Commits · 070b503555ace6e35a176f5fdac4a82368f5f76c · Dominik Brilhaus / Facultative CAM in Talinum

Nov 07, 2024
- allow factor list · 070b5035
  Dominik Brilhaus authored 6 months ago
  
  070b5035
Nov 05, 2024
- deseq cwl works (without docker) · 8a4c41b4
  Dominik Brilhaus authored 6 months ago
  
  8a4c41b4
- towards wrap deseq in cwl · 95b5b5bd
  Dominik Brilhaus authored 6 months ago
  
  95b5b5bd
Nov 04, 2024
- [needs f# fix] add isaSampleToRawDataSeq · 28e57415
  Dominik Brilhaus authored 6 months ago
  
  28e57415
Aug 05, 2024
- add log last run · 0bf45cab
  Dominik Brilhaus authored 9 months ago
  
  0bf45cab
- re-run kallisto with v 0.50 · 449cda92
  Dominik Brilhaus authored 9 months ago
  
  449cda92
- allow to adapt which part of the file name(s) shall be kept · 20f7b1f7
  Dominik Brilhaus authored 9 months ago
  
  20f7b1f7
Aug 02, 2024
- trying to fix use of R with CWL · cb06bbb8
  Dominik Brilhaus authored 9 months ago
  
  cb06bbb8
- kallisto workflow results all samples · 2dbb8cc5
  Dominik Brilhaus authored 9 months ago
  
  2dbb8cc5
- collect results in single folder · 312c4907
  Dominik Brilhaus authored 9 months ago
  
  312c4907
- somewhat generic kallisto with multiple samples worked · 8bc5ebe5
  Dominik Brilhaus authored 9 months ago
  
  8bc5ebe5
- design workflow · e92c3586
  Dominik Brilhaus authored 9 months ago
  
  e92c3586
- first steps re-design cwl based analysis · 9214eb5e
  Dominik Brilhaus authored 9 months ago
  
  9214eb5e
- restructure kallisto pipeline · 68c17471
  Dominik Brilhaus authored 9 months ago
  
  68c17471
- remove old scripts, cwl approaches, run results · 163979ff
  Dominik Brilhaus authored 9 months ago
  
  163979ff
Jan 23, 2024
- re-add large files · 038a57da
  Dominik Brilhaus authored 1 year ago
  
  038a57da
Jan 15, 2024
- arcitect save · b17d8d73
  Dominik Brilhaus authored 1 year ago
  
  b17d8d73
Mar 27, 2023
- update file references in isa.dataset · aa67224f
  Dominik Brilhaus authored 2 years ago
  
  aa67224f
Mar 24, 2023
- update path · 775b844e
  Dominik Brilhaus authored 2 years ago
  
  775b844e
- docker-free kallisto sleuth · f31bbdea
  Dominik Brilhaus authored 2 years ago
  
  f31bbdea
- docker-free kallisto collect · fe52b95a
  Dominik Brilhaus authored 2 years ago
  
  fe52b95a
- docker-free kallisto index · 9fda69ff
  Dominik Brilhaus authored 2 years ago
  
  9fda69ff
- docker-free kallisto quant · 384e4ef6
  Dominik Brilhaus authored 2 years ago
  
  384e4ef6
- docker-less shiny prep · 1f05dd17
  Dominik Brilhaus authored 2 years ago
  
  1f05dd17
- dockerless merge isa · 44c39387
  Dominik Brilhaus authored 2 years ago
  
  44c39387
- remove READMEs · 4be391f0
  Dominik Brilhaus authored 2 years ago
  
  4be391f0
- unify to run.yml · bc590452
  Dominik Brilhaus authored 2 years ago
  
  bc590452
Mar 15, 2023
- Update isa.dataset.xlsx · 65d0a720
  Martin Kuhl authored 2 years ago
  
  65d0a720
- Delete isa.run.xlsx · a000af83
  Martin Kuhl authored 2 years ago
  
  a000af83
- Update isa.dataset.xlsx · 293a5c74
  Martin Kuhl authored 2 years ago
  
  293a5c74
- Delete isa.run.xlsx · 11c73888
  Martin Kuhl authored 2 years ago
  
  11c73888
Aug 26, 2022
- wd in shiny prep · bc1296dd
  Dominik Brilhaus authored 2 years ago
  
  bc1296dd
- rm cwl-dev · 6f731323
  Dominik Brilhaus authored 2 years ago
  
  6f731323
- adapt WDs.. · 4c88a8d4
  Dominik Brilhaus authored 2 years ago
  
  4c88a8d4
- change CWL version properly... · 627baa89
  Dominik Brilhaus authored 2 years ago
  
  627baa89
- test without dev flag · 1579c893
  Dominik Brilhaus authored 2 years ago
  
  1579c893
Aug 13, 2022
- Refactor · 7b009a02
  Adrian Zimmer authored 2 years ago
  
  7b009a02
- Dockerize shiny_prep · f4b0b741
  Adrian Zimmer authored 2 years ago
  
  f4b0b741
- Dockerize merge_isa_metadata · 14e17ca6
  Adrian Zimmer authored 2 years ago
  
  14e17ca6
- Dockerize kallisto_collect · 66ed13b5
  Adrian Zimmer authored 2 years ago
  
  66ed13b5