- Nov 20, 2023
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andreaschrader authored
Manually switched all Term Accession Number and Term Source REF from all isa entries from study and assays as these seem to remain being switched. Also corrected these in assay and study is files. This was a bug in the arccommander where the respective flags were changed and arguments passed via these were inserted in the opposing field, respectively for studies and assays. Also added manually the ontology source references of the ontologies from the study and assay part as these currently (v0.5.0 used fort this ARC) can not be passed via arccommander.
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- Nov 14, 2023
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andreaschrader authored
Manually reverted all ORCID changes in the isa.investiagtion file as these were not the reason why the pipeline failed at the validation step.
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andreaschrader authored
Removed the lowest line for ORCID (comment) as well as this was added by arccommander v0.5.0 for the study and a row already existed with the same name for the investigation.
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andreaschrader authored
ORCID manual fix: copied orcid for assay performer to investigation person orcid comment and removed worksheet comment in which the assay performer orcid was previously inserted by arc commander. Aim: get validation pipeline running and show quality badge.
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andreaschrader authored
ORCID manual fix: copied orcid for assay performer to investigation person orcid comment and removed worksheet comment in which the assay performer orcid was previously inserted by arc commander. Aim: get validation pipeline running and show quality badge.
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- Aug 31, 2023
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andreaschrader authored
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- Aug 30, 2023
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andreaschrader authored
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andreaschrader authored
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andreaschrader authored
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andreaschrader authored
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andreaschrader authored
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andreaschrader authored
Added a study and assay(s) with measurement type, technology type and technology platform information.
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andreaschrader authored
Initiated an ARC, added investiagtion metadata, and added manually the ontology source reference information as no option is available for this so far.
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