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3-Purge_contig.s2.sh
Dominik Brilhaus authored
3-Purge_contig.s2.sh 303 B
# Step2
cd ZJ_purge && purge_haplotigs cov -i ZJ.bam.gencov -l 3 -h 120 -m 27 -o ZJ_coverage_stats.csv
cd ../AJ_purge && purge_haplotigs cov -i AJ.bam.gencov -l 2 -h 95 -m 2 -o AJ_coverage_stats.csv
cd ../L618_purge && purge_haplotigs cov -i L618.bam.gencov -l 3 -h 100 -m 25 -o L618_coverage_stats.csv