completed RNAseq pipeline
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- .gitattributes 2 additions, 0 deletions.gitattributes
- .gitignore 4 additions, 0 deletions.gitignore
- assays/canal-1_Transcriptomics/dataset/LHC_proteins_Umate_2010.txt 3 additions, 0 deletions...nal-1_Transcriptomics/dataset/LHC_proteins_Umate_2010.txt
- assays/canal-1_Transcriptomics/dataset/Sly_proteome_UP000004994.xlsx 3 additions, 0 deletions...l-1_Transcriptomics/dataset/Sly_proteome_UP000004994.xlsx
- assays/canal-1_Transcriptomics/dataset/photosystem_candidate_genes.csv 3 additions, 0 deletions...1_Transcriptomics/dataset/photosystem_candidate_genes.csv
- canal-1 ARC.Rproj 13 additions, 0 deletionscanal-1 ARC.Rproj
- runs/Orthofinder_Ath_Sly_Stu_Lja_Osa_Zma/230331_Genetree.R 21 additions, 0 deletionsruns/Orthofinder_Ath_Sly_Stu_Lja_Osa_Zma/230331_Genetree.R
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- runs/Orthofinder_Ath_Sly_Stu_Lja_Osa_Zma/OrthoFinder_source/220804_OrthoFinder_run.txt 156 additions, 0 deletions...Lja_Osa_Zma/OrthoFinder_source/220804_OrthoFinder_run.txt
- runs/Orthofinder_Ath_Sly_Stu_Lja_Osa_Zma/OrthoFinder_source/ExampleData/Mycoplasma_agalactiae.faa 5438 additions, 0 deletions.../OrthoFinder_source/ExampleData/Mycoplasma_agalactiae.faa
- runs/Orthofinder_Ath_Sly_Stu_Lja_Osa_Zma/OrthoFinder_source/ExampleData/Mycoplasma_gallisepticum.faa 5394 additions, 0 deletions...thoFinder_source/ExampleData/Mycoplasma_gallisepticum.faa
- runs/Orthofinder_Ath_Sly_Stu_Lja_Osa_Zma/OrthoFinder_source/ExampleData/Mycoplasma_genitalium.faa 3211 additions, 0 deletions.../OrthoFinder_source/ExampleData/Mycoplasma_genitalium.faa
- runs/Orthofinder_Ath_Sly_Stu_Lja_Osa_Zma/OrthoFinder_source/ExampleData/Mycoplasma_hyopneumoniae.faa 4764 additions, 0 deletions...thoFinder_source/ExampleData/Mycoplasma_hyopneumoniae.faa
- runs/Orthofinder_Ath_Sly_Stu_Lja_Osa_Zma/OrthoFinder_source/License.md 674 additions, 0 deletions...der_Ath_Sly_Stu_Lja_Osa_Zma/OrthoFinder_source/License.md
- runs/Orthofinder_Ath_Sly_Stu_Lja_Osa_Zma/OrthoFinder_source/OrthoFinder-manual.pdf 0 additions, 0 deletions...Stu_Lja_Osa_Zma/OrthoFinder_source/OrthoFinder-manual.pdf
- runs/Orthofinder_Ath_Sly_Stu_Lja_Osa_Zma/OrthoFinder_source/README.md 410 additions, 0 deletions...nder_Ath_Sly_Stu_Lja_Osa_Zma/OrthoFinder_source/README.md
- runs/Orthofinder_Ath_Sly_Stu_Lja_Osa_Zma/OrthoFinder_source/orthofinder.py 7 additions, 0 deletions...Ath_Sly_Stu_Lja_Osa_Zma/OrthoFinder_source/orthofinder.py
- runs/Orthofinder_Ath_Sly_Stu_Lja_Osa_Zma/OrthoFinder_source/scripts_of/__init__.py 0 additions, 0 deletions...Stu_Lja_Osa_Zma/OrthoFinder_source/scripts_of/__init__.py
- runs/Orthofinder_Ath_Sly_Stu_Lja_Osa_Zma/OrthoFinder_source/scripts_of/__init__.pyc 0 additions, 0 deletions...tu_Lja_Osa_Zma/OrthoFinder_source/scripts_of/__init__.pyc
- runs/Orthofinder_Ath_Sly_Stu_Lja_Osa_Zma/OrthoFinder_source/scripts_of/__main__.py 1815 additions, 0 deletions...Stu_Lja_Osa_Zma/OrthoFinder_source/scripts_of/__main__.py
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