirectory:
+    type: Directory
+outputs:
+  output:
+    type: File
+    outputBinding:
+      glob: "./arc/runs/fsResult1/result.csv"
\ No newline at end of file

workflows/ARCMount/script.fsx

+#r "nuget: FSharp.Data, 5.0.2"
+
+open FSharp.Data
+open System.IO
+
+printfn "%A" (System.IO.Directory.GetCurrentDirectory())
+
+let data =
+    CsvFile
+        .Load(Path.Combine(System.IO.Directory.GetCurrentDirectory(),"./arc/assays/measurement1/dataset/table.csv"))
+        .Cache()
+        
+let r =
+    [
+        yield "Sum_1-2"
+        for row in data.Rows do
+            yield sprintf "%f"  ((row.["value_1"].AsFloat()) + (row.["value_2"].AsFloat()))
+    ]
+
+System.IO.File.WriteAllLines("./arc/runs/fsResult1/result.csv",r)
\ No newline at end of file

workflows/Devcontainer/FSharpArcCapsule.cwl

+cwlVersion: v1.2
+class: CommandLineTool
+hints:
+  DockerRequirement:
+    dockerImageId: "devcontainer"
+    dockerFile: {$include: "FSharpArcCapsule/Dockerfile"}
+requirements:
+  - class: InitialWorkDirRequirement
+    listing:
+      - entryname: arc
+        entry: $(inputs.arcDirectory)
+        writable: true
+  - class: EnvVarRequirement
+    envDef:
+      - envName: DOTNET_NOLOGO
+        envValue: "true"
+  - class: NetworkAccess
+    networkAccess: true
+baseCommand: [dotnet, fsi, "./arc/workflows/Devcontainer/FSharpArcCapsule/script.fsx"]
+inputs:
+  arcDirectory:
+    type: Directory
+outputs:
+  output:
+    type: File
+    outputBinding:
+      glob: "./arc/runs/fsResult1/result.csv"
\ No newline at end of file

workflows/Devcontainer/FSharpArcCapsule/.config/dotnet-tools.json

+{
+  "version": 1,
+  "isRoot": true,
+  "tools": {}
+}
\ No newline at end of file

workflows/Devcontainer/FSharpArcCapsule/.devcontainer/devcontainer.json

+{
+    "name": "F#ARC-Capsule",
+    "dockerFile": "../Dockerfile",
+    "appPort": [8080],
+    "extensions": [
+        "ionide.ionide-fsharp",
+        "ms-vscode.csharp",
+        "editorconfig.editorconfig",        
+        "ionide.ionide-paket",
+        "ionide.ionide-fake"
+    ],
+    "mounts": [
+        "source=${localWorkspaceFolder}/../../,target=/arc,type=bind,consistency=cached"
+      ]
+} 
\ No newline at end of file

workflows/Devcontainer/FSharpArcCapsule/.devcontainer/settings.vscode.json

+{
+    "FSharp.fsacRuntime":"netcore"
+}
\ No newline at end of file

workflows/Devcontainer/FSharpArcCapsule/Dockerfile

+#FROM rocker/r-ver:3.4.4
+FROM mcr.microsoft.com/dotnet/sdk:6.0
+#FROM r-base
+# Copy endpoint specific user settings into container to specify
+# .NET Core should be used as the runtime.
+COPY *.devcontainer/settings.vscode.json /root/.vscode-remote/data/Machine/settings.json
+
+# Install git, process tools
+RUN apt-get update && apt-get -y install git procps
+

workflows/Devcontainer/FSharpArcCapsule/script.fsx

+#r "nuget: FSharp.Data, 5.0.2"
+
+open FSharp.Data
+open System.IO
+
+printfn "%A" (System.IO.Directory.GetCurrentDirectory())
+
+let data =
+    CsvFile
+        .Load(Path.Combine(System.IO.Directory.GetCurrentDirectory(),"./arc/assays/measurement1/dataset/table.csv"))
+        .Cache()
+        
+let r =
+    [
+        yield "Sum_1-2"
+        for row in data.Rows do
+            yield sprintf "%f"  ((row.["value_1"].AsFloat()) + (row.["value_2"].AsFloat()))
+    ]
+
+System.IO.File.WriteAllLines("./arc/runs/fsResult1/result.csv",r)
\ No newline at end of file

workflows/FixedScript/FSharpArcCapsule.cwl

+cwlVersion: v1.2
+class: CommandLineTool
+hints:
+  DockerRequirement:
+    dockerPull: mcr.microsoft.com/dotnet/sdk:6.0
+requirements:
+  - class: InitialWorkDirRequirement
+    listing:
+      - entryname: script.fsx
+        entry:
+          $include: script.fsx
+  - class: EnvVarRequirement
+    envDef:
+      - envName: DOTNET_NOLOGO
+        envValue: "true"
+  - class: NetworkAccess
+    networkAccess: true
+baseCommand: [dotnet, fsi, script.fsx]
+inputs:
+  firstArg:
+    type: File
+    inputBinding:
+      position: 1
+  secondArg:
+    type: string
+    inputBinding:
+      position: 2
+
+outputs:
+  output:
+    type: File
+    outputBinding:
+      glob: "*.csv"
\ No newline at end of file

workflows/FixedScript/script.fsx

+#r "nuget: FSharp.Data, 5.0.2"
+
+open FSharp.Data
+open System.IO
+
+let args : string array = fsi.CommandLineArgs |> Array.tail
+let first = args.[0]
+let second = args.[1]
+
+let data =
+    CsvFile
+        .Load(first)
+        .Cache()
+        
+let r =
+    [
+        yield "Sum_1-2"
+        for row in data.Rows do
+            yield sprintf "%f"  ((row.["value_1"].AsFloat()) + (row.["value_2"].AsFloat()))
+    ]
+
+System.IO.File.WriteAllLines(second,r)
\ No newline at end of file