runs/RNA_OntologyEnrichment/Rna40Enrichments1vs13_dep.txt

+PS	4	0.000351
+redox	4	0.000037

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs13_enr.txt

+DNA.synthesis/chromatin structure.histone.core.H2A	4	0.004825
+DNA.synthesis/chromatin structure.histone.core.H2B	4	0.000355
+DNA	19	0.000003
+DNA.synthesis/chromatin structure.histone.core	11	0.000000
+DNA.synthesis/chromatin structure	19	0.000000
+DNA.synthesis/chromatin structure.histone	19	0.000000

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs1_dep.txt

+nucleotide metabolism.deoxynucleotide metabolism	6	0.043798
+protein.synthesis.ribosomal protein.unknown	6	0.036019
+nucleotide metabolism.deoxynucleotide metabolism.pseudouridine synthase	4	0.025110
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.WD-repeat proteins	5	0.008014
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.methylotransferases	6	0.008014
+protein.synthesis.ribosome biogenesis.export from nucleus	6	0.005159
+transport.sugars	8	0.005159
+protein.aa activation.pseudouridylate synthase	7	0.003204
+transport	83	0.001398
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.misc	6	0.000837
+protein.synthesis.ribosome biogenesis.BRIX	5	0.000837
+RNA.processing.RNA helicase	15	0.000301
+RNA.processing	51	0.000026
+RNA.RNA binding	25	0.000017
+RNA	148	0.000001
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.snoRNPs	9	0.000000
+protein.synthesis	85	0.000000
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications	31	0.000000
+protein.synthesis.ribosome biogenesis	52	0.000000

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs1_enr.txt

+amino acid metabolism.degradation	8	0.031859
+major CHO metabolism.synthesis	7	0.014798
+lipid metabolism.lipid degradation.beta-oxidation	4	0.009515
+redox	14	0.009515
+protein.folding.chaperones and co-chaperones.HSP60s	4	0.007765
+protein	131	0.007457
+protein.degradation.ubiquitin.E3.HECT	4	0.006230
+redox.thioredoxin	8	0.006181
+major CHO metabolism.synthesis.starch	6	0.003088
+protein.folding.chaperones and co-chaperones.HSP70s	5	0.000150
+stress.abiotic	24	0.000000
+stress	28	0.000000
+protein.co-chaperones	15	0.000000
+protein.folding.chaperones and co-chaperones.co-chaperones	13	0.000000
+stress.abiotic.heat	21	0.000000
+protein.folding	44	-0.000000
+protein.folding.chaperones and co-chaperones	30	-0.000000

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs2_dep.txt

+Co-factor and vitamine metabolism	32	0.045141
+nucleotide metabolism.deoxynucleotide metabolism.pseudouridine synthase	5	0.045141
+cell.division	31	0.045141
+protein.synthesis.ribosome biogenesis.export from nucleus	7	0.042479
+fermentation.ADH	4	0.038105
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.misc	6	0.037151
+RNA.transcription	20	0.029407
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.DExD-box helicases	9	0.020771
+protein.synthesis.ribosome biogenesis.BRIX	5	0.020073
+fermentation	8	0.017820
+amino acid metabolism.synthesis.serine-glycine-cysteine group.serine	6	0.016834
+amino acid metabolism.synthesis.glutamate family.proline	6	0.016834
+major CHO metabolism.degradation	20	0.014539
+misc.O-methyl transferases	7	0.013221
+TCA / organic transformation.other organic acid transformations	9	0.013177
+amino acid metabolism.synthesis.aspartate family.asparagine	4	0.011407
+gluconeogenesis / glyoxylate cycle	8	0.010000
+RNA.processing.RNA helicase	20	0.008848
+major CHO metabolism.degradation.starch	15	0.008223
+cell wall.precursor synthesis	11	0.006441
+transport	160	0.005071
+protein.targeting.nucleus	13	0.005071
+C1-metabolism	17	0.003876
+amino acid metabolism.synthesis.central amino acid metabolism.aspartate	5	0.003043
+amino acid metabolism.synthesis.central amino acid metabolism.aspartate.aspartate aminotransferase	5	0.003043
+amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase	5	0.003043
+transport.metabolite transporters at the envelope membrane	15	0.002538
+nucleotide metabolism.synthesis.pyrimidine	7	0.002033
+protein.aa activation.pseudouridylate synthase	11	0.000369
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.snoRNPs	9	0.000121
+nucleotide metabolism.salvage	15	0.000116
+nucleotide metabolism	70	0.000109
+nucleotide metabolism.deoxynucleotide metabolism	13	0.000097
+protein.targeting.mitochondria	17	0.000064
+amino acid metabolism.synthesis.aspartate family	23	0.000040
+RNA.RNA binding	42	0.000003
+transport.metabolite transporters at the mitochondrial membrane	27	0.000003
+amino acid metabolism.synthesis.glutamate family.arginine	14	0.000001
+RNA	293	0.000000
+mitochondrial electron transport / ATP synthesis.F1-ATPase	15	0.000000
+TCA / organic transformation.TCA	21	0.000000
+mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	17	0.000000
+RNA.processing	101	0.000000
+protein.aa activation	44	0.000000
+protein.synthesis	139	0.000000
+protein.synthesis.initiation	36	0.000000
+amino acid metabolism.synthesis.glutamate family	20	0.000000
+amino acid metabolism	105	0.000000
+amino acid metabolism.synthesis	83	0.000000
+protein.synthesis.ribosome biogenesis	60	0.000000
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications	36	0.000000
+TCA / organic transformation	34	0.000000
+mitochondrial electron transport / ATP synthesis	63	0.000000

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs2_enr.txt

+PS	38	0.046524
+amino acid metabolism.degradation.branched chain group.shared	4	0.039957
+nucleotide metabolism.degradation	7	0.039957
+redox.thioredoxin.PDIL	4	0.024798
+protein.degradation.ubiquitin.E3.HECT	5	0.024798
+protein.degradation.ubiquitin.E2	8	0.019770
+protein.degradation	90	0.004704
+protein	290	0.004670
+amino acid metabolism.degradation	17	0.004670
+protein.degradation.ubiquitin	50	0.001244
+redox.thioredoxin	16	0.000110
+redox	31	0.000110
+protein.folding.chaperones and co-chaperones.HSP70s	7	0.000048
+stress	41	0.000001
+stress.abiotic	36	0.000000
+protein.folding.chaperones and co-chaperones.small HSPs	8	0.000000
+protein.co-chaperones	20	0.000000
+protein.folding.chaperones and co-chaperones.co-chaperones	16	0.000000
+stress.abiotic.heat	27	0.000000
+protein.folding	61	0.000000
+protein.folding.chaperones and co-chaperones	40	-0.000000

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs3_dep.txt

+DNA.unspecified	15	0.047886
+hormone metabolism.ethylene.induced-regulated-responsive-activated	4	0.047886
+nucleotide metabolism.salvage.phosphoribosyltransferases	4	0.047886
+nucleotide metabolism.synthesis	25	0.047886
+biodegradation of xenobiotics	10	0.047886
+protein.aa activation	21	0.047886
+hormone metabolism.brassinosteroid.synthesis-degradation.sterols	5	0.047886
+S-assimilation	10	0.044371
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.misc	5	0.032664
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.WD-repeat proteins	5	0.032664
+amino acid metabolism.synthesis.glutamate family.arginine	7	0.031877
+mitochondrial electron transport / ATP synthesis	31	0.024411
+TCA / organic transformation.other organic acid transformations	7	0.021429
+cell	145	0.021429
+C1-metabolism	12	0.020105
+nucleotide metabolism.deoxynucleotide metabolism	8	0.016851
+cell.organisation	47	0.012795
+transport.metabolite transporters at the envelope membrane	11	0.009726
+amino acid metabolism.synthesis.glutamate family	10	0.009726
+cell wall.cell wall proteins	5	0.009726
+PS.lightreaction.hydrogenase.FeFe-hydrogenase	4	0.009726
+PS.lightreaction.hydrogenase	4	0.009726
+nucleotide metabolism	46	0.008763
+major CHO metabolism	27	0.006276
+protein.synthesis.ribosome biogenesis.export from nucleus	7	0.005939
+amino acid metabolism.synthesis.aspartate family.methionine	9	0.004381
+protein.synthesis.ribosome biogenesis.BRIX	5	0.004081
+cell.division	27	0.003566
+nucleotide metabolism.synthesis.pyrimidine	6	0.002584
+RNA.processing.RNA helicase	17	0.002310
+fermentation	8	0.001750
+cell wall.precursor synthesis	10	0.001521
+gluconeogenesis / glyoxylate cycle	8	0.000851
+cell wall	17	0.000766
+major CHO metabolism.degradation.starch	14	0.000660
+mitochondrial electron transport / ATP synthesis.cytochrome c oxidase	11	0.000487
+RNA.RNA binding	29	0.000427
+major CHO metabolism.degradation	20	0.000119
+RNA	204	0.000018
+RNA.processing	70	0.000018
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.snoRNPs	9	0.000006
+amino acid metabolism.synthesis	47	0.000004
+amino acid metabolism.synthesis.aspartate family	21	0.000002
+amino acid metabolism	65	0.000001
+protein.synthesis	100	0.000000
+TCA / organic transformation.TCA	18	0.000000
+protein.synthesis.initiation	28	0.000000
+mitochondrial electron transport / ATP synthesis.F1-ATPase	14	0.000000
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications	29	0.000000
+TCA / organic transformation	28	0.000000
+protein.synthesis.ribosome biogenesis	52	-0.000000

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs3_enr.txt

+major CHO metabolism	17	0.046448
+protein.degradation.ubiquitin.E2	7	0.035272
+PS.photorespiration	6	0.034662
+PS.carbon concentrating mechanism	11	0.030112
+misc.rhodanese	7	0.029876
+lipid metabolism.FA desaturation	5	0.029876
+cell.cycle.peptidylprolyl isomerase	10	0.029201
+lipid metabolism.FA desaturation.desaturase	4	0.029144
+redox.glutaredoxins	4	0.029144
+PS.calvin cycle	8	0.029144
+PS.carbon concentrating mechanism.algal	7	0.029144
+Co-factor and vitamine metabolism.folate and vitamine K.vitamine K	4	0.018968
+protein.degradation.ubiquitin.E3.HECT	5	0.018549
+misc.oxidases - copper, flavone etc	12	0.013236
+Co-factor and vitamine metabolism.folate and vitamine K	5	0.006794
+major CHO metabolism.synthesis	13	0.003380
+protein.folding.immunophilins (IMM)	14	0.003380
+redox.thioredoxin	14	0.001179
+PS.calvin cycle.rubisco interacting	6	0.000586
+major CHO metabolism.synthesis.starch	10	0.000379
+PS	46	0.000264
+protein.folding.chaperones and co-chaperones.small HSPs	6	0.000264
+protein.folding.immunophilins (IMM).FKBPs	10	0.000188
+major CHO metabolism.synthesis.starch.starch synthase	7	0.000113
+protein.folding.chaperones and co-chaperones.HSP70s	7	0.000041
+redox	32	0.000029
+stress.abiotic	32	0.000028
+stress	38	0.000015
+protein.folding.chaperones and co-chaperones.co-chaperones	15	0.000000
+stress.abiotic.heat	25	0.000000
+protein.co-chaperones	22	-0.000000
+protein.folding	62	-0.000000
+protein.folding.chaperones and co-chaperones	36	-0.000000

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs4_dep.txt

+nucleotide metabolism	37	0.041657
+protein	359	0.036769
+development.unspecified	35	0.036234
+TCA / organic transformation.other organic acid transformations	6	0.036234
+minor CHO metabolism	64	0.036151
+transport.metabolite transporters at the envelope membrane	9	0.031537
+signalling.G-proteins	20	0.026807
+amino acid metabolism.synthesis.aspartate family.lysine	5	0.026807
+misc.O-methyl transferases	5	0.026807
+amino acid metabolism.synthesis.aspartate family.methionine	7	0.026807
+nucleotide metabolism.deoxynucleotide metabolism	7	0.026807
+protein.synthesis.ribosome biogenesis.BRIX	4	0.021898
+protein.degradation.ubiquitin.proteasom	15	0.021511
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.misc	5	0.019190
+cell.motility.eukaryotes.basal bodies	11	0.016172
+amino acid metabolism.synthesis.glutamate family.proline	5	0.010043
+transport	100	0.008614
+C1-metabolism	12	0.006411
+cell wall.cell wall proteins	5	0.004739
+transport.metabolite transporters at the mitochondrial membrane	15	0.004739
+cell wall	14	0.004739
+cell	134	0.004043
+RNA.processing.RNA helicase	15	0.004043
+protein.targeting.nucleus	10	0.003649
+amino acid metabolism.synthesis.glutamate family	10	0.003649
+minor CHO metabolism.others	36	0.003649
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.DExD-box helicases	8	0.003649
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.WD-repeat proteins	6	0.002942
+gluconeogenesis / glyoxylate cycle	7	0.002846
+protein.synthesis.ribosome biogenesis.export from nucleus	7	0.002846
+cell wall.precursor synthesis	9	0.002846
+protein.targeting	43	0.002846
+nucleotide metabolism.synthesis.pyrimidine	6	0.001419
+cell.division	26	0.001226
+protein.aa activation	25	0.000599
+TCA / organic transformation.TCA	13	0.000335
+RNA.RNA binding	27	0.000279
+TCA / organic transformation	20	0.000059
+amino acid metabolism	55	0.000025
+amino acid metabolism.synthesis	42	0.000010
+RNA.processing	65	0.000006
+RNA	186	0.000004
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.snoRNPs	9	0.000003
+mitochondrial electron transport / ATP synthesis.F1-ATPase	12	0.000002
+amino acid metabolism.synthesis.aspartate family	20	0.000001
+protein.synthesis	108	0.000000
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications	32	0.000000
+protein.synthesis.ribosome biogenesis	53	-0.000000
+protein.synthesis.initiation	32	-0.000000

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs4_enr.txt

+lipid metabolism.lipid degradation.lipases	7	0.048538
+lipid metabolism.FA desaturation	4	0.038125
+PS.photorespiration	5	0.032938
+redox.thioredoxin	9	0.018525
+major CHO metabolism.synthesis	9	0.016614
+protein.degradation.autophagy	4	0.011530
+amino acid metabolism.degradation	12	0.011530
+protein.folding.chaperones and co-chaperones	11	0.009849
+DNA.repair	15	0.008576
+cell.cycle.peptidylprolyl isomerase	9	0.008532
+amino acid metabolism.synthesis.central amino acid metabolism.alanine	4	0.008532
+misc.rhodanese	7	0.005130
+protein.folding.immunophilins (IMM)	11	0.004770
+nucleotide metabolism.degradation	7	0.004620
+protein.folding.immunophilins (IMM).FKBPs	7	0.003675
+PS	32	0.003225
+amino acid metabolism.synthesis.central amino acid metabolism.alanine.alanine-glyoxylate aminotransferase	4	0.003225
+PS.carbon concentrating mechanism	11	0.003225
+major CHO metabolism.synthesis.starch.starch synthase	5	0.003225
+major CHO metabolism.synthesis.starch	8	0.001544
+amino acid metabolism.degradation.branched chain group.shared	5	0.001257
+protein.folding.chaperones and co-chaperones.co-chaperones	8	0.000706
+amino acid metabolism.degradation.branched chain group	8	0.000577
+PS.carbon concentrating mechanism.algal	9	0.000269
+protein.co-chaperones	13	0.000224
+protein.folding	30	0.000006

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs5_dep.txt

+cell wall.precursor synthesis	6	0.042703
+nucleotide metabolism.deoxynucleotide metabolism	6	0.032532
+cell.division	18	0.032532
+RNA.processing.RNA helicase	11	0.031742
+protein.synthesis.ribosome biogenesis.export from nucleus	5	0.025522
+gluconeogenesis / glyoxylate cycle	5	0.025522
+nucleotide metabolism	33	0.025522
+protein.targeting.mitochondria	8	0.025522
+PS.carbon concentrating mechanism	12	0.024116
+cell.organisation.cytoskeleton.mikrotubuli	6	0.024022
+cell.organisation.cytoskeleton	8	0.013679
+amino acid metabolism.synthesis	29	0.005037
+cell.motility.eukaryotes.flagellar associated proteins	24	0.001936
+amino acid metabolism.synthesis.aspartate family.methionine	8	0.001560
+nucleotide metabolism.phosphotransfer and pyrophosphatases	10	0.001560
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications	16	0.001084
+transport.p- and v-ATPases.H+-transporting two-sector ATPase	8	0.001054
+cell.motility.eukaryotes.intraflagellar transport.IFT particle protein.complex A	5	0.000548
+nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase	4	0.000509
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.snoRNPs	7	0.000101
+transport.p- and v-ATPases	15	0.000089
+protein.synthesis.ribosome biogenesis	27	0.000060
+protein.synthesis.ribosomal protein.prokaryotic.non-organellar	8	0.000044
+cell.motility.eukaryotes.radial spoke.stalk	8	0.000044
+cell.organisation	45	0.000021
+protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit	9	0.000007
+cell.motility.eukaryotes.axonemal dyneins	18	0.000007
+protein.synthesis.ribosomal protein.prokaryotic.non-organellar.50S subunit	8	0.000006
+cell.motility.eukaryotes.basal bodies	15	0.000006
+amino acid metabolism.synthesis.aspartate family	17	0.000005
+cell.motility.eukaryotes.axonemal dyneins.outer arm	11	0.000001
+cell.motility.eukaryotes.radial spoke	11	0.000001
+protein.synthesis.ribosomal protein	47	0.000000
+protein.synthesis.initiation	24	0.000000
+cell.motility.eukaryotes.intraflagellar transport.IFT particle protein.complex B	10	0.000000
+protein.synthesis	109	0.000000
+cell	178	-0.000000
+protein.synthesis.ribosomal protein.prokaryotic	40	-0.000000
+protein.synthesis.ribosomal protein.prokaryotic.chloroplast	28	-0.000000
+protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit	19	-0.000000
+cell.motility.eukaryotes.intraflagellar transport	18	-0.000000
+cell.motility	98	-0.000000
+cell.motility.eukaryotes	98	-0.000000
+cell.motility.eukaryotes.intraflagellar transport.IFT particle protein	15	-0.000000

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs5_enr.txt

+amino acid metabolism	22	0.043162
+secondary metabolism.N misc	4	0.034287
+protein.co-chaperones	8	0.034287
+misc	37	0.031636
+major CHO metabolism.synthesis.starch	6	0.025326
+PS.carbon concentrating mechanism	9	0.024291
+nucleotide metabolism.degradation	6	0.024291
+DNA.repair	15	0.005514
+amino acid metabolism.degradation.branched chain group.shared	5	0.000801
+amino acid metabolism.degradation	14	0.000801
+PS.carbon concentrating mechanism.algal	8	0.000801
+amino acid metabolism.degradation.branched chain group	8	0.000650

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs6_dep.txt

+biodegradation of xenobiotics	7	0.031336
+cell.organisation.cytoskeleton.mikrotubuli	5	0.023171
+TCA / organic transformation.TCA	7	0.022303
+PS.carbon concentrating mechanism	10	0.017339
+nucleotide metabolism.deoxynucleotide metabolism	6	0.007552
+amino acid metabolism.synthesis.aspartate family.methionine	6	0.007552
+gluconeogenesis / glyoxylate cycle	5	0.006356
+cell wall.cell wall proteins	4	0.004989
+cell.division	17	0.004198
+cell.motility.eukaryotes.central pair	7	0.000559
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.snoRNPs	6	0.000199
+cell.motility.eukaryotes.flagellar associated proteins	22	0.000157
+nucleotide metabolism.phosphotransfer and pyrophosphatases	10	0.000110
+cell.motility.eukaryotes.radial spoke.stalk	7	0.000059
+cell.motility.eukaryotes.basal bodies	12	0.000030
+protein.synthesis.ribosomal protein.prokaryotic.non-organellar	8	0.000003
+cell.motility.eukaryotes.intraflagellar transport.IFT particle protein.complex A	6	0.000002
+cell.motility.eukaryotes.intraflagellar transport.IFT motor protein	6	0.000002
+cell.organisation	40	0.000001
+protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit	9	0.000000
+protein.synthesis.ribosomal protein.prokaryotic.non-organellar.50S subunit	8	0.000000
+cell.motility.eukaryotes.axonemal dyneins.inner arm.monomeric species	11	0.000000
+cell.motility.eukaryotes.radial spoke	10	0.000000
+protein.synthesis	65	0.000000
+protein.synthesis.ribosomal protein	40	0.000000
+cell.motility.eukaryotes.intraflagellar transport.IFT particle protein.complex B	11	0.000000
+protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit	16	0.000000
+cell.motility.eukaryotes.axonemal dyneins.inner arm	18	0.000000
+protein.synthesis.ribosomal protein.prokaryotic	36	0.000000
+cell	181	0.000000
+protein.synthesis.ribosomal protein.prokaryotic.chloroplast	25	0.000000
+cell.motility.eukaryotes	114	0.000000
+cell.motility	114	0.000000
+cell.motility.eukaryotes.intraflagellar transport	23	0.000000
+cell.motility.eukaryotes.axonemal dyneins.outer arm	13	-0.000000
+cell.motility.eukaryotes.intraflagellar transport.IFT particle protein	17	-0.000000
+cell.motility.eukaryotes.axonemal dyneins	31	-0.000000

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs6_enr.txt

+secondary metabolism.flavonoids	6	0.043749
+misc.alcohol dehydrogenases	6	0.037091
+misc.rhodanese	7	0.037091
+nucleotide metabolism.degradation	8	0.005679
+amino acid metabolism.degradation.branched chain group.shared	5	0.005599
+amino acid metabolism.degradation.branched chain group	8	0.003524
+misc	59	0.000090

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs7_dep.txt

+protein.synthesis.ribosome biogenesis	15	0.044974
+transport.calcium	6	0.043701
+cell.division	15	0.018691
+nucleotide metabolism.deoxynucleotide metabolism	6	0.006803
+gluconeogenesis / glyoxylate cycle	5	0.005672
+nucleotide metabolism	28	0.004882
+TCA / organic transformation.TCA	8	0.004882
+cell.motility.eukaryotes.basal bodies	9	0.003512
+TCA / organic transformation	12	0.002298
+cell.motility.eukaryotes.flagellar membrane proteins	5	0.001306
+protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit	6	0.001188
+protein.synthesis.ribosomal protein	29	0.000790
+protein.synthesis	51	0.000652
+nucleotide metabolism.phosphotransfer and pyrophosphatases	9	0.000652
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.snoRNPs	6	0.000207
+protein.synthesis.ribosomal protein.prokaryotic.non-organellar	7	0.000056
+cell.motility.eukaryotes.central pair	8	0.000056
+protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit	10	0.000050
+protein.synthesis.ribosomal protein.prokaryotic.non-organellar.50S subunit	7	0.000011
+cell.motility.eukaryotes.intraflagellar transport.IFT motor protein	6	0.000002
+cell.motility.eukaryotes.intraflagellar transport.IFT particle protein.complex A	6	0.000002
+cell.organisation	39	0.000001
+protein.synthesis.ribosomal protein.prokaryotic.chloroplast	16	0.000000
+cell.motility.eukaryotes.axonemal dyneins.inner arm.monomeric species	12	0.000000
+cell.motility.eukaryotes.radial spoke.stalk	10	0.000000
+cell.motility.eukaryotes.intraflagellar transport.IFT particle protein.complex B	10	0.000000
+cell.motility.eukaryotes.radial spoke	13	0.000000
+protein.synthesis.ribosomal protein.prokaryotic	25	0.000000
+cell.motility.eukaryotes.flagellar associated proteins	31	0.000000
+cell	193	0.000000
+cell.motility.eukaryotes.intraflagellar transport	22	0.000000
+cell.motility.eukaryotes.axonemal dyneins.inner arm	21	0.000000
+cell.motility	129	0.000000
+cell.motility.eukaryotes	129	0.000000
+cell.motility.eukaryotes.axonemal dyneins	35	0.000000
+cell.motility.eukaryotes.axonemal dyneins.outer arm	14	-0.000000
+cell.motility.eukaryotes.intraflagellar transport.IFT particle protein	16	-0.000000

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs7_enr.txt

+misc.UDP glucosyl and glucoronyl transferases	13	0.043774
+secondary metabolism.flavonoids.dihydroflavonols	5	0.040647
+misc.gluco-, galacto- and mannosidases	9	0.039263
+misc.alcohol dehydrogenases	7	0.037587
+amino acid metabolism.degradation.branched chain group	8	0.015498
+misc.cytochrome P450	8	0.015498
+amino acid metabolism.degradation.branched chain group.shared	5	0.015471
+secondary metabolism.flavonoids	8	0.013091
+PS.carbon concentrating mechanism.algal	9	0.012365
+nucleotide metabolism.degradation	9	0.012365
+hormone metabolism	29	0.006992
+misc.misc2	16	0.004774
+misc.rhodanese	10	0.004774
+protein.degradation.autophagy	6	0.004774
+hormone metabolism.auxin	10	0.004774
+hormone metabolism.auxin.signal transduction	10	0.000219
+	1337	0.000090
+misc	100	0.000000

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs8_dep.txt

+nucleotide metabolism	29	0.031064
+nucleotide metabolism.deoxynucleotide metabolism	6	0.018008
+TCA / organic transformation.TCA	8	0.015472
+gluconeogenesis / glyoxylate cycle	5	0.013724
+TCA / organic transformation	12	0.010639
+cell.motility.eukaryotes.central pair.C1a	4	0.009915
+PS.carbon concentrating mechanism	12	0.006927
+cell.motility.eukaryotes.flagellar membrane proteins	5	0.003233
+cell wall.cell wall proteins.proline rich proteins	4	0.001029
+cell.motility.eukaryotes.basal bodies	11	0.000768
+cell wall.cell wall proteins	5	0.000739
+protein.synthesis.ribosome biogenesis.pre-rRNA processing and modifications.snoRNPs	6	0.000574
+nucleotide metabolism.phosphotransfer and pyrophosphatases	10	0.000479
+protein.synthesis.ribosomal protein.prokaryotic.non-organellar	8	0.000011
+cell.motility.eukaryotes.intraflagellar transport.IFT motor protein	6	0.000004
+cell.motility.eukaryotes.intraflagellar transport.IFT particle protein.complex A	6	0.000004
+cell.organisation	43	0.000002
+cell.motility.eukaryotes.axonemal dyneins.inner arm.monomeric species	11	0.000002
+protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit	9	0.000002
+protein.synthesis.ribosomal protein.prokaryotic.non-organellar.50S subunit	8	0.000002
+cell.motility.eukaryotes.central pair	10	0.000002
+protein.synthesis	69	0.000001
+protein.synthesis.ribosomal protein	42	0.000000
+cell.motility.eukaryotes.radial spoke	14	0.000000
+cell.motility.eukaryotes.intraflagellar transport.IFT particle protein.complex B	11	0.000000
+protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit	17	0.000000
+cell.motility.eukaryotes.radial spoke.stalk	11	0.000000
+cell.motility.eukaryotes.intraflagellar transport	23	0.000000
+cell	211	0.000000
+cell.motility.eukaryotes.axonemal dyneins.inner arm	20	0.000000
+protein.synthesis.ribosomal protein.prokaryotic	37	0.000000
+protein.synthesis.ribosomal protein.prokaryotic.chloroplast	26	0.000000
+cell.motility.eukaryotes.flagellar associated proteins	37	0.000000
+cell.motility.eukaryotes	142	-0.000000
+cell.motility	142	-0.000000
+cell.motility.eukaryotes.axonemal dyneins.outer arm	14	-0.000000
+cell.motility.eukaryotes.intraflagellar transport.IFT particle protein	17	-0.000000
+cell.motility.eukaryotes.axonemal dyneins	34	-0.000000

runs/RNA_OntologyEnrichment/Rna40Enrichments1vs8_enr.txt

+amino acid metabolism.degradation.branched chain group	8	0.021163
+protein.degradation.ubiquitin.E3	28	0.020898
+protein.degradation.ubiquitin.E3.RING	21	0.019417
+amino acid metabolism.degradation.branched chain group.shared	5	0.018651
+lipid metabolism.glycerol metabolism	5	0.018651
+hormone metabolism.auxin	9	0.017701
+hormone metabolism	29	0.017559
+protein.degradation.ubiquitin	56	0.017301
+misc.alcohol dehydrogenases	8	0.016468
+hormone metabolism.auxin.signal transduction	8	0.011343
+misc.rhodanese	10	0.008027
+misc.UDP glucosyl and glucoronyl transferases	16	0.007493
+misc.misc2	17	0.004070
+	1410	0.002982
+nucleotide metabolism.degradation	11	0.001620
+protein.degradation	123	0.000069
+protein.degradation.autophagy	8	0.000046
+misc	107	0.000000