Cwl Descriptions

Add cwl descriptions and metadata

workflows/EvalTurboID/TurboIDSampleArc.cwl

+cwlVersion: v1.2
+class: CommandLineTool
+hints:
+  DockerRequirement:
+    dockerPull: mcr.microsoft.com/dotnet/sdk:7.0
+requirements:
+  # - class: InlineJavascriptRequirement
+  - class: InitialWorkDirRequirement
+    listing:
+      - entryname: arc
+        entry: $(inputs.arcDirectory)
+  - class: EnvVarRequirement
+    envDef:
+      - envName: DOTNET_NOLOGO
+        envValue: "true"
+  - class: NetworkAccess
+    networkAccess: true
+baseCommand: [dotnet, fsi, "./arc/workflows/EvalTurboID/EvalTurboID.fsx"]
+inputs:
+  arcDirectory:
+    type: Directory
+  input:
+    type: File
+    inputBinding:
+      position: 1
+      prefix: -i
+  runID:
+    type: string
+    inputBinding:
+      position: 2
+      prefix: -id
+  fdr:
+    type: float?
+    inputBinding:
+      position: 3
+      prefix: -fdr
+outputs:
+  output:
+    type: Directory
+    outputBinding:
+      glob: $(runtime.outdir)/$(inputs.runID)
+
+
+arc:has technology type:
+  - class: arc:technology type
+    arc:annotation value: "Docker Container"
+
+arc:technology platform: ".NET"
+
+arc:performer:
+  - class: arc:Person
+    arc:first name: "David"
+    arc:last name: "Zimmer"
+    arc:email: "d_zimmer@rptu.de"
+    arc:affiliation: "RPTU Kaiserslautern/Landau"
+    arc:has role: 
+      - class: arc:role
+        arc:term accession: "https://credit.niso.org/contributor-roles/formal-analysis/"
+        arc:annotation value: "Formal analysis"
+
+arc:has process sequence:
+  - class: arc:process sequence
+    arc:name: "TurboID"
+    arc:has parameter value: 
+      - class: arc:process parameter value
+        arc:has parameter:
+          - class: arc:protocol parameter
+            arc:has parameter name: 
+            - class: arc:parameter name
+              arc:term accession: "http://edamontology.org/operation_0004"
+              arc:term source REF: "EMBRACE"
+              arc:annotation value: "Operation"
+        arc:value: 
+          - class: arc:ontology annotation
+            arc:term accession: "http://edamontology.org/operation_0362"
+            arc:term source REF: "EMBRACE"
+            arc:annotation value: "Genome annotation"
+      - class: arc:process parameter value
+        arc:has parameter:
+          - class: arc:protocol parameter
+            arc:has parameter name: 
+            - class: arc:parameter name
+              arc:term accession: "http://edamontology.org/operation_0004"
+              arc:term source REF: "EMBRACE"
+              arc:annotation value: "Operation"
+        arc:value: 
+          - class: arc:ontology annotation
+            arc:term accession: "http://edamontology.org/operation_3435"
+            arc:term source REF: "EMBRACE"
+            arc:annotation value: "Standardisation and normalisation"
+      - class: arc:process parameter value
+        arc:has parameter:
+          - class: arc:protocol parameter
+            arc:has parameter name: 
+            - class: arc:parameter name
+              arc:term accession: "http://edamontology.org/operation_0004"
+              arc:term source REF: "EMBRACE"
+              arc:annotation value: "Operation"
+        arc:value: 
+          - class: arc:ontology annotation
+            arc:term accession: "http://edamontology.org/operation_3557"
+            arc:term source REF: "EMBRACE"
+            arc:annotation value: "Imputation"
+      - class: arc:process parameter value
+        arc:has parameter:
+          - class: arc:protocol parameter
+            arc:has parameter name: 
+            - class: arc:parameter name
+              arc:term accession: "http://purl.obolibrary.org/obo/OBCS_0000001"
+              arc:term source REF: "OBCS"
+              arc:annotation value: "statistical data analysis"
+        arc:value: 
+          - class: arc:ontology annotation
+            arc:term accession: "http://purl.obolibrary.org/obo/OBCS_0000141"
+            arc:term source REF: "OBCS"
+            arc:annotation value: "significance analysis of microarrays"
+
+$namespaces:
+  arc: https://github.com/nfdi4plants/ARC_ontology
+
+$schemas:
+  - https://raw.githubusercontent.com/nfdi4plants/ARC_ontology/main/ARC_v2.0.owl
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