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Commit 6efab19f authored by Dominik Brilhaus's avatar Dominik Brilhaus
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try building deseq2 docker

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1 merge request!4fix docker
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        FROM quay.io/biocontainers/bioconductor-deseq2:1.42.0--r43hf17093f_2 FROM rstudio/r-base:4.3-jammy
        # Since our base image is an R docker base we will use BiocManager install
        RUN apt-get update && \ RUN apt-get update && \
        R -e "install.packages(c('BiocManager'), repos='https://cloud.r-project.org/');BiocManager::install('tximport')" && \ R -e "install.packages(c('BiocManager'), repos='https://cloud.r-project.org/'); BiocManager::install('DESeq2'); BiocManager::install('tximport'); BiocManager::install('rhdf5'); \\" && \
        apt-get clean -y apt-get clean -y
        \ No newline at end of file
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