.gitignore

01Minimal.study.xlsx

assays/assay1/dataset/minimal1.mzlite

assays/assay1/dataset/minimal2.mzlite

assays/assay1/dataset/minimal3.mzlite

assays/assay1/dataset/minimal4.mzlite

assays/assay1/isa.assay.xlsx

externals/example.fasta

isa.investigation.xlsx

runs/run1/db/Minimal.db

runs/run1/db/PeptideDB_Minimal_log.txt

runs/run1/db/PeptideDB_log.txt

runs/run1/db/peptideDBParams.json

runs/run1/isa.run.xlsx

runs/run1/mzlite/preprocessingParams.json

runs/run1/prot/ProteinInferenceParams.json

...1/prot/ProteinInference_createClassItemCollection_log.txt

runs/run1/prot/ProteinInference_inferProteins_log.txt

runs/run1/prot/ProteinInference_log.txt

runs/run1/prot/ProteinInference_readAndInferFile_log.txt