Merge branch 'update_workflows' into 'main'
restructure workflows for reproducibility See merge request brilator/samplearc_rnaseq!2
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- README.md 9 additions, 1 deletionREADME.md
- assays/Talinum_RNASeq_minimal/README.md 0 additions, 0 deletionsassays/Talinum_RNASeq_minimal/README.md
- assays/Talinum_RNASeq_minimal/isa.assay.xlsx 0 additions, 0 deletionsassays/Talinum_RNASeq_minimal/isa.assay.xlsx
- assays/Talinum_RNASeq_minimal/protocols/README.md 0 additions, 0 deletionsassays/Talinum_RNASeq_minimal/protocols/README.md
- assays/Talinum_RNASeq_minimal/protocols/RNAex_libraries.md 0 additions, 0 deletionsassays/Talinum_RNASeq_minimal/protocols/RNAex_libraries.md
- studies/TalinumFacultativeCAM/README.md 0 additions, 0 deletionsstudies/TalinumFacultativeCAM/README.md
- studies/TalinumFacultativeCAM/protocols/plant_material.md 0 additions, 0 deletionsstudies/TalinumFacultativeCAM/protocols/plant_material.md
- studies/TalinumGenomeDraft/isa.study.xlsx 0 additions, 0 deletionsstudies/TalinumGenomeDraft/isa.study.xlsx
- workflows/.Rhistory 0 additions, 1 deletionworkflows/.Rhistory
- workflows/01_KallistoQuant.sh 10 additions, 9 deletionsworkflows/01_KallistoQuant.sh
- workflows/03_KallistoCollect.R 18 additions, 8 deletionsworkflows/03_KallistoCollect.R
- workflows/04_Sleuth.R 5 additions, 2 deletionsworkflows/04_Sleuth.R
- workflows/05_plot_shinyPrep.R 5 additions, 2 deletionsworkflows/05_plot_shinyPrep.R
- workflows/_arc_local_wd 1 addition, 0 deletionsworkflows/_arc_local_wd
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