Commits · b938dde09b889dab501439a6a9f8080f8d7422f6 · Dominik Brilhaus / Facultative CAM in Talinum

Mar 19, 2025
- arc.cwl · b938dde0
  Dominik Brilhaus authored 2 weeks ago
  
  b938dde0
- fix separating sampleseq output · d707aa14
  Dominik Brilhaus authored 2 weeks ago
  
  d707aa14
- improve logic to gather output directories from kallisto scatter step · 00fa74c2
  Dominik Brilhaus authored 2 weeks ago
  
  00fa74c2
- add job parameters sleuth · 3439c440
  Dominik Brilhaus authored 2 weeks ago
  
  3439c440
Mar 18, 2025
- towards combining everything in one arc.cwl · ff506329
  Dominik Brilhaus authored 2 weeks ago
  
  ff506329
- Merge branch 'main' of https://git.nfdi4plants.org/brilator/Facultative-CAM-in-Talinum · 0bf412a4
  Dominik Brilhaus authored 2 weeks ago
  
  0bf412a4
- fix id of renamed assay · 0917c49f
  Dominik Brilhaus authored 2 weeks ago
  
  0917c49f
- Merge branch 'docker-dependencies' into 'main' · 37851f35
  Dominik Brilhaus authored 2 weeks ago
  
  Docker dependencies See merge request !18
  37851f35
- move deseq readme to cwl docs section · 1a41155e
  Dominik Brilhaus authored 2 weeks ago
  
  1a41155e
- rm dockerfile sleuth · bd465bfd
  Dominik Brilhaus authored 2 weeks ago
  
  bd465bfd
- try fix docker for shiny · ec55b2eb
  Dominik Brilhaus authored 2 weeks ago
  
  ec55b2eb
- Merge branch 'isa-rename' into 'main' · c6bd3390
  Dominik Brilhaus authored 2 weeks ago
  
  Isa rename See merge request !17
  c6bd3390
- rename study · 668b9b5c
  Dominik Brilhaus authored 2 weeks ago
  
  668b9b5c
- rename assay rnaseq · 12952600
  Dominik Brilhaus authored 2 weeks ago
  
  12952600
- fix mermaid · 5db51ec2
  Dominik Brilhaus authored 2 weeks ago
  
  5db51ec2
- Merge branch 'cwl' into 'main' · 7943aba7
  Dominik Brilhaus authored 2 weeks ago
  
  Cwl See merge request !16
  7943aba7
- polish readme · 1579a8e9
  Dominik Brilhaus authored 2 weeks ago
  
  1579a8e9
- add cwl docs · d154be9e
  Dominik Brilhaus authored 2 weeks ago
  
  d154be9e
- fix workflow plots · 6fd57ad2
  Dominik Brilhaus authored 3 weeks ago
  
  6fd57ad2
- Merge branch 'cwl' into 'main' · b6cbec3a
  Dominik Brilhaus authored 3 weeks ago
  
  towards auto-validating cwl See merge request !15
  b6cbec3a
- towards auto-validating cwl · 9c4807f3
  Dominik Brilhaus authored 3 weeks ago
  
  9c4807f3
- Merge branch 'cwl' into 'main' · bb650946
  Dominik Brilhaus authored 3 weeks ago
  
  Cwl See merge request !14
  bb650946
- switch kallisto input to array of records · 943e5e52
  Dominik Brilhaus authored 3 weeks ago
  
  943e5e52
- replace sampleRecord logic in kallisto · c67b71f2
  Dominik Brilhaus authored 3 weeks ago
  
  c67b71f2
- add and run fastqc workflow · 43934494
  Dominik Brilhaus authored 3 weeks ago
  
  43934494
- remove deprecated · 1d5ac604
  Dominik Brilhaus authored 3 weeks ago
  
  1d5ac604
Mar 17, 2025
- Merge branch 'cwl-shiny' into 'main' · 57794e2f
  Dominik Brilhaus authored 3 weeks ago
  
  Cwl shiny See merge request !13
  57794e2f
- cleaning · 988ac506
  Dominik Brilhaus authored 3 weeks ago
  
  988ac506
- convert shiny to single-step cwl · f099f06d
  Dominik Brilhaus authored 3 weeks ago
  
  f099f06d
- start to cwl-wrap shiny app · 0f5de5cb
  Dominik Brilhaus authored 3 weeks ago
  
  0f5de5cb
Mar 14, 2025
- Merge branch 'restructure-cwl' into 'main' · 8c03b76a
  Dominik Brilhaus authored 3 weeks ago
  
  Restructure cwl See merge request !12
  8c03b76a
- rename workflow to sleuth · c572b83d
  Dominik Brilhaus authored 3 weeks ago
  
  c572b83d
- rm deprecated isa merge · 62287362
  Dominik Brilhaus authored 3 weeks ago
  
  62287362
- rm deprecated sleuth approach · 77cbdcf9
  Dominik Brilhaus authored 3 weeks ago
  
  77cbdcf9
- fixed kallisto_collect · 12915113
  Dominik Brilhaus authored 3 weeks ago
  
  12915113
- try fix kallisto collect · 9ad6fdd6
  Dominik Brilhaus authored 3 weeks ago
  
  9ad6fdd6
- Merge branch 'restructure-cwl' into 'main' · c525eba7
  Dominik Brilhaus authored 3 weeks ago
  
  Restructure cwl See merge request !11
  c525eba7
- add short explanation · b336ca0f
  Dominik Brilhaus authored 3 weeks ago
  
  b336ca0f
- deseq: use csv as input, return svg figures · 9146ed60
  Dominik Brilhaus authored 3 weeks ago
  
  9146ed60
- adapt isaSampleToRawDataSeq to start from Source (not Sample) · 26181b2f
  Dominik Brilhaus authored 3 weeks ago
  
  26181b2f

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