.arc/roc-metadata-fixed-script.json

+{ "@context": "https://w3id.org/ro/crate/1.1/context",
+  "@graph": [
+    {
+      "@type": "CreativeWork",
+      "@id": "ro-crate-metadata.json",
+      "conformsTo": { "@id": "https://w3id.org/ro/crate/1.1" },
+      "about": { "@id": "./" }
+    },
+    {
+      "@id": "./workflows",
+      "@type": "Dataset",
+      "hasPart": [
+        { "@id": "workflows/workflow.cwl" }
+      ]
+    },
+    {
+      "@id": "workflows/workflow.cwl",
+      "@type": [ "File", "SoftwareSourceCode", "ComputationalWorkflow" ],
+      "conformsTo": { "@id": "https://bioschemas.org/profiles/ComputationalWorkflow/0.5-DRAFT-2020_07_21/" },
+      "name": "Column Addition",
+      "programmingLanguage": [
+        { "@id": "#FSharp" },
+        { "@id": "https://w3id.org/workflowhub/workflow-ro-crate#cwl" }
+      ],
+      "creator": { "@id": "#timo" },
+      "dateCreated": "2024-02-05",
+      "input": [
+        { "@id": "#1" },
+        { "@id": "#2" }
+      ],
+      "output": [
+        { "@id": "#3" }
+      ]
+    },
+    {
+      "@id": "#1",
+      "@type": "FormalParameter",
+      "conformsTo": { "@id": "https://bioschemas.org/profiles/FormalParameter/0.1-DRAFT-2020_07_21/" },
+      "name": "intensity_table",
+      "valueRequired": true,
+      "additionalType": { "@id": "http://edamontology.org/data_2976" },
+      "format": { "@id": "http://edamontology.org/format_3752" }
+    },
+    {
+      "@id": "#2",
+      "@type": "FormalParameter",
+      "conformsTo": { "@id": "https://bioschemas.org/profiles/FormalParameter/0.1-DRAFT-2020_07_21/" },
+      "name": "file_name"
+    },
+    {
+      "@id": "#3",
+      "@type": "FormalParameter",
+      "conformsTo": { "@id": "https://bioschemas.org/profiles/FormalParameter/0.1-DRAFT-2020_07_21/" },
+      "name": "summed_intensities",
+      "additionalType": { "@id": "http://edamontology.org/data_2976" },
+      "encodingFormat": { "@id": "http://edamontology.org/format_3475" }
+    },
+    {
+      "@id": "https://w3id.org/workflowhub/workflow-ro-crate#cwl",
+      "@type": "computerlanguage",
+      "name": "common workflow language",
+      "alternatename": "cwl",
+      "identifier": {
+        "@id": "https://w3id.org/cwl/v1.2/"
+      },
+      "url": {
+        "@id": "https://www.commonwl.org/"
+      }
+    },
+    {
+      "@id": "#FSharp",
+      "@type": "ProgrammingLanguage",
+      "name": "F Sharp",
+      "alternateName": "F#",
+      "url": "https://dotnet.microsoft.com/en-us/languages/fsharp",
+      "version": "6.0"
+    },
+    {
+      "@id": "#timo",
+      "@type": "Person",
+      "name": "Timo Mühlhaus"
+    },
+    {
+      "@id": "http://edamontology.org/format_3752",
+      "@type": "Thing",
+      "name": "Comma-separated values"
+    },
+    {
+      "@id": "http://edamontology.org/format_3475",
+      "@type": "Thing",
+      "name": "Tab-separated values"
+    },
+    {
+      "@id": "./arc/runs",
+      "@type": "Dataset",
+      "hasPart": [
+        { "@id": "runs" }
+      ]
+    },
+    {
+      "@id": "runs",
+      "@type": [ "File", "SoftwareSourceCode", "ComputationalWorkflow" ],
+      "conformsTo": { "@id": "https://bioschemas.org/profiles/ComputationalWorkflow/0.5-DRAFT-2020_07_21/" },
+      "name": "Column Addition",
+      "programmingLanguage": [
+        { "@id": "https://w3id.org/workflowhub/workflow-ro-crate#cwl" }
+      ],
+      "creator": { "@id": "#timo" },
+      "dateCreated": "2024-02-05",
+      "about": [
+        {
+          "@id": "#Process_script.fsx",
+          "@type": [
+            "Process"
+          ],
+          "name": "script.fsx",
+          "parameterValues": [
+            {
+              "@id": "ARCtrl.Json.PropertyValue+ROCrate+genID@16[ARCtrl.Process.ProcessParameterValue]/{Name = \"Data Transformation\"}Some(Ontology\n  {Name = \"Addition\"; TSR = \"NCIT\"; TAN = \"http://purl.obolibrary.org/obo/NCIT_C64911\"})",
+              "@type": "PropertyValue",
+              "additionalType": "ProcessParameterValue",
+              "category": "Data Transformation",
+              "value": "Addition",
+              "valueCode": "http://purl.obolibrary.org/obo/NCIT_C64911",
+              "@context": {
+                "sdo": "http://schema.org/",
+                "additionalType": "sdo:additionalType",
+                "category": "sdo:name",
+                "categoryCode": "sdo:propertyID",
+                "value": "sdo:value",
+                "valueCode": "sdo:valueReference",
+                "unit": "sdo:unitText",
+                "unitCode": "sdo:unitCode",
+                "comments": "sdo:disambiguatingDescription"
+              }
+            }
+          ],
+          "inputs": [
+            {
+              "@id": "./arc/assays/measurement1/dataset/table.csv",
+              "@type": [
+                "Data"
+              ],
+              "name": "./arc/assays/measurement1/dataset/table.csv",
+              "type": "Raw Data File",
+              "@context": {
+                "sdo": "http://schema.org/",
+                "Data": "sdo:MediaObject",
+                "type": "sdo:disambiguatingDescription",
+                "name": "sdo:name",
+                "comments": "sdo:comment"
+              }
+            }
+          ],
+          "outputs": [
+            {
+              "@id": "./arc/runs/fsResult1/result.csv",
+              "@type": [
+                "Data"
+              ],
+              "name": "./arc/runs/fsResult1/result.csv",
+              "type": "Derived Data File",
+              "@context": {
+                "sdo": "http://schema.org/",
+                "Data": "sdo:MediaObject",
+                "type": "sdo:disambiguatingDescription",
+                "name": "sdo:name",
+                "comments": "sdo:comment"
+              }
+            }
+          ],
+          "@context": {
+            "sdo": "http://schema.org/",
+            "bio": "https://bioschemas.org/",
+            "Process": "bio:LabProcess",
+            "name": "sdo:name",
+            "executesProtocol": "bio:executesLabProtocol",
+            "parameterValues": "bio:parameterValue",
+            "performer": "sdo:agent",
+            "date": "sdo:endTime",
+            "inputs": "sdo:object",
+            "outputs": "sdo:result",
+            "comments": "sdo:disambiguatingDescription"
+          }
+        }
+      ]
+    }
+  ]
+}