Cwl Descriptions

Add cwl descriptions and metadata

workflows/EvalTurboID/TurboIDSampleArc.cwl

@@ -36,20 +36,11 @@ outputs:
       glob: $(runtime.outdir)/$(inputs.runID)
 
 
-arc:has measurement type:
-  - class: arc:measurement type
-    arc:term accession: "http://purl.obolibrary.org/obo/OMIT_0023015"
-    arc:term source REF: "OMIT"
-    arc:annotation value: "Proteomics"
-    
-
 arc:has technology type:
   - class: arc:technology type
-    arc:term accession: "http://purl.obolibrary.org/obo/OMIT_0013943"
-    arc:term source REF: "OMIT"
-    arc:annotation value: "Mass Spectrometry"
+    arc:annotation value: "Docker Container"
 
-arc:technology platform: SCIEX
+arc:technology platform: ".NET"
 
 arc:performer:
   - class: arc:Person
@@ -64,7 +55,7 @@ arc:performer:
 
 arc:has process sequence:
   - class: arc:process sequence
-    arc:name: "MassSpectrometry"
+    arc:name: "TurboID"
     arc:has input: 
       - class: arc:sample
         arc:name: "PR135_01"
@@ -81,29 +72,53 @@ arc:has process sequence:
           - class: arc:protocol parameter
             arc:has parameter name: 
             - class: arc:parameter name
-              arc:term accession: "http://purl.obolibrary.org/obo/PATO_0000146"
-              arc:term source REF: "PATO"
-              arc:annotation value: "temperature"
-        arc:has unit:
-          - class: arc:unit
-            arc:term accession: "http://purl.obolibrary.org/obo/UO_0000027"
-            arc:term source REF: "UO"
-            arc:annotation value: "degree Celsius"
-        arc:value: 35
+              arc:term accession: "http://edamontology.org/operation_0004"
+              arc:term source REF: "EMBRACE"
+              arc:annotation value: "Operation"
+        arc:value: 
+          - class: arc:ontology annotation
+            arc:term accession: "http://edamontology.org/operation_0362"
+            arc:term source REF: "EMBRACE"
+            arc:annotation value: "Genome annotation"
       - class: arc:process parameter value
         arc:has parameter:
           - class: arc:protocol parameter
             arc:has parameter name: 
             - class: arc:parameter name
-              arc:term accession: "http://purl.obolibrary.org/obo/OBI_0000615"
-              arc:term source REF: "OBI"
-              arc:annotation value: "protein expression profiling assay"
+              arc:term accession: "http://edamontology.org/operation_0004"
+              arc:term source REF: "EMBRACE"
+              arc:annotation value: "Operation"
         arc:value: 
           - class: arc:ontology annotation
-            arc:term accession: "http://purl.obolibrary.org/obo/BAO_0010027"
-            arc:term source REF: "BAO"
-            arc:annotation value: "shotgun MS protein profiling assay"
-
+            arc:term accession: "http://edamontology.org/operation_3435"
+            arc:term source REF: "EMBRACE"
+            arc:annotation value: "Standardisation and normalisation"
+      - class: arc:process parameter value
+        arc:has parameter:
+          - class: arc:protocol parameter
+            arc:has parameter name: 
+            - class: arc:parameter name
+              arc:term accession: "http://edamontology.org/operation_0004"
+              arc:term source REF: "EMBRACE"
+              arc:annotation value: "Operation"
+        arc:value: 
+          - class: arc:ontology annotation
+            arc:term accession: "http://edamontology.org/operation_3557"
+            arc:term source REF: "EMBRACE"
+            arc:annotation value: "Imputation"
+      - class: arc:process parameter value
+        arc:has parameter:
+          - class: arc:protocol parameter
+            arc:has parameter name: 
+            - class: arc:parameter name
+              arc:term accession: "http://purl.obolibrary.org/obo/OBCS_0000001"
+              arc:term source REF: "OBCS"
+              arc:annotation value: "statistical data analysis"
+        arc:value: 
+          - class: arc:ontology annotation
+            arc:term accession: "http://purl.obolibrary.org/obo/OBCS_0000141"
+            arc:term source REF: "OBCS"
+            arc:annotation value: "significance analysis of microarrays"
 
 $namespaces:
   arc: https://github.com/nfdi4plants/ARC_ontology