workflows/BSA/RNAseq/QC.sh

workflows/BSA/RNAseq/adapter_trimming.sh

workflows/BSA/RNAseq/index_STAR.sh

workflows/BSA/RNAseq/run_STAR.sh

workflows/BSA/RNAseq/run_kallisto.sh

workflows/BSA/WGS/combined_filter.sh

workflows/BSA/WGS/map_reads.sh

workflows/BSA/betalain_quantification.Rmd

workflows/BSA/bsa_and_plotting.R

workflows/BSA/read_count_analysis.Rmd

workflows/BSA/read_count_analysis_from_bam.Rmd

workflows/BSA/readme.txt

workflows/BSA/snpEff_analysis.Rmd

workflows/annotation_analysis/R2R3_analysis_reannotation.Rmd

...otation_analysis/betalain_and_flavonoid_identification.sh

...ws/annotation_analysis/betalain_phylogenetic_analysis.Rmd

workflows/annotation_analysis/circos_plotting.Rmd

workflows/annotation_analysis/readme.txt

workflows/braker2/braker2_prot.sh

workflows/braker2/braker2_prot_rna.sh